Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04180 and BPUM_2522

See Amino acid alignment / Visit BSNT_04180 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:42
# Commandline: needle
#    -asequence dna-align/BSNT_04180___pheS.1.24716.seq
#    -bsequence dna-align/BPUM_2522___pheS.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04180___pheS-BPUM_2522___pheS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04180___pheS-BPUM_2522___pheS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04180___pheS
# 2: BPUM_2522___pheS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1040
# Identity:     805/1040 (77.4%)
# Similarity:   805/1040 (77.4%)
# Gaps:          10/1040 ( 1.0%)
# Score: 3063.0
# 
#
#=======================================

BSNT_04180___      1 ATGGAAGAAAAGCTAAAACAGCTGGAACAAGAAGCTTTAGAACAAGTAGA     50
                     |||.||||||.|.||||||||||.|||..||||||..|||...|.||.||
BPUM_2522___p      1 ATGCAAGAAACGTTAAAACAGCTTGAAACAGAAGCGATAGCGAAGGTTGA     50

BSNT_04180___     51 AGCGGCAAGCTCATTGAAGGTTGTCAATGATATTCGGGTGCAATATCTCG    100
                     |||.||.|||||..|.||.|..||||||||.||.||.||.||||||.|.|
BPUM_2522___p     51 AGCAGCTAGCTCGCTCAAAGAAGTCAATGACATACGTGTTCAATATTTAG    100

BSNT_04180___    101 GAAAAAAAGGGCCGATTACAGAAGTGCTGCGCGGAATGGGCAAGCTTTCT    150
                     |.||||||||.|||||.|||||.||.||.|||||||||||||||||.||.
BPUM_2522___p    101 GGAAAAAAGGACCGATCACAGAGGTACTCCGCGGAATGGGCAAGCTCTCC    150

BSNT_04180___    151 GCTGAGGAACGTCCAAAAATGGGGGCCCTCGCGAACGAAGTAAGGGAGCG    200
                     ||.||.|||.|.||.||||||||.||.|||||.||||||||.||.||||.
BPUM_2522___p    151 GCAGAAGAAAGACCGAAAATGGGCGCACTCGCAAACGAAGTGAGAGAGCA    200

BSNT_04180___    201 TATTGCCAATGCGATTGCTGACAAAAACGAGAAGCTTGAAGAAGAGGAAA    250
                     .|||||...|||.||||||||.|||||.||..||||.|||.||||.|||.
BPUM_2522___p    201 GATTGCTGGTGCTATTGCTGAAAAAAATGAACAGCTGGAAAAAGAAGAAG    250

BSNT_04180___    251 TGAAACAGAAGCTTGCAGGACAGACAATTGACGTCACGCTGCCGGGGAAC    300
                     ||||..||||.|||||....||.||.||.||.||.||..||||.|..||.
BPUM_2522___p    251 TGAAGAAGAAACTTGCGTCTCAAACGATCGATGTGACATTGCCAGCAAAT    300

BSNT_04180___    301 CCTGTTGCAGTCGGCGGC-CGCCATCCGCTCACTGTTGTCATTGAAGAAA    349
                     ||..|...|.|.|| ||| .|.|||||..|.||..||||..|||||||.|
BPUM_2522___p    301 CCAATCAAAATAGG-GGCAAGACATCCATTAACGATTGTTGTTGAAGATA    349

BSNT_04180___    350 TTGAAGATTTATTTATCGGTATGGGCTACACAGTCGAGGAAGGGCCAGAG    399
                     ||||||||||||||||.||.||||||||.||.||.||.|||||.||.|||
BPUM_2522___p    350 TTGAAGATTTATTTATTGGCATGGGCTATACCGTTGAAGAAGGTCCTGAG    399

BSNT_04180___    400 GTTGAAACGGATTACTACAACTTCGAATCGCTCAATCTTCCGAAAGAACA    449
                     ||.||||||||||||||.|||||.|||.||.|.||||||||.||.||.||
BPUM_2522___p    400 GTAGAAACGGATTACTATAACTTTGAAGCGTTGAATCTTCCAAAGGAGCA    449

BSNT_04180___    450 CCCTGCGCGCGATATGCAGGACAGCTTTTACATCACAGAGGAAACTTTGA    499
                     .||.||.||.|||||||||||||||||.|||||.||.|||||.||..||.
BPUM_2522___p    450 TCCGGCACGTGATATGCAGGACAGCTTCTACATTACCGAGGATACACTGC    499

BSNT_04180___    500 TGAGAACGCAAACTTCTCCTGTCCAAACACGGACGATGGAAAAGCATAAA    549
                     |.|||||.|||||.||.||.||.|||.|.||.||..|.|||||..|||||
BPUM_2522___p    500 TCAGAACACAAACGTCACCAGTTCAAGCGCGTACACTTGAAAAATATAAA    549

BSNT_04180___    550 GGCAAAGGTCCCGTTAAAATCATTTGCCCGGGTAAAGTATATCGCCGTGA    599
                     ||..|||||||.||.||||||||||||||.||.|||||||||.|.||.||
BPUM_2522___p    550 GGACAAGGTCCTGTGAAAATCATTTGCCCTGGGAAAGTATATAGACGAGA    599

BSNT_04180___    600 TAACGATGATGCGACGCACTCTCACCAATTTATGCAAATTGAAGGGCTTG    649
                     .|..|||||.|||||.||.||.||.|||||||||||.|||||||||||||
BPUM_2522___p    600 CAGTGATGACGCGACTCATTCACATCAATTTATGCAGATTGAAGGGCTTG    649

BSNT_04180___    650 TCGTTGACAAAAACATCAGCATGAGTGATTTAAAAGGAACGCTTGAACTC    699
                     |.|||||..|.||.||.||||||||||||.|||||||.|||||||||...
BPUM_2522___p    650 TTGTTGATCACAATATTAGCATGAGTGATCTAAAAGGTACGCTTGAAACA    699

BSNT_04180___    700 GTTGCGAAAAAAATGTTCGGGCAAGACCGTGAAATCAGACTCCGCCCAAG    749
                     ||.||.|.|||||||||.||..||||.||||||||.|||||.||.|||||
BPUM_2522___p    700 GTCGCAAGAAAAATGTTTGGTGAAGATCGTGAAATTAGACTGCGTCCAAG    749

BSNT_04180___    750 CTTCTTCCCGTTTACTGAGCCTTCAGTAGAAGTGGATGTGACATGCTTTA    799
                     |||.|||||.||.||.||.||.||.|||||||||||||||.|.|||||||
BPUM_2522___p    750 CTTTTTCCCATTCACAGAACCATCTGTAGAAGTGGATGTGTCTTGCTTTA    799

BSNT_04180___    800 AATGTGGTGGAAACGGCTGCTCAGTATGTAAAGGAACAGGCTGGATTGAA    849
                     |||||||.|||||.|||||.||.||||||||||||||||||||||||||.
BPUM_2522___p    800 AATGTGGAGGAAAAGGCTGTTCTGTATGTAAAGGAACAGGCTGGATTGAG    849

BSNT_04180___    850 ATCCTCGGTGCCGGAATGGTTCACCCGAACGTGCTTAAAATG-GCTGGCT    898
                     ||..|.||.||.|||||||||||.|||||.||.||.|||||| || ||.|
BPUM_2522___p    850 ATTTTAGGAGCTGGAATGGTTCATCCGAATGTCCTGAAAATGAGC-GGAT    898

BSNT_04180___    899 TTGATCCGAAGGAA---TATCAGGGCTTCGCATTCGGAATGGGTGTTGAG    945
                     |||||||   ||||   ||.||.|||||.||.||.||||||||||||||.
BPUM_2522___p    899 TTGATCC---GGAAACTTACCAAGGCTTTGCTTTTGGAATGGGTGTTGAA    945

BSNT_04180___    946 CGCATCGCGATGCTGAAATACGGCATTGATGATATCCGCCACTTCTATAC    995
                     ||.||.||||||||.||||||||||||||||||||.||.||.|||||.||
BPUM_2522___p    946 CGGATTGCGATGCTCAAATACGGCATTGATGATATTCGTCATTTCTACAC    995

BSNT_04180___    996 AAACGATGTCAGATTTATTTCGCAGTTTAAACAGGCGTAA   1035
                     |||.|||.|.|||||.|....|||.||.||.||||..|||
BPUM_2522___p    996 AAATGATATTAGATTCACAAAGCAATTCAAGCAGGACTAA   1035


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.