Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04242 and BPUM_2548
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:46
# Commandline: needle
# -asequence dna-align/BSNT_04242___ytaG.1.24716.seq
# -bsequence dna-align/BPUM_2548___coaE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04242___ytaG-BPUM_2548___coaE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04242___ytaG-BPUM_2548___coaE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04242___ytaG
# 2: BPUM_2548___coaE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 653
# Identity: 404/653 (61.9%)
# Similarity: 404/653 (61.9%)
# Gaps: 106/653 (16.2%)
# Score: 1102.5
#
#
#=======================================
BSNT_04242___ 1 TTGAC-CTTAGTCATTGGTTTAACGGGAGGAATAGCTAGCGGCAAAAGCA 49
||||| ||| ||||||||.|||||.||.||.||.||||||||.|||||||
BPUM_2548___c 1 TTGACGCTT-GTCATTGGATTAACAGGCGGGATTGCTAGCGGAAAAAGCA 49
BSNT_04242___ 50 CGGTAGCCAATATGCTGATTGA-AAAAGGAATAACA----------GTTA 88
|.||..| ||.|| ||| ||||| |.|| |||.
BPUM_2548___c 50 CAGTCTC------GCAGA-TGATAAAAG----AGCAGGGCATCCGGGTTG 88
BSNT_04242___ 89 TAGATGCAGATATCATTGCAAAACAAGCGGTAGAAAAAGGGATGCCGGCC 138
|.||.||||||.|.|||||||||.|||||||.|..|||||.|..||.|||
BPUM_2548___c 89 TGGACGCAGATGTGATTGCAAAAGAAGCGGTCGGCAAAGGAACACCCGCC 138
BSNT_04242___ 139 TACCGGCAAATCATTGACGAA--TTCGGTGAAGACATACTGCTCTCAAAT 186
...|..||.|||.|| |.|| ||.|||||.|...|.||.||..|||||
BPUM_2548___c 139 CTTCATCATATCGTT--CAAACCTTTGGTGAGGGTGTCCTCCTGCCAAAT 186
BSNT_04242___ 187 GGCGATATAGATCGAAAAAAGCTTGGAGCGCTGGTATTTACAAATGAACA 236
||.||..|.||.||..|..|.||.|||||..|..|.|||.|.||||||.|
BPUM_2548___c 187 GGAGAGCTGGACCGGCAGCAACTCGGAGCCATTATTTTTTCTAATGAAGA 236
BSNT_04242___ 237 AAAACGTCTCGC-TTTAAATGCAATTGTTCATCCCGCAGTCAGGCAGGAA 285
.|||.| ...|| .||||||||.||.||||||||.|.|||..|..|||||
BPUM_2548___c 237 GAAAAG-AAAGCAGTTAAATGCGATCGTTCATCCAGAAGTGCGAAAGGAA 285
BSNT_04242___ 286 ATGCTCAATCGCCGTGATGAAGCCGTTGCAAAT---CGGGAGGCATTTGT 332
|||||||..|..||||||||||.|.|| ||| ||.||..||||.||
BPUM_2548___c 286 ATGCTCAGACAGCGTGATGAAGGCATT---AATAGCCGAGAAACATTCGT 332
BSNT_04242___ 333 TGTATTGGATATCCCGCTATTGTTCGAAAGCAAATTG--GAATCATTGGT 380
|||.||||||||||||||.||.||.||.||..|..|| ||.|| |.||
BPUM_2548___c 333 TGTCTTGGATATCCCGCTTTTATTTGAGAGTCAGCTGGAGAGTC--TCGT 380
BSNT_04242___ 381 TGATAAAATTATTGTGGTCAGTGTGACAA---AAGATCTTCAACTGGAAC 427
.||....||||||||||| ||.| |||| .|||..|.||.||...||
BPUM_2548___c 381 CGACCGTATTATTGTGGT--GTAT-ACAACACCAGAATTACAGCTATCAC 427
BSNT_04242___ 428 GTCTGATGAAGCGCAATCAGCTGACGGAAGAAGAAGCAGTCAGCCGTATC 477
|.||.|||||.||.||..|.||.|..||.||.|||||..|.|..||.||.
BPUM_2548___c 428 GACTCATGAATCGAAACGACCTTAGTGAGGAGGAAGCGCTGAATCGGATT 477
BSNT_04242___ 478 CGCTCTCAAATGCC-CTTAGAGGAAAAA---ACAGCAAAAGCAGATCAAG 523
|.||||||...||| ||| ||||||||| | || ||||||||.||.|
BPUM_2548___c 478 CACTCTCAGCAGCCTCTT-GAGGAAAAATGTA-AG--AAAGCAGACCACG 523
BSNT_04242___ 524 TCATTGATAACAGCGGCAC--------GCTTGAA---GAGACCAAAAGGC 562
|.||.||.||.| ||| ||||..| ||.|.|||
BPUM_2548___c 524 TGATAGAAAATA----CACAAGACCTTGCTTTTATTCGAAAGCAA----- 564
BSNT_04242___ 563 AGCTTG-------------ATGAA----ATCATGAACAGCTGGGCATAA- 594
||| ||||| |.||| |||| ||||
BPUM_2548___c 565 ---TTGCAGAACATATTAAATGAATGGGAACAT--ACAG------ATAAG 603
BSNT_04242___ 594 --- 594
BPUM_2548___c 604 TAA 606
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