Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04217 and BPUM_2534
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:44
# Commandline: needle
# -asequence dna-align/BSNT_04217___lrgA.1.24716.seq
# -bsequence dna-align/BPUM_2534___ysbA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04217___lrgA-BPUM_2534___ysbA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04217___lrgA-BPUM_2534___ysbA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04217___lrgA
# 2: BPUM_2534___ysbA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 495
# Identity: 298/495 (60.2%)
# Similarity: 298/495 (60.2%)
# Gaps: 105/495 (21.2%)
# Score: 841.5
#
#
#=======================================
BSNT_04217___ 1 ATGAGTGCTAAAAAAGTGTACGGGTTTTTAACACAAGCATTTATTTTTGC 50
||||||||.|..|||||.||.||.|||.||.|.|||||||||||.|||||
BPUM_2534___y 1 ATGAGTGCCACTAAAGTATATGGATTTCTATCTCAAGCATTTATCTTTGC 50
BSNT_04217___ 51 CGTCATTATGCTGGTTTCAAATATGATTGC--CGCTATTGTCCCAATACC 98
...|.|.|||.|.|||||.|||.|.|||.| .| |||| |.||.||.||
BPUM_2534___y 51 AACCGTAATGTTCGTTTCTAATCTCATTTCAATG-TATT-TACCCATTCC 98
BSNT_04217___ 99 TATCCCGGCATCGGTTGTAGGGTTGGTCTTATTATTTCTCCTATTATGTT 148
.||.||.|||||.|| |.|||||| ||.||||..|||| ||||
BPUM_2534___y 99 GATGCCTGCATCTGT-----GATTGGTC----TAGTTCTATTATT-TGTT 138
BSNT_04217___ 149 T----------GAAAGTCATTAAACTGGAACAAGTGGAAACGC---TCGG 185
| ||||.||.|.||||||||.||.||||| || |.||
BPUM_2534___y 139 TTGCTGACAACGAAAATCGTCAAACTGGAGCAGGTGGA---GCAATTAGG 185
BSNT_04217___ 186 AACGTCTTTAAC----CTCTCTGATCGGATTTTTATTTGTTCCGTCAGGT 231
.||.||.||.|| ||| ||..|.|||.||||||||||.||.|||
BPUM_2534___y 186 TACATCATTGACAGGGCTC----ATTAGCTTTCTATTTGTTCCCTCTGGT 231
BSNT_04217___ 232 ATATCTGTTATGAATTCGCTTGGTGTGATGC-AGCAATACGGCCTGCAAA 280
||.||.|||||..|.||.||.|||||.|||| ||.|.|| ||..|||||.
BPUM_2534___y 232 ATTTCGGTTATTCAATCACTAGGTGTCATGCAAGAAGTA-GGTGTGCAAG 280
BSNT_04217___ 281 T------TGTTCTTGTCATTCTGCTCGCAACGATTATTCTGCTGGGGGCT 324
| ||||.|..||||| |||||||||||..||||.|..||.
BPUM_2534___y 281 TCGTCGGTGTTATCATCATT------GCAACGATTATGTTGCTTGCAGCG 324
BSNT_04217___ 325 ACGGGATTGTTTTCTCAGCTGATTCTGTCGC--TGAGCGGAAAACGCAAA 372
||.||..|.|||||.|||| ||||...|| |.|.|.|| |||
BPUM_2534___y 325 ACAGGGCTATTTTCACAGC---TTCTCATGCAATTATCAGA------AAA 365
BSNT_04217___ 373 ACCGCAGCGGACATGAAAACAAAAACAGTGCAAAGCCCGCAGAACAATAA 422
|||.||| ||||..|||.|| .|||| |.|||.||| |.
BPUM_2534___y 366 ACCACAG---------AAACGTAAAGAG-ACAAA----GGAGAGCAA-AT 400
BSNT_04217___ 423 CGAACTCGTTCAC--------------------------CATTAA 441
|| ||||.|||.| ||||||
BPUM_2534___y 401 CG-ACTCCTTCTCATTCTAATAAACCAGCTTCAAGTACGCATTAA 444
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