Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04223 and BPUM_2537

See Amino acid alignment / Visit BSNT_04223 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:44
# Commandline: needle
#    -asequence dna-align/BSNT_04223___ysaA.1.24716.seq
#    -bsequence dna-align/BPUM_2537___ysaA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04223___ysaA-BPUM_2537___ysaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04223___ysaA-BPUM_2537___ysaA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04223___ysaA
# 2: BPUM_2537___ysaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 855
# Identity:     574/855 (67.1%)
# Similarity:   574/855 (67.1%)
# Gaps:          99/855 (11.6%)
# Score: 1898.0
# 
#
#=======================================

BSNT_04223___      1 ATGAGCCTTTTGGCAGAAAGATTTGAATCTGAAGCAGAGGAGAAGATCAT     50
                                                                     ||
BPUM_2537___y      1 ------------------------------------------------AT      2

BSNT_04223___     51 GAAAGCCGTATTTTTTGATTTAGATGATACACTACTTTGGGACGAAAAAA    100
                     |||||||||||||||.||||||||||||||..|.||||||||.|||||||
BPUM_2537___y      3 GAAAGCCGTATTTTTCGATTTAGATGATACTTTGCTTTGGGATGAAAAAA     52

BSNT_04223___    101 GC-GTCAGAACAACATTTGCA-GAAACTTGCTTACAGGCGGAGAAAAAAT    148
                     || .|||.|.||  .|||.|| |||||.|||....|.|||||.||.||||
BPUM_2537___y     53 GCATTCATACCA--CTTTTCAGGAAACATGCCGCGAAGCGGAAAAGAAAT    100

BSNT_04223___    149 ATGGCCTTGACCCTGAGGAATTCGAAGCAG-CTGTTCGCGAAGCAGCGAG    197
                     ||||.||..|.||.||...|||.||| ||| .||||||.||||.|||.||
BPUM_2537___y    101 ATGGACTGAATCCAGAAACATTTGAA-CAGATTGTTCGTGAAGAAGCAAG    149

BSNT_04223___    198 AGAATTGTACATGTCATATGAGACGTATCCATATACAGTGATGATCGGCA    247
                     |.|..||||....||.|||||.||.|||...|||||.||.||||||||.|
BPUM_2537___y    150 AAAGCTGTATTCTTCCTATGAAACATATGATTATACTGTCATGATCGGAA    199

BSNT_04223___    248 TTAACCCGTTTGAAGGACTGTGGTCCAATTTCTCAGAGCCAATCAGTGAA    297
                     ||||.||.||.|||||.||||||||||||||....||.||.||.||.|||
BPUM_2537___y    200 TTAATCCTTTCGAAGGCCTGTGGTCCAATTTTAGTGAACCGATTAGCGAA    249

BSNT_04223___    298 GGTTTTCAAAAGCTGAACAAGATTGTGCCGGAGTA-CAGAAGAAATGCAT    346
                     ||.||||||||..|||||...||||..||.||||| |..||| ||.||.|
BPUM_2537___y    250 GGCTTTCAAAAATTGAACGCCATTGCACCAGAGTATCGCAAG-AACGCTT    298

BSNT_04223___    347 GGACAAACGGACTGAAAG-CGCTTGGGATCGATGATCCTGCATATGGCGA    395
                     ||||.||.||..|.|||| .|| .||.||.||.|||...||||.|||..|
BPUM_2537___y    299 GGACCAATGGCTTAAAAGAAGC-AGGAATTGACGATGAAGCATTTGGACA    347

BSNT_04223___    396 ATACTTGGGAGAGTTTTTTGCGGCAGAGCGCAGAAAACGCCCGTTTGTAT    445
                     |||.||||..||.||.|||||.||.|||||.||||||||.||.|||||.|
BPUM_2537___y    348 ATATTTGGCTGATTTCTTTGCCGCCGAGCGGAGAAAACGTCCATTTGTCT    397

BSNT_04223___    446 ATGATGAAACATTTGCTGTACTC-GATCAATTA---------AAAGGCAA    485
                     ||||.|||||       ||||.| |.|   |||         |||||.||
BPUM_2537___y    398 ATGAAGAAAC-------GTACCCTGTT---TTAAACCGCCTGAAAGGTAA    437

BSNT_04223___    486 GTATGAATTATTGCTTTTGACAAATGGCGATCCGAGTCTGCAAAAGGAGA    535
                     .||||||.|..|.|||||.|||||.||.|||||.|||||.|||||.||.|
BPUM_2537___y    438 CTATGAACTGCTCCTTTTAACAAACGGAGATCCTAGTCTTCAAAAAGAAA    487

BSNT_04223___    536 AGCTTGCCGGCGTACCTGAGCTTGCTCCTTACTTCAATGAAATCGTCATC    585
                     |.||.|||||.||.|||||||||||.|||||.||.||||||||.||.||.
BPUM_2537___y    488 AACTGGCCGGTGTCCCTGAGCTTGCACCTTATTTTAATGAAATTGTGATT    537

BSNT_04223___    586 TCGGGCGCATT-CGGCAAGGGCAAGCCGGAT----GTTTCAATTTTTGAA    630
                     ||.||.| ||| |||.||.|||||.||.|||    ||    ||.|||||.
BPUM_2537___y    538 TCAGGAG-ATTACGGGAAAGGCAAACCCGATCCAGGT----ATCTTTGAG    582

BSNT_04223___    631 CACTGCCTTAAGCTGATGAATATTGAAAATGACGATGCCATCATGGTCGG    680
                     |||||||||.|||||.|.|||.|...|||.||.||||..||||||||.||
BPUM_2537___y    583 CACTGCCTTCAGCTGTTAAATCTAACAAAAGATGATGTGATCATGGTGGG    632

BSNT_04223___    681 CGATAATTTAAATACTGATATTTTAGGCGCTTCAAGAGCCGGAATCAAAA    730
                     .||.|||..|||.||.||||||.|.||.||.||..|.|..||.||..|||
BPUM_2537___y    633 AGACAATCCAAAAACAGATATTCTTGGGGCATCTCGCGTTGGTATTCAAA    682

BSNT_04223___    731 CCGTTTGGATCAACCGGACGGAT---AAGAAAAACGAAACTGACGTAACG    777
                     |||||||||||||.| |||  ||   ||.||.||.|||||.||.||.|||
BPUM_2537___y    683 CCGTTTGGATCAATC-GAC--ATGGCAAAAAGAATGAAACAGATGTCACG    729

BSNT_04223___    778 CCTGATTACATCATCAGCAGCCTT-CATGATTTGTTTCCTATATTAGAGA    826
                     ||.|||||....|||| .||.||| |||||.||||||..|||.|||   |
BPUM_2537___y    730 CCAGATTATGAAATCA-AAGACTTACATGAATTGTTTGATATTTTA---A    775

BSNT_04223___    827 AATAA    831
                     ||||.
BPUM_2537___y    776 AATAG    780


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04223 and BPUM_2537

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
