Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04179 and BPUM_2521

See Amino acid alignment / Visit BSNT_04179 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:42
# Commandline: needle
#    -asequence dna-align/BSNT_04179___pheT.1.24716.seq
#    -bsequence dna-align/BPUM_2521___pheT.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04179___pheT-BPUM_2521___pheT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04179___pheT-BPUM_2521___pheT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04179___pheT
# 2: BPUM_2521___pheT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2503
# Identity:    1768/2503 (70.6%)
# Similarity:  1768/2503 (70.6%)
# Gaps:         176/2503 ( 7.0%)
# Score: 5908.0
# 
#
#=======================================

BSNT_04179___      1 ATGTTTGTTTCTTATAAATGGTTAGAGGATTATGTTGATTTAAAAGGCAT     50
                     |||||||||||.||||||||||||||.||.|||||.||||||.|||||||
BPUM_2521___p      1 ATGTTTGTTTCATATAAATGGTTAGAAGACTATGTCGATTTAGAAGGCAT     50

BSNT_04179___     51 GGACCCGGCTGTTCTTGCTGAAAAAATTACAAGAGCCGGTATTGAGGTTG    100
                     ..|.||||.||...|.||.||||||||.||||||...||.|||||.||.|
BPUM_2521___p     51 TCAGCCGGATGAATTAGCAGAAAAAATCACAAGAAGTGGAATTGAAGTGG    100

BSNT_04179___    101 AAGGAATTGAATACAAAGGAGAAGGCATCAAAGGCGTTGTCATCGGCCAT    150
                     |||...|||||||.|||||.||||||||.|||||.||||||.|.||.||.
BPUM_2521___p    101 AAGCCGTTGAATATAAAGGCGAAGGCATTAAAGGAGTTGTCGTTGGACAC    150

BSNT_04179___    151 GTGCTGGAGCGCGAGCAGCACCCGAATGCTGATAAGCTGAATAAGTGCCT    200
                     ||..|||||||.||.||||||||||||||.||.||..|.||.||.||.||
BPUM_2521___p    151 GTCGTGGAGCGAGAACAGCACCCGAATGCCGACAAATTAAACAAATGTCT    200

BSNT_04179___    201 TGTGGATATCGGAGCTGAAGCCCCTGTACAAATCATTTGCGGCGCGCCAA    250
                     .|||||||||||||..||.|..||.||.|||||.||||||||.|||||.|
BPUM_2521___p    201 CGTGGATATCGGAGAAGACGAACCGGTTCAAATAATTTGCGGGGCGCCGA    250

BSNT_04179___    251 ATGTGGATAAGGGACAAAAAGTCGCAGTTGCAACAGTCGGAGCAGTGCTG    300
                     ||||||||||.||.|||.|.||.||.||.|||||.||.||.|||||.||.
BPUM_2521___p    251 ATGTGGATAAAGGTCAATATGTGGCTGTCGCAACGGTTGGCGCAGTCCTT    300

BSNT_04179___    301 CCGGGCAATTTCAAAATCAAAAAAGCCAAGCTTCGCGGTGAAGAATCAAA    350
                     ||.||.||.||.|||||.||||||||.|||||.|||||.|||||.||..|
BPUM_2521___p    301 CCTGGGAACTTTAAAATTAAAAAAGCAAAGCTGCGCGGCGAAGAGTCTCA    350

BSNT_04179___    351 TGGCATGATCTGTTCCTTACAGGAGCTTGGCATCGAAAGCAAACTTGTGG    400
                     |||||||||.|||||..|.||.||..|.||..|||||||||||||.||..
BPUM_2521___p    351 TGGCATGATTTGTTCTCTGCAAGAATTAGGTGTCGAAAGCAAACTCGTAC    400

BSNT_04179___    401 CGAAGGAGTATGCAGAAGGCATTTTCGTATTCCCGAATGACGCTGAAAC-    449
                     |.||.||.|||||||||||.|||||.||.|||||.||||||| |.||.| 
BPUM_2521___p    401 CAAAAGAATATGCAGAAGGTATTTTTGTTTTCCCAAATGACG-TCAACCC    449

BSNT_04179___    450 --AGGAAGCGATGCCTTAGCGGCTTTACAGCTTGACGATGCGATTCTTGA    497
                       .||||  ||||||.|...|||..|.|||.|.||||||||..|.|||||
BPUM_2521___p    450 CGGGGAA--GATGCCCTTCAGGCACTTCAGTTAGACGATGCAGTACTTGA    497

BSNT_04179___    498 GCTGGGTTTAACGCCAAACCGCGCCGATGCCATGAACATGCTTGGTGTTG    547
                     |||.||.|||||||||||||||||.||||||.||||.|||||.|||||||
BPUM_2521___p    498 GCTTGGCTTAACGCCAAACCGCGCGGATGCCCTGAATATGCTAGGTGTTG    547

BSNT_04179___    548 CTTACGAGGTTGCGGCGATTTTAGACACTGAGGTAAAGCTTCCGCAAACG    597
                     |.||.||||||||.||.||.||||..|..|||.|.||.|||||..|.||.
BPUM_2521___p    548 CCTATGAGGTTGCAGCCATCTTAGGGAAAGAGATCAAACTTCCTGATACA    597

BSNT_04179___    598 G---ATTACCCGGCTGCTTCAGAACAAGCGTCTGATTACATTTCAGTCAA    644
                     |   ||.||.||   .||||||||.||||..|.||.||.|||||.||.||
BPUM_2521___p    598 GCACATGACACG---TCTTCAGAAAAAGCAGCAGACTATATTTCTGTGAA    644

BSNT_04179___    645 AATTGAAGATCAAGAAGCGAACCCGCTGTACACTGCAAAAATCATTAAAA    694
                     |||||||||||||||||||||.||.||.||..||||.||.||||||||||
BPUM_2521___p    645 AATTGAAGATCAAGAAGCGAATCCACTTTATGCTGCGAAGATCATTAAAA    694

BSNT_04179___    695 ATGTCACGATTGCTCCGTCACCGCTTTGGATGCAGACAAAACTGATGAAT    744
                     ||||.|.|||||..||..|||||||||||||.||.||||.|.||||||||
BPUM_2521___p    695 ATGTAAAGATTGGACCAGCACCGCTTTGGATTCAAACAAGATTGATGAAT    744

BSNT_04179___    745 GCAGGCATTCGTCCGCACAACAACGTCGTTGACATCACAAATTTTGTCCT    794
                     |||||||||||.||....|||||.|||||.||.||.|||||.|||||.||
BPUM_2521___p    745 GCAGGCATTCGCCCAATTAACAATGTCGTCGATATTACAAACTTTGTACT    794

BSNT_04179___    795 GTTGGAATACGGACAGCCGCTTCATGCATTTGATTATGACAGATTTGGCT    844
                     |.|.||||||||.|||||.||||||||||||||||||||..|.|||||.|
BPUM_2521___p    795 GCTTGAATACGGTCAGCCACTTCATGCATTTGATTATGATCGCTTTGGTT    844

BSNT_04179___    845 CTAAGGAAGTCGTAGTAAGAAAAGCAGCTGAGAATGAAATGATCGTC--A    892
                     |.|||.||||.||.|||.|.||||||.||||.|.|||||..||  ||  |
BPUM_2521___p    845 CAAAGCAAGTGGTCGTACGTAAAGCAACTGATAGTGAAAGCAT--TCAAA    892

BSNT_04179___    893 CTCTTGATGATCAAGAACGTAAGCTGTCCGCCGATCACCTTGTTATTACA    942
                     |.||||||||.|||||.||||..||.||..|..|.||.|||||.||.||.
BPUM_2521___p    893 CACTTGATGAGCAAGAGCGTACACTTTCATCAAAGCATCTTGTCATCACG    942

BSNT_04179___    943 AACGGAATGAAAGCGCAGGCCGTTGCGGGTGTCATGGGAGGAGCAGAGTC    992
                     ||.||.|.|||||||||.||.||.||.||.||||||||.||....||.||
BPUM_2521___p    943 AATGGCACGAAAGCGCACGCTGTCGCAGGCGTCATGGGCGGCCTTGAATC    992

BSNT_04179___    993 AGAGGTTCAGGAAGATACGAAAACGATTTTGCTT-GAGGCTGCGTATTTC   1041
                     ||||||.|..||.||.||||.|||||||.| ||| ||.||.||.||||||
BPUM_2521___p    993 AGAGGTGCGTGATGAAACGACAACGATTCT-CTTAGAAGCGGCATATTTC   1041

BSNT_04179___   1042 AACGGGCAGACGGTTCG-CAAGGCTTCCAAAGACCTTGGTTTGAGAAGTG   1090
                     |||||.||.||.||.|| ||| ||.||.|.|||..|.||..|..|.||||
BPUM_2521___p   1042 AACGGTCAAACAGTCCGTCAA-GCATCTAGAGATTTAGGGCTTCGCAGTG   1090

BSNT_04179___   1091 ACTCAAGCGTAAGATTTGAAAAAGGAATTGATCCGGCGC-GCGTACG---   1136
                     |.|||||||.|.||||||||||||||.||||||   ||| .||||||   
BPUM_2521___p   1091 AATCAAGCGCACGATTTGAAAAAGGACTTGATC---CGCAACGTACGAAA   1137

BSNT_04179___   1137 TCTTGCAGCAGAACGGGCTGCGCAGCTGATC--CATCTGTATGCCGGCGG   1184
                     || .|||||.|||.|.||.|||||..|||||  ||||  |||||.||.||
BPUM_2521___p   1138 TC-AGCAGCCGAAAGAGCAGCGCAATTGATCAGCATC--TATGCAGGTGG   1184

BSNT_04179___   1185 TGAGGTGCTTGCAGGAACAGTTGAGGAAGATCACCTGACAATCGAAGCAA   1234
                     |||.|||.|....||.||.||.||||||.|.||||      |.|||.|||
BPUM_2521___p   1185 TGAAGTGTTAAGTGGGACTGTGGAGGAAAACCACC------TTGAAACAA   1228

BSNT_04179___   1235 ATA------ACATTCACGTATCTGCTGACAAAGTGAGCAGCGTTCTAGGC   1278
                     |||      .|||.||||||||..||||....||||.||..||.||.|||
BPUM_2521___p   1229 ATATGAATGTCATCCACGTATCCACTGAGCGTGTGAACAAGGTGCTTGGC   1278

BSNT_04179___   1279 CTGACGA--TCAGTAAAGAAGAACTGA-TCAGCATTT---ATAAACGTCT   1322
                     .|||..|  |||  ||||||||..||| ||| .||||   |.|||   ||
BPUM_2521___p   1279 ATGAGCATTTCA--AAAGAAGATATGATTCA-AATTTTCAACAAA---CT   1322

BSNT_04179___   1323 CGGTTTTACGGTCGGTGAAGCGGGTGAACTTCTCGTTGTGACTGTCCCAT   1372
                     .||.|||||.||.||.|||.|...|||..|.||.|||||.||.||.||.|
BPUM_2521___p   1323 GGGCTTTACAGTGGGCGAATCAAATGACGTACTTGTTGTAACGGTTCCTT   1372

BSNT_04179___   1373 CACGCCGCGGCGACATTACAATAGAAGAGGATTTAATCGAAGAAGCGGCA   1422
                     |.|||.|....||.||.|||||.|||||.|||.|.||.|||||||..||.
BPUM_2521___p   1373 CTCGCAGAATGGATATCACAATTGAAGAAGATCTCATTGAAGAAGTTGCG   1422

BSNT_04179___   1423 AGACTGTACGGCTACGATAACATTCCGTCTACGCTTCCTGAGACAGCGGG   1472
                     |||.|.||||||||||||||.||.||.|||||.||.||||.||||||.||
BPUM_2521___p   1423 AGATTATACGGCTACGATAATATCCCATCTACACTACCTGCGACAGCTGG   1472

BSNT_04179___   1473 AACTACA---GGCGGATTAACGCCATACCAGGCAAAACGCCGTAAAGTCA   1519
                        ||||   ||.||..|.|||||||||||.|..||.||..|.||.||.|
BPUM_2521___p   1473 ---TACAGTTGGAGGTCTCACGCCATACCAAGTGAAGCGTAGAAAGGTGA   1519

BSNT_04179___   1520 GACGCTTCCTTGAAGGCGCAGG-CTTATCACAAGCCATCACTTACTCACT   1568
                     ||||.|||.|.||||||||||| ||| ||.|||.|.|||||.||.|||.|
BPUM_2521___p   1520 GACGTTTCTTAGAAGGCGCAGGTCTT-TCTCAATCGATCACGTATTCATT   1568

BSNT_04179___   1569 GACAAACGAGAAGAAAGCGGCAGCGTTTGCGATTGAAAAGTCA--TT---   1613
                     ||||||..||.|.|||.|..|.||.||||| ||||  ||.|||  ||   
BPUM_2521___p   1569 GACAAATCAGCATAAATCTACTGCCTTTGC-ATTG--AATTCAGCTTATA   1615

BSNT_04179___   1614 ---GAATACTGTGCTTGCGCTTCCAATGAGTGAAGAAAGAAGCATTCTCA   1660
                        .||.|||.|.||||     |||||||||||.|||.||||..|.||.|
BPUM_2521___p   1616 AAACAAGACTTTCCTTG-----CCAATGAGTGAGGAACGAAGTGTGCTTA   1660

BSNT_04179___   1661 GACACAGTCTTGTTCCGAATCTGCTTGATTCTGTTTCTTACAACCTCGCG   1710
                     ||||.|||||..|.||.||..|.||||||||.|||.|.||.|||.|.||.
BPUM_2521___p   1661 GACAAAGTCTGCTGCCAAACTTACTTGATTCAGTTGCCTATAACTTGGCT   1710

BSNT_04179___   1711 AGGCAGACTGACTCAGTTGCACTGTACGAAGTCGGCTCCGTTTTCCT-GA   1759
                     ||.||..||||.|||.|||...|.||.|||...||.||.||.|||.| |.
BPUM_2521___p   1711 AGACAAGCTGATTCATTTGGCTTTTATGAAACGGGTTCTGTGTTCTTAGC   1760

BSNT_04179___   1760 CGAAG--GAAGAGGACACAAAACCTGTTGAAACAGAACGCGTAGCAGGAG   1807
                     .||||  ||||.||   |||||||.||.||||.|||||..||.||.||.|
BPUM_2521___p   1761 AGAAGCTGAAGGGG---CAAAACCAGTGGAAAAAGAACATGTCGCTGGGG   1807

BSNT_04179___   1808 CTGTTACCGGATTATGGCGCAAGCAGCTATGGCAGGGTGAAAAGAAACCA   1857
                     |..|.||.||.|||||||..||..|.||.||||||||.||.||.|||.|.
BPUM_2521___p   1808 CGCTGACAGGCTTATGGCATAAAAATCTTTGGCAGGGCGAGAAAAAAGCT   1857

BSNT_04179___   1858 GTTGATTTCTTTGTTGTCAAAGGAATTGTAGAAGGGCTGTTAGACAAAC-   1906
                     ||.|||||.|.|||.|..||||||||||.||||||.||.||.||.||.| 
BPUM_2521___p   1858 GTCGATTTTTATGTAGCGAAAGGAATTGCAGAAGGTCTATTTGAAAAGCT   1907

BSNT_04179___   1907 -------TCAACGTCCTAGACAGCATTGAATTTGTACAGTCTGAACGCAA   1949
                            |||  |.||.|      ||...||.|||.||..|.||.||..|
BPUM_2521___p   1908 TGGTGTATCA--GGCCAA------ATCACATATGTTCAAGCAGAGCGTGA   1949

BSNT_04179___   1950 ACAGCTGCATCCGGGCAGAACAGC----GAACATTTTATTG--------A   1987
                     |...||.||.||.||..|.|||||    |..|||||.|.||        |
BPUM_2521___p   1950 AGGTCTTCACCCAGGACGTACAGCAGATGTTCATTTAAATGGAAAAGTCA   1999

BSNT_04179___   1988 ATGG--TTCTCTGATCGGCTTCATCGGCCAAGTCCACCCTTCATTGGAAA   2035
                     .|||  ||.| ||.|..|||||||    |.||||         .|.||||
BPUM_2521___p   2000 TTGGGTTTGT-TGCTGCGCTTCAT----CCAGTC---------GTTGAAA   2035

BSNT_04179___   2036 AAGAACTGGATATAAAGGAAACATACGTATTTGAGCTCGATCTT----CA   2081
                     |.|||.|.|||.||||.||||||||.||.||.|||.|.||| ||    .|
BPUM_2521___p   2036 AGGAATTAGATTTAAAAGAAACATATGTCTTCGAGTTTGAT-TTAACAGA   2084

BSNT_04179___   2082 TGCGTTGCTCGCGGCAGAAACAGCACCGCT-TG---TTTACACGGCGATT   2127
                     ||   ||.|..||.|.|||.|  ||..|.| ||   |.||||  ||.|||
BPUM_2521___p   2085 TG---TGATGACGTCTGAATC--CAAGGATATGAAATATACA--GCAATT   2127

BSNT_04179___   2128 CCGAAATATCCGT-CTGTGACACGTGATATTGCTCTTGT-----AACAG-   2170
                     ||||.|| |||.| ||||||||.|.||||||||.|||||     |.||| 
BPUM_2521___p   2128 CCGAGAT-TCCCTGCTGTGACAAGAGATATTGCACTTGTCGTAGATCAGC   2176

BSNT_04179___   2171 ATAAAACCGTCACAAGCGGACAGCTCGAG-AGCGTCATTAAAGAGGCTGG   2219
                     |||      ||.|||||||||||||.||| || |||||....||.||.||
BPUM_2521___p   2177 ATA------TCTCAAGCGGACAGCTGGAGCAG-GTCATCTTTGAAGCAGG   2219

BSNT_04179___   2220 CGGCAAGCTTCTGAAAGAGGTAACCGTCTTTGACGTATACGAAGGCGAAC   2269
                     |||.||..|.||||..||..||.||||||||||.||.||.|||||.||||
BPUM_2521___p   2220 CGGGAATTTACTGACTGATCTATCCGTCTTTGATGTGTATGAAGGTGAAC   2269

BSNT_04179___   2270 ATATGGAGGAAGGCAAGAAGTCAGTCGCTTTCTCACTCCAGTATGTCAAC   2319
                     |.|||||.||||||||.|||||.||.||.|||||.|||||.|||.|.||.
BPUM_2521___p   2270 ACATGGAAGAAGGCAAAAAGTCTGTTGCATTCTCTCTCCAATATTTAAAT   2319

BSNT_04179___   2320 CCTGAACAAACACTGACTGAAGAAGAAGTGACAAAGGCGC-------ACA   2362
                     ||.|||||||||.||||.||.||||||||  |||   |||       |||
BPUM_2521___p   2320 CCGGAACAAACATTGACAGAGGAAGAAGT--CAA---CGCTGTTCATACA   2364

BSNT_04179___   2363 GCAAAGTGCTGAAAGCGTTAGAAGACACATATCAAGCTGTTTTAAGAGGC   2412
                       |||||..|||||||.||||||||.||.||||||||.||.||..|.||.
BPUM_2521___p   2365 --AAAGTATTGAAAGCATTAGAAGATACGTATCAAGCCGTCTTGCGCGGT   2412

BSNT_04179___   2413 TGA   2415
                     |.|
BPUM_2521___p   2413 TAA   2415


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