Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04224 and BPUM_2539
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:45
# Commandline: needle
# -asequence dna-align/BSNT_04224___thrS.1.24716.seq
# -bsequence dna-align/BPUM_2539___thrS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04224___thrS-BPUM_2539___thrS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04224___thrS-BPUM_2539___thrS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04224___thrS
# 2: BPUM_2539___thrS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1964
# Identity: 1535/1964 (78.2%)
# Similarity: 1535/1964 (78.2%)
# Gaps: 55/1964 ( 2.8%)
# Score: 5980.5
#
#
#=======================================
BSNT_04224___ 1 ATGTCAGATATGGTAAAAA------TCACATTTCCTGATGGAGCAGTCAA 44
|||||||| |.||| |.||||||||.||||||||.|||||
BPUM_2539___t 1 ATGTCAGA------ACAAATTCAACTTACATTTCCAGATGGAGCGGTCAA 44
BSNT_04224___ 45 GGAGTTTGCGAAAGGAACAACAACAGAAGATATCGCGGCATCCATCAGTC 94
||||||||..|||..|.|.|||||||||||.|||||||||||.||.||.|
BPUM_2539___t 45 GGAGTTTGACAAAACAGCTACAACAGAAGACATCGCGGCATCAATTAGCC 94
BSNT_04224___ 95 CGGGATTAAAGAAAAAATCATTAGCCGGAAAACTGAACGGAAAAGAAATC 144
|.||..|||||||||||.|..|.|||||.|||.|||||||.||||||||.
BPUM_2539___t 95 CAGGCCTAAAGAAAAAAGCGCTTGCCGGTAAATTGAACGGCAAAGAAATA 144
BSNT_04224___ 145 GATTTGAGAACGCCGATCAAT-GAAGACGGTACAGTGGAAATCATTACAG 193
|||.||.|.||||||.| |.| |||...||.|||.|.||.|||||.||||
BPUM_2539___t 145 GATCTGCGTACGCCGCT-ACTAGAAAGTGGAACAATTGAGATCATCACAG 193
BSNT_04224___ 194 ----AAGGCTCAGAAGAAGGTCTTCAAATTATGCGCCACAGTACGGCTCA 239
||| .||.||||..||..|.||||||||||||||.||.|||||
BPUM_2539___t 194 ATAAAAG----TGATGAAGCACTCGACATTATGCGCCACAGCACAGCTCA 239
BSNT_04224___ 240 CTTGCTGGCTCAAGCGATTAAACGC----ATCTACAAG-----GATGTTA 280
.|||||.||.||.||.||.|||||| ||..|.||| .|.|||.
BPUM_2539___t 240 TTTGCTAGCACAGGCAATCAAACGCCTGTATGGAAAAGAACATCACGTTC 289
BSNT_04224___ 281 AATTCGGCGTCGGTCCGGTTATCGAAAACGGTTTTTACTACGATGTAGAA 330
|.||.|||||.|||||.||.||.|||||.||.||.|||||||||||.||.
BPUM_2539___t 290 AGTTTGGCGTAGGTCCTGTGATTGAAAATGGCTTCTACTACGATGTGGAC 339
BSNT_04224___ 331 ATGGACGAAGCGATTACACCGGAGGATCTGCCGAAAATCGAGAAAGAAAT 380
||.||.|..||.||.|||||.||.|||.|.||.||.||.||.||||||||
BPUM_2539___t 340 ATCGATGTTGCCATCACACCAGAAGATTTACCAAAGATTGAAAAAGAAAT 389
BSNT_04224___ 381 GAAAAAAATCGTTAA-TGCGAACCTGCCGATCGTTCGAAAAGAAG--TCA 427
||||||||||.|||| .|| ||..|.||.||||..||||..|||| |||
BPUM_2539___t 390 GAAAAAAATCATTAACAGC-AATTTACCAATCGAGCGAATTGAAGTTTCA 438
BSNT_04224___ 428 GCCGTGAAGAAGCGAAAGCCCGTTTTGCGGAAATCGGCGACGACCTGAAG 477
.|.|||||.||||||...||.||||..|..||.||.||..|..|.|||
BPUM_2539___t 439 --AGAGAAGACGCGAAAAAACGCTTTGAAGCGATTGGTGATCAATTAAAG 486
BSNT_04224___ 478 CTTGAACTATTGGATGCGATTCCTGAAGGAGAAACCGTTTCGATCTATGA 527
|||||.||.||.||.||||||||.|||||.|||.|.|||.||||.|||||
BPUM_2539___t 487 CTTGAGCTGTTAGAAGCGATTCCAGAAGGTGAAGCTGTTACGATTTATGA 536
BSNT_04224___ 528 GCAAGGCGAATTCTTTGACCTGTGCCGCGGTGTCCATGTTCCTTCAACCG 577
|||.||.||.|||||||||||.||||||||..|.||..|.||.|||||.|
BPUM_2539___t 537 GCAGGGTGAGTTCTTTGACCTCTGCCGCGGGATTCACTTGCCATCAACAG 586
BSNT_04224___ 578 GAAAAATCAAAGAGTTTAAGCTGTTAAGCCTTGCAGGCGCATACTGGCGC 627
|.|||||||||||||||||||||.||||||||||.||.|||||||||.|.
BPUM_2539___t 587 GGAAAATCAAAGAGTTTAAGCTGCTAAGCCTTGCTGGTGCATACTGGAGA 636
BSNT_04224___ 628 GGCGACAGCAAAAACCAAATGCTTCAGCGCGTATATGGTACAGCTTTCTT 677
||.||||||||.||.||||||||||||||..|.||.||||||||||||||
BPUM_2539___t 637 GGTGACAGCAACAATCAAATGCTTCAGCGTATTTACGGTACAGCTTTCTT 686
BSNT_04224___ 678 CAAAAAAGCTGATCTTGAAGAGCATCTT-CGTATGCTAGAAGAAGCGAAA 726
||..||||.||||||..|.||||| ||| ||..||||.||||||||||||
BPUM_2539___t 687 CAGCAAAGATGATCTAAATGAGCA-CTTACGCCTGCTTGAAGAAGCGAAA 735
BSNT_04224___ 727 GAACGCGACCACAGAAAGCTCGGCAAAGAATTAAAGCTGTTTGCGAACTC 776
||||||||.|||.|.||.||.||.|||||..||||.||||||||||||||
BPUM_2539___t 736 GAACGCGATCACCGTAAACTAGGAAAAGAGCTAAAACTGTTTGCGAACTC 785
BSNT_04224___ 777 TCAAAAAGTCGGACAAGGCCTGCCGCTTTGGCTGCCAAAAGGCGCGACAA 826
||||||.||.||.|||||.||.||.||||||||||||||||||||.||.|
BPUM_2539___t 786 TCAAAAGGTAGGTCAAGGTCTACCACTTTGGCTGCCAAAAGGCGCAACGA 835
BSNT_04224___ 827 TCCGCCGCGTCATCGAGCGCTACATTGTCGATAAAGAAATCAGCCTCGGC 876
||||||||||.||.|||||.||||||||||||||||||.|..||||.||.
BPUM_2539___t 836 TCCGCCGCGTGATTGAGCGTTACATTGTCGATAAAGAAGTACGCCTTGGT 885
BSNT_04224___ 877 TATGAGCACGTATACACACCTGTGCTAGGCAGCAAA----GAGCTGTATG 922
||||||||.||.||.|||||.||.|| .||||| ||..|||||.
BPUM_2539___t 886 TATGAGCATGTGTATACACCAGTTCT----TGCAAATGTTGAATTGTATA 931
BSNT_04224___ 923 AAACATCAGGACACTGGGACCATTATCAGGAAGGCATGTTCCCTCCGATG 972
||||||||||.|||||||..||||||||.||||..|||||||||..||||
BPUM_2539___t 932 AAACATCAGGGCACTGGGCGCATTATCAAGAAGATATGTTCCCTGTGATG 981
BSNT_04224___ 973 GAAATGGACAATGAAACACTTGTATTGCGTCCGATGAACTGTCCGCACCA 1022
|||||||||||.|||...|||||..|.|||||.|||||||||||||||||
BPUM_2539___t 982 GAAATGGACAACGAAGATCTTGTTCTCCGTCCAATGAACTGTCCGCACCA 1031
BSNT_04224___ 1023 TATGATGATTTACAAACAAGA----CATTCACAGTTACCGCGAGCTTCCG 1068
||||||||||||||||.|.|| ||| ||.||.|||||..|.||.
BPUM_2539___t 1032 TATGATGATTTACAAAAACGAGCCGCAT----AGCTATCGCGAATTGCCA 1077
BSNT_04224___ 1069 ATTCGTATTGCGGAGCTTGGAACGATGCACCGCTATGAAATGTCAGGTGC 1118
|||||||||||.||||||||.||.||||||||||||||||||||||||||
BPUM_2539___t 1078 ATTCGTATTGCAGAGCTTGGTACAATGCACCGCTATGAAATGTCAGGTGC 1127
BSNT_04224___ 1119 GCTGTCAGGGCTTCAACGGGTACGCGGAATGACGTTAAATGATGCACACA 1168
..|.||.||.|||||.||.||.|||||.|||||.|||||.|||||.||.|
BPUM_2539___t 1128 TTTATCCGGCCTTCAGCGTGTTCGCGGTATGACATTAAACGATGCCCATA 1177
BSNT_04224___ 1169 TCTTTGTGCGCCCGGATCAAATTAAGGATGAGTTTATCCGTACAGTCCGT 1218
|||||||.||.||.||||||||.||.||.||.||.||.||||||||.||.
BPUM_2539___t 1178 TCTTTGTTCGTCCAGATCAAATCAAAGACGAATTCATTCGTACAGTTCGC 1227
BSNT_04224___ 1219 TTAATCCAGGATGTTTATGAAGACTTCGGTTTAAGTGATTACACATTCCG 1268
.||||..|.||.||.|||.|||||||.||.||.|.|||.|||||||||||
BPUM_2539___t 1228 CTAATTGAAGAAGTGTATCAAGACTTTGGCTTGAATGACTACACATTCCG 1277
BSNT_04224___ 1269 TCTGTCTTACCGCGATCCGGAAGATACAGAGAAATATTTTGATGACGATG 1318
..|.||||||||.|||||.||||||||.|||||.|||||.||.||.||||
BPUM_2539___t 1278 CTTATCTTACCGTGATCCAGAAGATACTGAGAAGTATTTCGACGATGATG 1327
BSNT_04224___ 1319 AAATGTGGAACAAAGCGCAATCCATGCTGAAAGAGGCAATGGACGAAATC 1368
..||||||||.|||||.|||||.|||||.||.||.|||||||||||..|.
BPUM_2539___t 1328 CGATGTGGAATAAAGCACAATCGATGCTAAAGGATGCAATGGACGAGCTT 1377
BSNT_04224___ 1369 GGCCACGACTATTACGAAGCAGAAGGTGAAGCGGCATTCTACGGCCCTAA 1418
||.||.||||||||.|||||||||||.|||||.|||||.||.||.||.||
BPUM_2539___t 1378 GGTCATGACTATTATGAAGCAGAAGGCGAAGCAGCATTTTATGGTCCGAA 1427
BSNT_04224___ 1419 ACTTGATGTCCAAGTGAAAACTGCGATCGGAAAAGAAGAAACACTGTCTA 1468
.|||||.||.||||||||.||.||..|.|||||||||||.||||||||||
BPUM_2539___t 1428 GCTTGACGTGCAAGTGAAGACAGCTCTTGGAAAAGAAGAGACACTGTCTA 1477
BSNT_04224___ 1469 CGGTACAGCTTGATTTCTTATTGCCGGAACGTTTCGACCTGACATACATC 1518
|.||||||||||||||||||.|.||.||.||.|||||.||.|||||.||.
BPUM_2539___t 1478 CTGTACAGCTTGATTTCTTACTTCCAGAGCGCTTCGATCTCACATATATT 1527
BSNT_04224___ 1519 GGTGAGGACGGCAAGCAGCACCGTCCGGTTGTCATTCACAGAGGTGTCGT 1568
||.||.||.||||||||.||.|||||.||.||.|||||.||||||||.||
BPUM_2539___t 1528 GGAGAAGATGGCAAGCACCATCGTCCAGTCGTGATTCATAGAGGTGTTGT 1577
BSNT_04224___ 1569 TTCAACAATGGAACGCTTTGTTGCCTTCTTAATCGAAGAACACAAAGGCG 1618
|||.||||||||.||.|||||||||||||||||.||||||.|||||||.|
BPUM_2539___t 1578 TTCTACAATGGAGCGTTTTGTTGCCTTCTTAATTGAAGAATACAAAGGAG 1627
BSNT_04224___ 1619 CGCTGCCGACATGGCTTGCACCGGTTCAGTTCCAAGTCATTCCGGTTTCT 1668
|.||.||.||.|||||.|||||.||.||.|||||||||||.||.|||||.
BPUM_2539___t 1628 CCCTACCAACTTGGCTGGCACCTGTACAATTCCAAGTCATCCCAGTTTCA 1677
BSNT_04224___ 1669 CCGGCTGTGCATTTAGACTACGCGAAAAAAGTGCAGGAACGCCTGCAGCG 1718
||..||||.|||||||||||.|||||||||||.||.|||||..||||||.
BPUM_2539___t 1678 CCATCTGTCCATTTAGACTATGCGAAAAAAGTACAAGAACGTTTGCAGCT 1727
BSNT_04224___ 1719 TGAAGGCCTGCGTGTTGAAGTCGACAGCCGCGATGAAAAAATCGGCTACA 1768
||||||.||.||||||||..|.||||||||.||||||||||||||.||||
BPUM_2539___t 1728 TGAAGGTCTTCGTGTTGAGCTTGACAGCCGTGATGAAAAAATCGGATACA 1777
BSNT_04224___ 1769 AAATCCGTGAAGCGCAAATGCAAAAAATCCCGTACATGCTGGTGGTCGGT 1818
||||..|.|||||||||||||||||.||||||||||||||.||||||||.
BPUM_2539___t 1778 AAATTAGAGAAGCGCAAATGCAAAAGATCCCGTACATGCTAGTGGTCGGA 1827
BSNT_04224___ 1819 GACCAAGAAGCAGAAAACGGCGCGGTAAACGTGCGTAAATACGGAGAGCA 1868
||.||||||||||||||.|||||.||.||.||..|.||||||||||||||
BPUM_2539___t 1828 GATCAAGAAGCAGAAAATGGCGCAGTCAATGTAAGAAAATACGGAGAGCA 1877
BSNT_04224___ 1869 GAACTCTGAAACGATTTCTCTTGATGAGTTTGTGAAAAAGGCAGTAGCTG 1918
..|.||.|||||.||...||||||.|..|||||||||.|.|||||.||.|
BPUM_2539___t 1878 AGATTCAGAAACAATGGATCTTGAAGCCTTTGTGAAACATGCAGTCGCAG 1927
BSNT_04224___ 1919 AAGCGAAAAAATAA 1932
||||||||||||||
BPUM_2539___t 1928 AAGCGAAAAAATAA 1941
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