Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04231 and BPUM_2542
See
Amino acid alignment /
Visit
BSNT_04231 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:45
# Commandline: needle
# -asequence dna-align/BSNT_04231___dnaI.1.24716.seq
# -bsequence dna-align/BPUM_2542___dnaI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04231___dnaI-BPUM_2542___dnaI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04231___dnaI-BPUM_2542___dnaI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04231___dnaI
# 2: BPUM_2542___dnaI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1013
# Identity: 667/1013 (65.8%)
# Similarity: 667/1013 (65.8%)
# Gaps: 160/1013 (15.8%)
# Score: 2121.5
#
#
#=======================================
BSNT_04231___ 1 ATGGAACCAATCGGCCGTTC------TCTGC----AGGGCGTAACCGGCA 40
|||.||||.|||||.||||| ||.|| ||||||
BPUM_2542___d 1 ATGAAACCGATCGGTCGTTCATTTGATCAGCTAAAAGGGCG--------- 41
BSNT_04231___ 41 GGCCG--GATTTCCAAAAACGTCTTGAACAAATGAAGGAAAAAGTC--AT 86
|| ||||| ||.|| ||| ||.|.|.|| ||
BPUM_2542___d 42 ---CGTAGATTT---------TCGTG------TGA--GATACAATCAGAT 71
BSNT_04231___ 87 GAAA---------------GATCAAGATGTTCAAGCATTTTTGAAGGAAA 121
.||| |||.|||||||..||||.|||||..||||..
BPUM_2542___d 72 TAAAGAGAGTGTGTTATCTGATGAAGATGTAAAAGCTTTTTTACAGGAGC 121
BSNT_04231___ 122 ACGAAGAAGTGATTGACCAAAAAATGATCGAAAAG-AGCTTAAATAAGCT 170
||.||||||..||..||.||.|.|||||| ||..| |||||.||...|||
BPUM_2542___d 122 ACCAAGAAGACATACACGAAGACATGATC-AATCGCAGCTTGAACCGGCT 170
BSNT_04231___ 171 TTATGAATATATCGAACAAAGC-AAGAATTGCTCCTATTG-TTCGGAAGA 218
||.|||||||.| |.|..|.|| |||...||.||.||||| || |||
BPUM_2542___d 171 TTTTGAATATGT-GCAGCAGGCGAAGGGCTGTTCATATTGCTT----AGA 215
BSNT_04231___ 219 TGAA---AACTGCAA--CAATTTGTTGGAGGGCTACCATCCGAAGCTTGT 263
|||| |||..||| |.| |.||.||.||.||.||.||.||||||||
BPUM_2542___d 216 TGAAGAGAACGTCAATGCGA--TATTAGACGGTTATCACCCAAAGCTTGT 263
BSNT_04231___ 264 TGTCAATGGGAGGTC----TATTGATATCGAGTATTACGAATGTCCAGTC 309
..|.|| ||||| |||||||||.||.||||.|...|||||||||
BPUM_2542___d 264 GATTAA----AGGTCAGAGTATTGATATTGAATATTCCCCTTGTCCAGTC 309
BSNT_04231___ 310 AA---ACGGAAGCTCGACCAG-CAGAAGAAA---CAAAAGTCTCTTATGA 352
|| ||| |.|||| .|| |||||.||| |||.|| ||.||||
BPUM_2542___d 310 AAGCTACG---GTTCGA-TAGACAGAAAAAACAGCAAGAG---CTCATGA 352
BSNT_04231___ 353 AAAGCATGTATATCCAGCAGGATCTTCTCGGAGCGACGTTCCAGCAAGTT 402
||||||||||.||.|.|||..||.||||...|||.||||| .|.|
BPUM_2542___d 353 AAAGCATGTACATTCCGCAAAATGTTCTTCAAGCAACGTT------TGCT 396
BSNT_04231___ 403 GATATCA-----GT--GACCCGAG-CAGGCTCGCGATGT--TTCAGCATG 442
|||.|.| || || || ||| ||.|| ||||..|.|
BPUM_2542___d 397 GATTTGAACGTTGTAGGA----AGACAG------GAAGTCATTCAAAAAG 436
BSNT_04231___ 443 TTACAG---ACTTCCTGAAAAGCTATAATGAGACGGGAAAAGGGAAAGGA 489
| || |.||||||.||||||||.|.||||||||.|||||.|||||.
BPUM_2542___d 437 T---AGGGCAATTCCTGCAAAGCTATGACGAGACGGGCAAAGGAAAAGGC 483
BSNT_04231___ 490 TTATATTTATACGGGAAATTCGGGGTAGGAAAAACGTTTATGCTCGCTGC 539
|||||||||.||||.||.||.||.|||||||||||||.|||.||.||.||
BPUM_2542___d 484 TTATATTTACACGGAAAGTTTGGAGTAGGAAAAACGTATATTCTGGCAGC 533
BSNT_04231___ 540 GATTGCCAATGAGCTGGCGGAAAAAGAGTATTC----CTCCATGATTGTC 585
.|||||..|..||.|.|||||.||.||.|||.| |||| ||||.
BPUM_2542___d 534 CATTGCGCAGCAGTTAGCGGAGAAGGAATATCCATCTCTCC----TTGTG 579
BSNT_04231___ 586 TATGTGCCTGAATTTGTGAGAGAGCTTAAGAATTCGCT-GCAAGACCAGA 634
||.||||||||.|||||.||||||||.||.||||||.| || .||.||.|
BPUM_2542___d 580 TACGTGCCTGAGTTTGTAAGAGAGCTAAAAAATTCGTTAGC-CGATCATA 628
BSNT_04231___ 635 CATTGGAAGAGAAGCTCAATATGGTAAAGACCACACCCGTATTGATGCTT 684
||||.|||...||.||.||.|||||.||..||||.||..||||.||||||
BPUM_2542___d 629 CATTAGAATCAAAACTGAACATGGTCAAATCCACTCCTATATTAATGCTT 678
BSNT_04231___ 685 GATGACATCGGAGCAGAATCAATGACAAGCTGGGTAAGGGATGAAGTCAT 734
|||||.||.||.||.||.||.||||||||||||||..|.||||||.|..|
BPUM_2542___d 679 GATGATATTGGGGCCGAGTCGATGACAAGCTGGGTTCGAGATGAACTACT 728
BSNT_04231___ 735 CGGAACGGTGCTTCAACACAGAATGTCCCAGCAGCTGCCTACTTTCTTTT 784
.||||||.|..|.|||.|..|.|||.|..||||||||||.||||||||.|
BPUM_2542___d 729 TGGAACGATTTTACAATATCGTATGGCAGAGCAGCTGCCGACTTTCTTCT 778
BSNT_04231___ 785 CTTCTAATTTCTCACCTGACGAGCTGAAGCATCATTTTACGTATTCGCAG 834
|.||||||||||||||....||.|||||||||||.|||||||||||.|||
BPUM_2542___d 779 CCTCTAATTTCTCACCAAGTGAACTGAAGCATCACTTTACGTATTCACAG 828
BSNT_04231___ 835 AGGGGAGAAAAAGAAGAAGTAAAAGCTGCAAGATTAATGGAGCGGATATT 884
.|.||.|||||||||||.||.||||||||..|.||||||||.|||||..|
BPUM_2542___d 829 CGCGGGGAAAAAGAAGAGGTCAAAGCTGCTCGTTTAATGGAACGGATTCT 878
BSNT_04231___ 885 ATATTTGGC-----------TGCTCCGATCCGCCTTGACGGAGAAAACCG 923
.|||||.|| ||||| ||.|||||||||||
BPUM_2542___d 879 CTATTTAGCAGAGGCAGTCTTGCTC-----------GAAGGAGAAAACCG 917
BSNT_04231___ 924 CCGCCATCCATAA 936
|||.|||..||||
BPUM_2542___d 918 CCGTCATTTATAA 930
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.