Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04216 and BPUM_2533

See Amino acid alignment / Visit BSNT_04216 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:44
# Commandline: needle
#    -asequence dna-align/BSNT_04216___lrgB.1.24716.seq
#    -bsequence dna-align/BPUM_2533___ysbB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04216___lrgB-BPUM_2533___ysbB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04216___lrgB-BPUM_2533___ysbB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04216___lrgB
# 2: BPUM_2533___ysbB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 702
# Identity:     520/702 (74.1%)
# Similarity:   520/702 (74.1%)
# Gaps:          12/702 ( 1.7%)
# Score: 1868.0
# 
#
#=======================================

BSNT_04216___      1 ATGG---AAAGCACAATGAGTCCTTATTTTGGGATTGTCGTATCACTTGC     47
                     ||||   .|||.||||||||||||||||||||.||.|||||.|||.|.|.
BPUM_2533___y      1 ATGGGTACAAGTACAATGAGTCCTTATTTTGGTATAGTCGTCTCATTAGT     50

BSNT_04216___     48 TGCATTCGGCATCGGCACCTTTTTATTTAAGAAAACGAAAGGCTTCTTCC     97
                     .||.||.||.|||||.||.||.||||||||.|||.|.||||||||||||.
BPUM_2533___y     51 CGCCTTTGGAATCGGTACATTCTTATTTAAAAAATCAAAAGGCTTCTTCT    100

BSNT_04216___     98 TTTTCACTCCTTTGTTTGTTGCCATGGTGCTGGGGATCGCATTTTTAAAA    147
                     |.|||||.||..|||||||.||||||.||.|.||.||...||||||||||
BPUM_2533___y    101 TATTCACACCACTGTTTGTAGCCATGTTGTTAGGTATTTTATTTTTAAAA    150

BSNT_04216___    148 ATCGGCGGTTTTTCCTACGCGGATTATAATAACGGGGGAGAGATCATTAA    197
                     ||.||||||||||||||.||.|||||||||.|.||.||..||||.||.||
BPUM_2533___y    151 ATTGGCGGTTTTTCCTATGCAGATTATAATGAGGGCGGCAAGATTATCAA    200

BSNT_04216___    198 GTTTTTCCTTGAACCGGCAACGATCGCATTTGCAATTCCTTTGTACAAAC    247
                     |||||||.|.||.||.||.||.||.||.||.||.|||||..|.||.||.|
BPUM_2533___y    201 GTTTTTCTTAGAGCCCGCGACCATTGCTTTCGCTATTCCGCTTTATAAGC    250

BSNT_04216___    248 AAAGAG-ATAAGCTTAAAAAATACTGGTGGCAAATCATGGCCTCCATTAT    296
                     |..|.| || .||||||||||||.||||||||.||..|..||.|.|||.|
BPUM_2533___y    251 AGCGTGCAT-TGCTTAAAAAATATTGGTGGCAGATTTTATCCGCTATTTT    299

BSNT_04216___    297 TGCCGGCTCTATCTGCTCTGTCACGATTGTTTATTTGCTCGCTAAAGGCA    346
                     ||..||.||..|.||.||..|.||.|||||.|||.|..|.||.|||||.|
BPUM_2533___y    300 TGTAGGATCACTTTGTTCCATTACAATTGTGTATGTCGTAGCAAAAGGAA    349

BSNT_04216___    347 TTCATCTCGATTCGGCCGTAATGAAAAGCATGCTTCCGCAGGCGGCTACA    396
                     |||||||.|||.|.||.||.||||||||.|||||.||.|||||.||.||.
BPUM_2533___y    350 TTCATCTTGATGCAGCTGTCATGAAAAGTATGCTCCCACAGGCAGCGACG    399

BSNT_04216___    397 ACGGCAATTGCGCTTCCTTTATCAAAAGGCATCGGGGGCAT--CAGCGAC    444
                     ||.||.|||||.|||||..|..||||.|..||.||.||.||  ||  ||.
BPUM_2533___y    400 ACAGCGATTGCTCTTCCGATTGCAAAGGATATTGGCGGAATTGCA--GAT    447

BSNT_04216___    445 ATCACAGCCTTTGCGGTCATCTTTAACGCTGTCATCGTATATGCGCTCGG    494
                     ||||||||||||||||||||.|||||.||.||||||||.||||||||.||
BPUM_2533___y    448 ATCACAGCCTTTGCGGTCATATTTAATGCAGTCATCGTGTATGCGCTAGG    497

BSNT_04216___    495 AGCATTGTTCTTGAAGGTGTTTAAAGTGAAAAATCCGATTTCTAAAGGAT    544
                     .||.||.|||||.||...||||..|.|.||||||||..|..|.|||||..
BPUM_2533___y    498 TGCTTTCTTCTTAAAATGGTTTCGAATTAAAAATCCAGTGGCAAAAGGGC    547

BSNT_04216___    545 TGGCTCTTGGAACATCCGGACATGCACTTGGTGTAGCGGTCGGGATTGAG    594
                     |.||.|||||.|||||.||||||||||||||.||..|.||.||.||||||
BPUM_2533___y    548 TTGCACTTGGTACATCTGGACATGCACTTGGCGTCTCTGTTGGAATTGAG    597

BSNT_04216___    595 ATGGGAGAAGTTGAAGCTGCGATGGCAAGTATTGCTGTTGTCGTAGTAGG    644
                     |||||.|||||.|||||.||.|||||||||||.||.|||||.||.|||||
BPUM_2533___y    598 ATGGGTGAAGTAGAAGCGGCCATGGCAAGTATCGCCGTTGTGGTCGTAGG    647

BSNT_04216___    645 AGTGGTAACGGTTTTGGTCATCCCTGTGTTCGTGCAGCTGATCGGTGGAT    694
                     |||.||.||.||..|.||||||||..|.||..||||..|.|||..|.|| 
BPUM_2533___y    648 AGTTGTGACCGTCATTGTCATCCCAATCTTTATGCAATTCATCCTTTGA-    696

BSNT_04216___    695 AA    696
                       
BPUM_2533___y    696 --    696


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