Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04174 and BPUM_2519
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:42
# Commandline: needle
# -asequence dna-align/BSNT_04174___yshA.1.24716.seq
# -bsequence dna-align/BPUM_2519___yshA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04174___yshA-BPUM_2519___yshA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04174___yshA-BPUM_2519___yshA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04174___yshA
# 2: BPUM_2519___yshA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 260
# Identity: 209/260 (80.4%)
# Similarity: 209/260 (80.4%)
# Gaps: 4/260 ( 1.5%)
# Score: 826.5
#
#
#=======================================
BSNT_04174___ 1 TTGTCTGACGGCAAAAAAACAAAAACAACCGTTGACATTTACGGCCAGCA 50
||||||||||||...|||||.||||||||.|||||.||||||||.|||..
BPUM_2519___y 1 TTGTCTGACGGCGGTAAAACGAAAACAACAGTTGAGATTTACGGACAGTC 50
BSNT_04174___ 51 CTTCACGATTGTCGGTGAAGAAA-GCAGA-GCCCATATGAGGTATGTCGC 98
||..|||||..|||||.|||||| |.||| | ||||||.|..|.||.||
BPUM_2519___y 51 CTATACGATCATCGGTCAAGAAACGAAGATG--CATATGCGACACGTTGC 98
BSNT_04174___ 99 CGGAATTGTTGATGATAAAATGAGAGAAATCAATGAAAAAAATCCATACC 148
...|||||||||||||||||||||||||||.|||||||||||.|||||||
BPUM_2519___y 99 TTCAATTGTTGATGATAAAATGAGAGAAATAAATGAAAAAAACCCATACC 148
BSNT_04174___ 149 TTGATATAAATAAACTTGCAGTGCTGACAGCGGTAAATGTGGTGCACGAT 198
||||||||||.|||.|.||.||.||||||||.||.|||||.||.|||||.
BPUM_2519___y 149 TTGATATAAACAAATTAGCTGTACTGACAGCAGTCAATGTCGTCCACGAC 198
BSNT_04174___ 199 TATGTCAAATTACAAGAGAAATGTGAAAAACTGGAGCGGCAGCTTAAAGA 248
||..|.||||||.|||||.|||..||||||||.|||...|||||||||||
BPUM_2519___y 199 TACTTGAAATTAAAAGAGCAATACGAAAAACTAGAGATTCAGCTTAAAGA 248
BSNT_04174___ 249 AAAGGATTGA 258
||||||.|||
BPUM_2519___y 249 AAAGGAATGA 258
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