Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04213 and BPUM_2531

See Amino acid alignment / Visit BSNT_04213 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:44
# Commandline: needle
#    -asequence dna-align/BSNT_04213___rpmI.1.24716.seq
#    -bsequence dna-align/BPUM_2531___rpmI.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04213___rpmI-BPUM_2531___rpmI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04213___rpmI-BPUM_2531___rpmI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04213___rpmI
# 2: BPUM_2531___rpmI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 201
# Identity:     173/201 (86.1%)
# Similarity:   173/201 (86.1%)
# Gaps:           0/201 ( 0.0%)
# Score: 753.0
# 
#
#=======================================

BSNT_04213___      1 ATGCCAAAAATGAAAACTCACCGCGGATCTGCTAAACGTTTTAAAAAGAC     50
                     |||||||||||||||||||||||||||||||||||||||||.|||||.||
BPUM_2531___r      1 ATGCCAAAAATGAAAACTCACCGCGGATCTGCTAAACGTTTCAAAAAAAC     50

BSNT_04213___     51 AGGTTCTGGGAAGTTAAAACGTTCTCACGCGTACACAAGTCACTTATTCG    100
                     |||||||||.||..|.|||||||||||.|||||||||||||||||.||||
BPUM_2531___r     51 AGGTTCTGGTAAACTTAAACGTTCTCATGCGTACACAAGTCACTTGTTCG    100

BSNT_04213___    101 CCAACAAATCTCAAAAGCAAAAGCGTAAGCTTCGCAAGAGTGCTGTTGTA    150
                     |.|||||||||..|||||||||.|||||..|.||.|||||.||..|.|||
BPUM_2531___r    101 CTAACAAATCTACAAAGCAAAAACGTAAATTGCGTAAGAGCGCAATCGTA    150

BSNT_04213___    151 AGCGCAGGAGACTTCAAACGTATCAAACAAATGCTTGCTAACATCAAGTA    200
                     ||.||.|||||.||||||||.|||||||||...|||||.|||||||||||
BPUM_2531___r    151 AGTGCTGGAGATTTCAAACGCATCAAACAACAACTTGCAAACATCAAGTA    200

BSNT_04213___    201 A    201
                     |
BPUM_2531___r    201 A    201


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.