Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04179 and BPUM_2521
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:42
# Commandline: needle
# -asequence dna-align/BSNT_04179___pheT.1.24716.seq
# -bsequence dna-align/BPUM_2521___pheT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04179___pheT-BPUM_2521___pheT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04179___pheT-BPUM_2521___pheT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04179___pheT
# 2: BPUM_2521___pheT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2503
# Identity: 1768/2503 (70.6%)
# Similarity: 1768/2503 (70.6%)
# Gaps: 176/2503 ( 7.0%)
# Score: 5908.0
#
#
#=======================================
BSNT_04179___ 1 ATGTTTGTTTCTTATAAATGGTTAGAGGATTATGTTGATTTAAAAGGCAT 50
|||||||||||.||||||||||||||.||.|||||.||||||.|||||||
BPUM_2521___p 1 ATGTTTGTTTCATATAAATGGTTAGAAGACTATGTCGATTTAGAAGGCAT 50
BSNT_04179___ 51 GGACCCGGCTGTTCTTGCTGAAAAAATTACAAGAGCCGGTATTGAGGTTG 100
..|.||||.||...|.||.||||||||.||||||...||.|||||.||.|
BPUM_2521___p 51 TCAGCCGGATGAATTAGCAGAAAAAATCACAAGAAGTGGAATTGAAGTGG 100
BSNT_04179___ 101 AAGGAATTGAATACAAAGGAGAAGGCATCAAAGGCGTTGTCATCGGCCAT 150
|||...|||||||.|||||.||||||||.|||||.||||||.|.||.||.
BPUM_2521___p 101 AAGCCGTTGAATATAAAGGCGAAGGCATTAAAGGAGTTGTCGTTGGACAC 150
BSNT_04179___ 151 GTGCTGGAGCGCGAGCAGCACCCGAATGCTGATAAGCTGAATAAGTGCCT 200
||..|||||||.||.||||||||||||||.||.||..|.||.||.||.||
BPUM_2521___p 151 GTCGTGGAGCGAGAACAGCACCCGAATGCCGACAAATTAAACAAATGTCT 200
BSNT_04179___ 201 TGTGGATATCGGAGCTGAAGCCCCTGTACAAATCATTTGCGGCGCGCCAA 250
.|||||||||||||..||.|..||.||.|||||.||||||||.|||||.|
BPUM_2521___p 201 CGTGGATATCGGAGAAGACGAACCGGTTCAAATAATTTGCGGGGCGCCGA 250
BSNT_04179___ 251 ATGTGGATAAGGGACAAAAAGTCGCAGTTGCAACAGTCGGAGCAGTGCTG 300
||||||||||.||.|||.|.||.||.||.|||||.||.||.|||||.||.
BPUM_2521___p 251 ATGTGGATAAAGGTCAATATGTGGCTGTCGCAACGGTTGGCGCAGTCCTT 300
BSNT_04179___ 301 CCGGGCAATTTCAAAATCAAAAAAGCCAAGCTTCGCGGTGAAGAATCAAA 350
||.||.||.||.|||||.||||||||.|||||.|||||.|||||.||..|
BPUM_2521___p 301 CCTGGGAACTTTAAAATTAAAAAAGCAAAGCTGCGCGGCGAAGAGTCTCA 350
BSNT_04179___ 351 TGGCATGATCTGTTCCTTACAGGAGCTTGGCATCGAAAGCAAACTTGTGG 400
|||||||||.|||||..|.||.||..|.||..|||||||||||||.||..
BPUM_2521___p 351 TGGCATGATTTGTTCTCTGCAAGAATTAGGTGTCGAAAGCAAACTCGTAC 400
BSNT_04179___ 401 CGAAGGAGTATGCAGAAGGCATTTTCGTATTCCCGAATGACGCTGAAAC- 449
|.||.||.|||||||||||.|||||.||.|||||.||||||| |.||.|
BPUM_2521___p 401 CAAAAGAATATGCAGAAGGTATTTTTGTTTTCCCAAATGACG-TCAACCC 449
BSNT_04179___ 450 --AGGAAGCGATGCCTTAGCGGCTTTACAGCTTGACGATGCGATTCTTGA 497
.|||| ||||||.|...|||..|.|||.|.||||||||..|.|||||
BPUM_2521___p 450 CGGGGAA--GATGCCCTTCAGGCACTTCAGTTAGACGATGCAGTACTTGA 497
BSNT_04179___ 498 GCTGGGTTTAACGCCAAACCGCGCCGATGCCATGAACATGCTTGGTGTTG 547
|||.||.|||||||||||||||||.||||||.||||.|||||.|||||||
BPUM_2521___p 498 GCTTGGCTTAACGCCAAACCGCGCGGATGCCCTGAATATGCTAGGTGTTG 547
BSNT_04179___ 548 CTTACGAGGTTGCGGCGATTTTAGACACTGAGGTAAAGCTTCCGCAAACG 597
|.||.||||||||.||.||.||||..|..|||.|.||.|||||..|.||.
BPUM_2521___p 548 CCTATGAGGTTGCAGCCATCTTAGGGAAAGAGATCAAACTTCCTGATACA 597
BSNT_04179___ 598 G---ATTACCCGGCTGCTTCAGAACAAGCGTCTGATTACATTTCAGTCAA 644
| ||.||.|| .||||||||.||||..|.||.||.|||||.||.||
BPUM_2521___p 598 GCACATGACACG---TCTTCAGAAAAAGCAGCAGACTATATTTCTGTGAA 644
BSNT_04179___ 645 AATTGAAGATCAAGAAGCGAACCCGCTGTACACTGCAAAAATCATTAAAA 694
|||||||||||||||||||||.||.||.||..||||.||.||||||||||
BPUM_2521___p 645 AATTGAAGATCAAGAAGCGAATCCACTTTATGCTGCGAAGATCATTAAAA 694
BSNT_04179___ 695 ATGTCACGATTGCTCCGTCACCGCTTTGGATGCAGACAAAACTGATGAAT 744
||||.|.|||||..||..|||||||||||||.||.||||.|.||||||||
BPUM_2521___p 695 ATGTAAAGATTGGACCAGCACCGCTTTGGATTCAAACAAGATTGATGAAT 744
BSNT_04179___ 745 GCAGGCATTCGTCCGCACAACAACGTCGTTGACATCACAAATTTTGTCCT 794
|||||||||||.||....|||||.|||||.||.||.|||||.|||||.||
BPUM_2521___p 745 GCAGGCATTCGCCCAATTAACAATGTCGTCGATATTACAAACTTTGTACT 794
BSNT_04179___ 795 GTTGGAATACGGACAGCCGCTTCATGCATTTGATTATGACAGATTTGGCT 844
|.|.||||||||.|||||.||||||||||||||||||||..|.|||||.|
BPUM_2521___p 795 GCTTGAATACGGTCAGCCACTTCATGCATTTGATTATGATCGCTTTGGTT 844
BSNT_04179___ 845 CTAAGGAAGTCGTAGTAAGAAAAGCAGCTGAGAATGAAATGATCGTC--A 892
|.|||.||||.||.|||.|.||||||.||||.|.|||||..|| || |
BPUM_2521___p 845 CAAAGCAAGTGGTCGTACGTAAAGCAACTGATAGTGAAAGCAT--TCAAA 892
BSNT_04179___ 893 CTCTTGATGATCAAGAACGTAAGCTGTCCGCCGATCACCTTGTTATTACA 942
|.||||||||.|||||.||||..||.||..|..|.||.|||||.||.||.
BPUM_2521___p 893 CACTTGATGAGCAAGAGCGTACACTTTCATCAAAGCATCTTGTCATCACG 942
BSNT_04179___ 943 AACGGAATGAAAGCGCAGGCCGTTGCGGGTGTCATGGGAGGAGCAGAGTC 992
||.||.|.|||||||||.||.||.||.||.||||||||.||....||.||
BPUM_2521___p 943 AATGGCACGAAAGCGCACGCTGTCGCAGGCGTCATGGGCGGCCTTGAATC 992
BSNT_04179___ 993 AGAGGTTCAGGAAGATACGAAAACGATTTTGCTT-GAGGCTGCGTATTTC 1041
||||||.|..||.||.||||.|||||||.| ||| ||.||.||.||||||
BPUM_2521___p 993 AGAGGTGCGTGATGAAACGACAACGATTCT-CTTAGAAGCGGCATATTTC 1041
BSNT_04179___ 1042 AACGGGCAGACGGTTCG-CAAGGCTTCCAAAGACCTTGGTTTGAGAAGTG 1090
|||||.||.||.||.|| ||| ||.||.|.|||..|.||..|..|.||||
BPUM_2521___p 1042 AACGGTCAAACAGTCCGTCAA-GCATCTAGAGATTTAGGGCTTCGCAGTG 1090
BSNT_04179___ 1091 ACTCAAGCGTAAGATTTGAAAAAGGAATTGATCCGGCGC-GCGTACG--- 1136
|.|||||||.|.||||||||||||||.|||||| ||| .||||||
BPUM_2521___p 1091 AATCAAGCGCACGATTTGAAAAAGGACTTGATC---CGCAACGTACGAAA 1137
BSNT_04179___ 1137 TCTTGCAGCAGAACGGGCTGCGCAGCTGATC--CATCTGTATGCCGGCGG 1184
|| .|||||.|||.|.||.|||||..||||| |||| |||||.||.||
BPUM_2521___p 1138 TC-AGCAGCCGAAAGAGCAGCGCAATTGATCAGCATC--TATGCAGGTGG 1184
BSNT_04179___ 1185 TGAGGTGCTTGCAGGAACAGTTGAGGAAGATCACCTGACAATCGAAGCAA 1234
|||.|||.|....||.||.||.||||||.|.|||| |.|||.|||
BPUM_2521___p 1185 TGAAGTGTTAAGTGGGACTGTGGAGGAAAACCACC------TTGAAACAA 1228
BSNT_04179___ 1235 ATA------ACATTCACGTATCTGCTGACAAAGTGAGCAGCGTTCTAGGC 1278
||| .|||.||||||||..||||....||||.||..||.||.|||
BPUM_2521___p 1229 ATATGAATGTCATCCACGTATCCACTGAGCGTGTGAACAAGGTGCTTGGC 1278
BSNT_04179___ 1279 CTGACGA--TCAGTAAAGAAGAACTGA-TCAGCATTT---ATAAACGTCT 1322
.|||..| ||| ||||||||..||| ||| .|||| |.||| ||
BPUM_2521___p 1279 ATGAGCATTTCA--AAAGAAGATATGATTCA-AATTTTCAACAAA---CT 1322
BSNT_04179___ 1323 CGGTTTTACGGTCGGTGAAGCGGGTGAACTTCTCGTTGTGACTGTCCCAT 1372
.||.|||||.||.||.|||.|...|||..|.||.|||||.||.||.||.|
BPUM_2521___p 1323 GGGCTTTACAGTGGGCGAATCAAATGACGTACTTGTTGTAACGGTTCCTT 1372
BSNT_04179___ 1373 CACGCCGCGGCGACATTACAATAGAAGAGGATTTAATCGAAGAAGCGGCA 1422
|.|||.|....||.||.|||||.|||||.|||.|.||.|||||||..||.
BPUM_2521___p 1373 CTCGCAGAATGGATATCACAATTGAAGAAGATCTCATTGAAGAAGTTGCG 1422
BSNT_04179___ 1423 AGACTGTACGGCTACGATAACATTCCGTCTACGCTTCCTGAGACAGCGGG 1472
|||.|.||||||||||||||.||.||.|||||.||.||||.||||||.||
BPUM_2521___p 1423 AGATTATACGGCTACGATAATATCCCATCTACACTACCTGCGACAGCTGG 1472
BSNT_04179___ 1473 AACTACA---GGCGGATTAACGCCATACCAGGCAAAACGCCGTAAAGTCA 1519
|||| ||.||..|.|||||||||||.|..||.||..|.||.||.|
BPUM_2521___p 1473 ---TACAGTTGGAGGTCTCACGCCATACCAAGTGAAGCGTAGAAAGGTGA 1519
BSNT_04179___ 1520 GACGCTTCCTTGAAGGCGCAGG-CTTATCACAAGCCATCACTTACTCACT 1568
||||.|||.|.||||||||||| ||| ||.|||.|.|||||.||.|||.|
BPUM_2521___p 1520 GACGTTTCTTAGAAGGCGCAGGTCTT-TCTCAATCGATCACGTATTCATT 1568
BSNT_04179___ 1569 GACAAACGAGAAGAAAGCGGCAGCGTTTGCGATTGAAAAGTCA--TT--- 1613
||||||..||.|.|||.|..|.||.||||| |||| ||.||| ||
BPUM_2521___p 1569 GACAAATCAGCATAAATCTACTGCCTTTGC-ATTG--AATTCAGCTTATA 1615
BSNT_04179___ 1614 ---GAATACTGTGCTTGCGCTTCCAATGAGTGAAGAAAGAAGCATTCTCA 1660
.||.|||.|.|||| |||||||||||.|||.||||..|.||.|
BPUM_2521___p 1616 AAACAAGACTTTCCTTG-----CCAATGAGTGAGGAACGAAGTGTGCTTA 1660
BSNT_04179___ 1661 GACACAGTCTTGTTCCGAATCTGCTTGATTCTGTTTCTTACAACCTCGCG 1710
||||.|||||..|.||.||..|.||||||||.|||.|.||.|||.|.||.
BPUM_2521___p 1661 GACAAAGTCTGCTGCCAAACTTACTTGATTCAGTTGCCTATAACTTGGCT 1710
BSNT_04179___ 1711 AGGCAGACTGACTCAGTTGCACTGTACGAAGTCGGCTCCGTTTTCCT-GA 1759
||.||..||||.|||.|||...|.||.|||...||.||.||.|||.| |.
BPUM_2521___p 1711 AGACAAGCTGATTCATTTGGCTTTTATGAAACGGGTTCTGTGTTCTTAGC 1760
BSNT_04179___ 1760 CGAAG--GAAGAGGACACAAAACCTGTTGAAACAGAACGCGTAGCAGGAG 1807
.|||| ||||.|| |||||||.||.||||.|||||..||.||.||.|
BPUM_2521___p 1761 AGAAGCTGAAGGGG---CAAAACCAGTGGAAAAAGAACATGTCGCTGGGG 1807
BSNT_04179___ 1808 CTGTTACCGGATTATGGCGCAAGCAGCTATGGCAGGGTGAAAAGAAACCA 1857
|..|.||.||.|||||||..||..|.||.||||||||.||.||.|||.|.
BPUM_2521___p 1808 CGCTGACAGGCTTATGGCATAAAAATCTTTGGCAGGGCGAGAAAAAAGCT 1857
BSNT_04179___ 1858 GTTGATTTCTTTGTTGTCAAAGGAATTGTAGAAGGGCTGTTAGACAAAC- 1906
||.|||||.|.|||.|..||||||||||.||||||.||.||.||.||.|
BPUM_2521___p 1858 GTCGATTTTTATGTAGCGAAAGGAATTGCAGAAGGTCTATTTGAAAAGCT 1907
BSNT_04179___ 1907 -------TCAACGTCCTAGACAGCATTGAATTTGTACAGTCTGAACGCAA 1949
||| |.||.| ||...||.|||.||..|.||.||..|
BPUM_2521___p 1908 TGGTGTATCA--GGCCAA------ATCACATATGTTCAAGCAGAGCGTGA 1949
BSNT_04179___ 1950 ACAGCTGCATCCGGGCAGAACAGC----GAACATTTTATTG--------A 1987
|...||.||.||.||..|.||||| |..|||||.|.|| |
BPUM_2521___p 1950 AGGTCTTCACCCAGGACGTACAGCAGATGTTCATTTAAATGGAAAAGTCA 1999
BSNT_04179___ 1988 ATGG--TTCTCTGATCGGCTTCATCGGCCAAGTCCACCCTTCATTGGAAA 2035
.||| ||.| ||.|..||||||| |.|||| .|.||||
BPUM_2521___p 2000 TTGGGTTTGT-TGCTGCGCTTCAT----CCAGTC---------GTTGAAA 2035
BSNT_04179___ 2036 AAGAACTGGATATAAAGGAAACATACGTATTTGAGCTCGATCTT----CA 2081
|.|||.|.|||.||||.||||||||.||.||.|||.|.||| || .|
BPUM_2521___p 2036 AGGAATTAGATTTAAAAGAAACATATGTCTTCGAGTTTGAT-TTAACAGA 2084
BSNT_04179___ 2082 TGCGTTGCTCGCGGCAGAAACAGCACCGCT-TG---TTTACACGGCGATT 2127
|| ||.|..||.|.|||.| ||..|.| || |.|||| ||.|||
BPUM_2521___p 2085 TG---TGATGACGTCTGAATC--CAAGGATATGAAATATACA--GCAATT 2127
BSNT_04179___ 2128 CCGAAATATCCGT-CTGTGACACGTGATATTGCTCTTGT-----AACAG- 2170
||||.|| |||.| ||||||||.|.||||||||.||||| |.|||
BPUM_2521___p 2128 CCGAGAT-TCCCTGCTGTGACAAGAGATATTGCACTTGTCGTAGATCAGC 2176
BSNT_04179___ 2171 ATAAAACCGTCACAAGCGGACAGCTCGAG-AGCGTCATTAAAGAGGCTGG 2219
||| ||.|||||||||||||.||| || |||||....||.||.||
BPUM_2521___p 2177 ATA------TCTCAAGCGGACAGCTGGAGCAG-GTCATCTTTGAAGCAGG 2219
BSNT_04179___ 2220 CGGCAAGCTTCTGAAAGAGGTAACCGTCTTTGACGTATACGAAGGCGAAC 2269
|||.||..|.||||..||..||.||||||||||.||.||.|||||.||||
BPUM_2521___p 2220 CGGGAATTTACTGACTGATCTATCCGTCTTTGATGTGTATGAAGGTGAAC 2269
BSNT_04179___ 2270 ATATGGAGGAAGGCAAGAAGTCAGTCGCTTTCTCACTCCAGTATGTCAAC 2319
|.|||||.||||||||.|||||.||.||.|||||.|||||.|||.|.||.
BPUM_2521___p 2270 ACATGGAAGAAGGCAAAAAGTCTGTTGCATTCTCTCTCCAATATTTAAAT 2319
BSNT_04179___ 2320 CCTGAACAAACACTGACTGAAGAAGAAGTGACAAAGGCGC-------ACA 2362
||.|||||||||.||||.||.|||||||| ||| ||| |||
BPUM_2521___p 2320 CCGGAACAAACATTGACAGAGGAAGAAGT--CAA---CGCTGTTCATACA 2364
BSNT_04179___ 2363 GCAAAGTGCTGAAAGCGTTAGAAGACACATATCAAGCTGTTTTAAGAGGC 2412
|||||..|||||||.||||||||.||.||||||||.||.||..|.||.
BPUM_2521___p 2365 --AAAGTATTGAAAGCATTAGAAGATACGTATCAAGCCGTCTTGCGCGGT 2412
BSNT_04179___ 2413 TGA 2415
|.|
BPUM_2521___p 2413 TAA 2415
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