Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04167 and BPUM_2512

See Amino acid alignment / Visit BSNT_04167 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:41
# Commandline: needle
#    -asequence dna-align/BSNT_04167___ysiA.1.24716.seq
#    -bsequence dna-align/BPUM_2512___ysiA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04167___ysiA-BPUM_2512___ysiA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04167___ysiA-BPUM_2512___ysiA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04167___ysiA
# 2: BPUM_2512___ysiA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 602
# Identity:     434/602 (72.1%)
# Similarity:   434/602 (72.1%)
# Gaps:          34/602 ( 5.6%)
# Score: 1533.5
# 
#
#=======================================

BSNT_04167___      1 TTGAAGCAAAAACGGCCAAAGTATATGCAGATTATTGATGCAGCAGTAGA     50
                     ||||||||.|||.|.||.|||||.|||||.|||||||||||||||||.|.
BPUM_2512___y      1 TTGAAGCAGAAAAGACCGAAGTACATGCAAATTATTGATGCAGCAGTTGT     50

BSNT_04167___     51 AGTCATTGCAGAAAACGGCTACCACCAGTCACAGGTATCCAAAATTGCCA    100
                     .||.||||||||.||.|||||.|||||.|||||.||.||.||||||||.|
BPUM_2512___y     51 GGTGATTGCAGAGAATGGCTATCACCAATCACAAGTTTCAAAAATTGCGA    100

BSNT_04167___    101 AACAAGCTGGGGTAGCGGACGGCACCATCTATCTCTATTTTAAAAACAAA    150
                     |||||||.||||||||.|||||.|||||.|||||.|||||||||||.|||
BPUM_2512___y    101 AACAAGCAGGGGTAGCAGACGGAACCATTTATCTTTATTTTAAAAATAAA    150

BSNT_04167___    151 GAAGATATTTTAATTTCTCTT-TTCAAAGAAAAAATGGGTCAATTTATTG    199
                     ||.||||||||.||.|| ||| |||||||||||||||||.|||||.||.|
BPUM_2512___y    151 GAGGATATTTTGATCTC-CTTATTCAAAGAAAAAATGGGACAATTCATCG    199

BSNT_04167___    200 AGCGGATGGAAGAGGACATTAAAGAAAAAGCAACAGCGAAAGAGAAATTG    249
                     |.|||||||||...||.|||.||.|.|||.|..|.||||||||.||    
BPUM_2512___y    200 AACGGATGGAAACAGATATTCAAAAGAAACCGTCTGCGAAAGAAAA----    245

BSNT_04167___    250 GCGCTT------GTGATTTCAAAGCATTTTTCCCTTT--TAGCGGGTGAC    291
                       ||||      .|.|||..|.||||||||  |.|.|  |.|||....|.
BPUM_2512___y    246 --GCTTCTACTGCTCATTGAAGAGCATTTT--CGTATGCTTGCGCAAAAT    291

BSNT_04167___    292 CATAATCTCGCAATTGTCACGCAGCTTGAGCTCCGCCAATCCAACTTGGA    341
                     |||.||.|.||..||||.||.||||||||.|||.|.||.||.|||.|.||
BPUM_2512___y    292 CATCATTTGGCTCTTGTGACACAGCTTGAACTCAGGCAGTCAAACCTTGA    341

BSNT_04167___    342 GCTGCGCCAAAAAATCAACGAAATATTAAAAGGCTACTTAAATATTTTGG    391
                     ||||||.|||||||||||.||..|..|.|||||.||.||||||||..|.|
BPUM_2512___y    342 GCTGCGGCAAAAAATCAATGAGGTGCTGAAAGGGTATTTAAATATGCTCG    391

BSNT_04167___    392 ATGGCATTTT----GACGGAAGGCATACAATCAGGCGAATTAAAAGAAGG    437
                     |...||||||    ||.||||.|    .||.||||.|||||.|.|.||..
BPUM_2512___y    392 AATCCATTTTAGCAGATGGAAAG----AAAACAGGAGAATTTAGACAAAA    437

BSNT_04167___    438 CCTCGACGTCCGCCTCGCCCGGCAGATGATTTTTGGAACGATTGACGAAA    487
                     .||.||.|||||..|.||..|.||.|||.|.|||||.||||||||.||||
BPUM_2512___y    438 TCTAGATGTCCGTTTAGCGAGACAAATGGTATTTGGGACGATTGATGAAA    487

BSNT_04167___    488 CCGTGACAACATGGGTGATGAATGACCAAAAGTACGATCTTGCTGCGCTT    537
                     |||..|||||||||||.||||||||.|||||.||.||||||.||||.|||
BPUM_2512___y    488 CCGCTACAACATGGGTCATGAATGATCAAAAATATGATCTTCCTGCACTT    537

BSNT_04167___    538 TCAGACAGCGTTTTAGAATTATTGGTGTCCGGAATTCATAA----TAAGT    583
                     .||||.|.|||....||..||.|..|...||||||.|||.|    |||  
BPUM_2512___y    538 GCAGAAAACGTACGTGATCTACTCTTAAACGGAATACATCAATCTTAA--    585

BSNT_04167___    584 AA    585
                       
BPUM_2512___y    585 --    585


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