Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04193 and BPUM_2525
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:43
# Commandline: needle
# -asequence dna-align/BSNT_04193___cstA.1.24716.seq
# -bsequence dna-align/BPUM_2525___cstA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04193___cstA-BPUM_2525___cstA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04193___cstA-BPUM_2525___cstA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04193___cstA
# 2: BPUM_2525___cstA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1820
# Identity: 1376/1820 (75.6%)
# Similarity: 1376/1820 (75.6%)
# Gaps: 46/1820 ( 2.5%)
# Score: 5037.0
#
#
#=======================================
BSNT_04193___ 1 ATGAATGCGGTTACAATTGTGATAGCATCAATGTGTATTTTGGCTATTGC 50
||||||||||||||||||||.|||||.||.|||||||||||.||.|||||
BPUM_2525___c 1 ATGAATGCGGTTACAATTGTCATAGCTTCTATGTGTATTTTAGCGATTGC 50
BSNT_04193___ 51 CTATCGTTTATACGGAACATTTATGATGGTGAAGGTTCTCAAA-GTAAAT 99
|||||||.|.||.||.||.|||||||||||.|||| |||.||| ||.|..
BPUM_2525___c 51 CTATCGTCTTTATGGCACTTTTATGATGGTCAAGG-TCTTAAAGGTGACA 99
BSNT_04193___ 100 GATGACAAGCCGACACCTGCTCACGTGCTTGAGGATGGGAAAGACTATGT 149
||.||..|.||.|||||.||||||....|.|||||.||.|||||.|||||
BPUM_2525___c 100 GACGATCATCCTACACCAGCTCACACATTAGAGGACGGAAAAGATTATGT 149
BSNT_04193___ 150 GCCTACAAATAAATGGGTTTCGTTCGGCCACCATTTTGCCGCGATCGCAG 199
|||.||.|||||.|||||..|.||.||.||.||.|||||.|||||.||||
BPUM_2525___c 150 GCCAACCAATAAGTGGGTCACATTTGGGCATCACTTTGCTGCGATTGCAG 199
BSNT_04193___ 200 CGGCCGGACCGTTGGTCGGACCAATTCTGGCGGCGCAGTTTGGCTATTTG 249
|.|||||.|||||.||.||.||.|||.|.||.||.||.||.||.|||||.
BPUM_2525___c 200 CTGCCGGTCCGTTAGTGGGGCCGATTTTAGCCGCACAATTCGGGTATTTA 249
BSNT_04193___ 250 CCGGG-ATTATTGTGGCTGTTAATCGGGGCGGTAATTGGGGGAGCCGTCC 298
||||| .||.|| |||||||||||.||.||.||.|||||.|||||.||.|
BPUM_2525___c 250 CCGGGTCTTCTT-TGGCTGTTAATTGGCGCAGTGATTGGCGGAGCTGTAC 298
BSNT_04193___ 299 ATGATATTGTGGTGTTGTTTGCATCGATGCACAAAAACGGAAAATCGCTG 348
|||||.||||.||.||.|||||.||||||...|||||.||.||||||.|.
BPUM_2525___c 299 ATGATCTTGTCGTCTTATTTGCGTCGATGAGAAAAAAGGGGAAATCGTTA 348
BSNT_04193___ 349 TCGGAAGTGGCGAAGGCTGAGCTTGGCCCTGTTGCAGGATTTTGTACAGG 398
||.||.||.||.||||..|||||.||.|||||.|||||||||||||||||
BPUM_2525___c 349 TCAGAGGTAGCAAAGGAAGAGCTAGGACCTGTCGCAGGATTTTGTACAGG 398
BSNT_04193___ 399 ACTGTCCATGCTGTTTATCATCACGATCACAATGGCGGGCCTGTCGATGG 448
.||..|.||||||||||||||.||||||||||||||.||..||||.||||
BPUM_2525___c 399 GCTTGCGATGCTGTTTATCATTACGATCACAATGGCAGGTTTGTCCATGG 448
BSNT_04193___ 449 TTGT-CTTGCATGCGCTTGAACGTAATCCATGGGGAACATTTGCGGTAGG 497
|||| ||| ||||||.|.||||||||.||.|||||.||||||||.||.||
BPUM_2525___c 449 TTGTGCTT-CATGCGTTAGAACGTAACCCTTGGGGGACATTTGCAGTCGG 497
BSNT_04193___ 498 GATTACGATACCGATTGCGATGGGTG-TGGGCTTATTTTATAAGAAAACG 546
.||.|||||.||.|||||||||||.| |||.||| |.||||||.||.||.
BPUM_2525___c 498 AATCACGATTCCAATTGCGATGGGGGTTGGTCTT-TATTATAAAAAGACA 546
BSNT_04193___ 547 GGAAATTTAAAGCTCGCTTCAACGGTCGGCTTTCTCTTTTTAATGGCAGG 596
||.||||||||.||.||..||||.|..||.|||.|.||..|.||||..||
BPUM_2525___c 547 GGCAATTTAAAACTGGCGACAACTGCGGGATTTATTTTGCTGATGGTCGG 596
BSNT_04193___ 597 AGTCTTTATCGGTCCATGGGTACAGACT---------ACAGCGCTTGGTG 637
.||.| |||.|||| |.||.| ||.||.|||||.|
BPUM_2525___c 597 TGTAT-------TCCTTGGG--CCGAATATTCAAGGAACGGCACTTGGCG 637
BSNT_04193___ 638 ACTTTTTAACGCTAGATACGAAAACGCTTGCAATCGCGCTT--CCTGTTT 685
|..|||||||.||.|||||.||||||||||| ||..|||| ||..|.|
BPUM_2525___c 638 ATCTTTTAACACTTGATACAAAAACGCTTGC--TCTTGCTTTACCGATCT 685
BSNT_04193___ 686 ACGCGTTTTTTGCGGCTGCGCTTCCCGTTTGGCTGCTTCTGGCTCCGCGT 735
|.||.||||||||.||.||..|.||.|||||||||||.||.||.|||.|.
BPUM_2525___c 686 ATGCTTTTTTTGCTGCGGCATTGCCGGTTTGGCTGCTGCTCGCACCGAGG 735
BSNT_04193___ 736 GATTATTTAAGCAGCTTTATGAAAATCGGTGTTTTTATCGCTTTGATTGT 785
||.||||||||.||||||||||||||.||||||||||||||.|||||||.
BPUM_2525___c 736 GACTATTTAAGTAGCTTTATGAAAATAGGTGTTTTTATCGCATTGATTGC 785
BSNT_04193___ 786 TGGTGTGTTTGTCGTCAATCCGTCCATTCCGTTCCCTGCGTTTACAGAAT 835
|||..|.|||||.||||||||..|.||||..|||||.||||||||.||.|
BPUM_2525___c 786 TGGAATCTTTGTTGTCAATCCAACGATTCAATTCCCAGCGTTTACGGAGT 835
BSNT_04193___ 836 TCGTAAAAGGCGGCGGGCCGGTGCTGGCAGGACCTGTCTGGCCGTTCATC 885
|.||.||.||.||.||.||.||..|.||.||.||||||||||||||.||.
BPUM_2525___c 836 TTGTCAATGGAGGAGGTCCTGTTTTAGCTGGTCCTGTCTGGCCGTTTATT 885
BSNT_04193___ 886 TCAATAACCATCGCCTGCGGGGCGATCTCTGGGTTCCATGCCTTTGTCGG 935
||.||.||.||.||.||||||||.||.|||||.|||||.||.|||||.||
BPUM_2525___c 886 TCGATTACTATTGCTTGCGGGGCCATTTCTGGTTTCCACGCATTTGTTGG 935
BSNT_04193___ 936 TTCAGGAACGACACCGAAAATGCTGAATAAATGGAGTGATATGAAGCCGG 985
.||.|||||.||.||.||.|||||..||..||||||.|||||||||||.|
BPUM_2525___c 936 ATCTGGAACAACGCCTAAGATGCTTGATCGATGGAGCGATATGAAGCCTG 985
BSNT_04193___ 986 TTGCGTTTGGCGCAATGCTTGTTGAGTGTCTTGTTGGCATCATGGCGCTG 1035
|.||.||||||||||||||.||.||.|||||.|||||.||.||||||.|.
BPUM_2525___c 986 TCGCTTTTGGCGCAATGCTAGTCGAATGTCTAGTTGGAATTATGGCGTTA 1035
BSNT_04193___ 1036 ATTGCAGCGACCGCTTTACAGCCTGCTGATTACTTTGCGATTAACAGCAC 1085
|||||.||.||.|||.|.||.||.|.||||||.||||||||.||.||.||
BPUM_2525___c 1036 ATTGCCGCTACGGCTCTTCATCCAGGTGATTATTTTGCGATAAATAGTAC 1085
BSNT_04193___ 1086 GCCTGAGGTTTTCCGTACGCTTGGCATGAATGTC---ATACATTTGCCTG 1132
|||.||.||.|||||.||.||.||.||||.|||| | ||.|| ||..
BPUM_2525___c 1086 GCCAGAAGTGTTCCGGACTCTCGGGATGAGTGTCGAGA-ACCTT--CCGC 1132
BSNT_04193___ 1133 AATTGAGCAGGGAAATCGGTTTGGACTTAGAAGGAAGAACAGGGGGAGCC 1182
|..||||.|.||||||.|||.|.||.||||||||||||||.||.|||||.
BPUM_2525___c 1133 AGCTGAGTAAGGAAATTGGTCTTGATTTAGAAGGAAGAACGGGTGGAGCT 1182
BSNT_04193___ 1183 GTTACGCTTGCGGTGGGGATGACTTATATTTTTACCGGAATGCCGTTTTT 1232
||.||..|.||.||.||.|||.|.|||||.|||||.|||||.|||||.||
BPUM_2525___c 1183 GTGACATTAGCTGTAGGAATGGCGTATATCTTTACGGGAATTCCGTTCTT 1232
BSNT_04193___ 1233 CAGCCATTTGGCCTCATACTTTTTCCAATTTGTCATTATGTTTGAAGCGG 1282
..|.||||||||.||.||.|||||||||||||||||||||||||||||.|
BPUM_2525___c 1233 TGGTCATTTGGCGTCTTATTTTTTCCAATTTGTCATTATGTTTGAAGCTG 1282
BSNT_04193___ 1283 TCTTTATTTTAACAGCGATTGACGCCGGCACACGCGTTGCCCGTTATTTG 1332
|||||||||||||.||.|||||.||.||.|||||.||.||.||||||||.
BPUM_2525___c 1283 TCTTTATTTTAACCGCTATTGATGCAGGAACACGTGTGGCACGTTATTTA 1332
BSNT_04193___ 1333 ATCCAGGATTTCTTCGGGGAGGTGTATAAACCGCTGAA--GAAAACAGAC 1380
||.||.||.||.||.||.||.|..|||||||||||.|| |||| .|||
BPUM_2525___c 1333 ATTCAAGACTTTTTTGGCGAAGCTTATAAACCGCTTAAACGAAA--TGAC 1380
BSNT_04193___ 1381 TGGATTCCGGGCTCTGTATTTGCCAGCGCGCTTGCCTGTTTGATGTGGGG 1430
|||.|.||.||.||.||.||.||.||.||||||||.|||||.||||||||
BPUM_2525___c 1381 TGGGTCCCTGGGTCGGTGTTCGCAAGTGCGCTTGCTTGTTTTATGTGGGG 1430
BSNT_04193___ 1431 GTACTTGCTGTATTCAGGAGATATCGGTTCCATTTGGGCGCTGTTCGGCG 1480
|||.|||||.||.||.|||||.|||||.|||||||||||.|||||.||.|
BPUM_2525___c 1431 GTATTTGCTTTACTCTGGAGACATCGGGTCCATTTGGGCACTGTTTGGGG 1480
BSNT_04193___ 1481 TTTCTAATCAGCTGATGGCTTCAGTGGGGCTGATTATCGGAGCGACCATC 1530
|.||.||.|||.|.|||||.||.||.||.||.||.||||||||.|||.|.
BPUM_2525___c 1481 TGTCAAACCAGTTAATGGCATCGGTCGGACTTATCATCGGAGCAACCGTT 1530
BSNT_04193___ 1531 GTGCTGAAAATCGCTGATAAACGCCGGTACATTCTGACTTGCCTTATCCC 1580
||..|.|||||.||.||||||.|.||.||.||.||||||||..|.||.||
BPUM_2525___c 1531 GTATTAAAAATTGCAGATAAAAGGCGCTATATGCTGACTTGTTTAATTCC 1580
BSNT_04193___ 1581 GCTTGCCTATTTATATGTCACTGTCAATTATGCGGGCTATTGGATGGT-G 1629
.|||||.||.||||||||.||.||.||||||||||||||||||||||| |
BPUM_2525___c 1581 ACTTGCTTACTTATATGTGACAGTGAATTATGCGGGCTATTGGATGGTAG 1630
BSNT_04193___ 1630 CGCAATGTGTATCTCAATCCTGAAGCAGCAGGATATAGTGTATTGAATGG 1679
| .|||||.||.||.|||||.||.|||.|.||.||.|||||..|.||||.
BPUM_2525___c 1631 C-AAATGTATACCTTAATCCCGAGGCATCGGGTTACAGTGTGCTAAATGC 1679
BSNT_04193___ 1680 CGTATTATCTATCATCATGCTGGTGTTAGGCTTCATCATTATTGTGGCGG 1729
.||..|.||.|||||.||||||.|.|||||.||..|.|||||||||...|
BPUM_2525___c 1680 GGTGCTGTCAATCATTATGCTGATCTTAGGATTTGTGATTATTGTGTTTG 1729
BSNT_04193___ 1730 CTGTGAAAAAATGGGCGCAGATGTGGAAAGATCCGA-GCTTAAGGATGGA 1778
|..|.||||||||||...|.||.|||...|||||.| |||| .|.|||||
BPUM_2525___c 1730 CGATTAAAAAATGGGTTGACATTTGGCGTGATCCAACGCTT-CGAATGGA 1778
BSNT_04193___ 1779 AGCATCTAT-ACCGGTCTAG 1797
|.||.|.|| ||.|| |||.
BPUM_2525___c 1779 AACACCGATCACTGG-CTAA 1797
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