Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04166 and BPUM_2511

See Amino acid alignment / Visit BSNT_04166 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:41
# Commandline: needle
#    -asequence dna-align/BSNT_04166___ysiB.1.24716.seq
#    -bsequence dna-align/BPUM_2511___ysiB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04166___ysiB-BPUM_2511___ysiB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04166___ysiB-BPUM_2511___ysiB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04166___ysiB
# 2: BPUM_2511___ysiB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 818
# Identity:     544/818 (66.5%)
# Similarity:   544/818 (66.5%)
# Gaps:          79/818 ( 9.7%)
# Score: 1634.5
# 
#
#=======================================

BSNT_04166___      1 AT-GAATGCAATATCACTGGCAGTTGATCAATTTGTG-----------GC     38
                     || |||   ||.|| |||..|..|..||||     ||           ||
BPUM_2511___y      1 ATGGAA---AAGAT-ACTCACCTTACATCA-----TGAAGGACAGACAGC     41

BSNT_04166___     39 AGTTTTGACGATTCACAATCCGCCGGCAAATGCGCT----TTC-CAGCCG     83
                     |.||.|.||||||||..||||.||.|||||.|| ||    ||| ||||.|
BPUM_2511___y     42 ACTTATCACGATTCAGCATCCACCAGCAAACGC-CTTATCTTCTCAGCTG     90

BSNT_04166___     84 GATATTAGAAGAGCTGTCT-TCCTGTCTTGATCAATGTGAGAC-AGATGC    131
                        .|||| .||||||..| .|.||| ||||.||....|| || |.|||.
BPUM_2511___y     91 ---CTTAG-CGAGCTGAATGACATGT-TTGACCAGCTCGA-ACAAAATGA    134

BSNT_04166___    132 AGGCGTACGAAGCATTATCATTCACGGCGAGGGAAGATTTTTCTCAGCCG    181
                     ||..|||.||..||||.|.||||||||.||.|||||||||||||||||.|
BPUM_2511___y    135 AGAAGTAAGAGCCATTGTGATTCACGGGGAAGGAAGATTTTTCTCAGCAG    184

BSNT_04166___    182 GCGCTGATATTAAAGAATTTACATCGCTTAAAGGCAATGAG---GATTCC    228
                     |.|||||||||||.||||||||..| |||..|||  |.|||   ||.|..
BPUM_2511___y    185 GTGCTGATATTAAGGAATTTACGAC-CTTGCAGG--AAGAGTCTGACTAT    231

BSNT_04166___    229 TCATTGCTCGCTGAGCGCGGCCAGCAGTTAATGGAGAGAATCGAAAGCTT    278
                     |||...||.||.||..|.||.||||||.|..|.||..|.||.|||...|.
BPUM_2511___y    232 TCAAGCCTTGCAGACAGAGGACAGCAGGTCTTTGAACGGATTGAACAATG    281

BSNT_04166___    279 TCCAAAACCGATTATCGCAGCGATTCACGGCGCTGCTCTCGGAGGCGGGC    328
                     |||.||||||.|.||.||..|.||||||||.|||||..|.||.||.||.|
BPUM_2511___y    282 TCCGAAACCGGTCATTGCTTCAATTCACGGAGCTGCATTAGGCGGGGGCC    331

BSNT_04166___    329 TGGAGCTTGCGATGGCCTGTCATATCAGAATTGCAACAGTAGATGCTAAG    378
                     |.||||||||.|||.|.|||.||||..||||.||||||..||||||.|||
BPUM_2511___y    332 TTGAGCTTGCCATGTCTTGTGATATACGAATCGCAACAAAAGATGCGAAG    381

BSNT_04166___    379 CTGGGGCTCCCGGAGCTTAATCTCGGTATCATTCCGGGTTTTGCGGGGAC    428
                     ||.||.||.||.||.||.||.||||||||||||||.||.||.|..||.||
BPUM_2511___y    382 CTTGGACTGCCAGAACTAAACCTCGGTATCATTCCAGGATTCGGCGGTAC    431

BSNT_04166___    429 ACAGCGCCTTCCGAGATATGTCGGCACAGCCAAAGCATTAGAGCTCATCG    478
                     .||||||||.|||.|.|||||.||..|.||.|||||..||||..|.||.|
BPUM_2511___y    432 GCAGCGCCTACCGCGCTATGTTGGTTCTGCAAAAGCGCTAGAAATGATGG    481

BSNT_04166___    479 GATCAGGAGAACCGATATCCGGAAAAGAAGC----GCTTGATCTCGGACT    524
                     |..|||..||||||||..|.|||.|||||||    |||||    ||||||
BPUM_2511___y    482 GTACAGCTGAACCGATTACAGGAGAAGAAGCATTTGCTTG----CGGACT    527

BSNT_04166___    525 TGTCTCAATTGGAGC-----GAAAGATGAGGCAGAAGTGATTGAAAAAGC    569
                     |||.||||    |||     ||||.| ||||.|||.|.|.|.|||..|||
BPUM_2511___y    528 TGTGTCAA----AGCTGGCAGAAACA-GAGGAAGAGGCGCTCGAAGCAGC    572

BSNT_04166___    570 AAAAGCACTTGCCGCTAAGTTTGCAGAGAAAAGCCCGCAAACGCTGGCAT    619
                     .|||.|||||||..|.||.||||||..||||||.||..||.|.||.|.||
BPUM_2511___y    573 CAAAACACTTGCGTCAAAATTTGCAACGAAAAGTCCAAAATCACTCGAAT    622

BSNT_04166___    620 CTTTGCTTGAACTTCTCTATT-----CCAACAAGGTGTATTCCTATGAAG    664
                     .|.||||.||     |.||||     |.|..||..|||||||.|||||.|
BPUM_2511___y    623 ATGTGCTGGA-----TTTATTGAATGCGACAAAATTGTATTCATATGACG    667

BSNT_04166___    665 GCAGCTTAAAGCTTGAAGC---AAAGCGATTTGGGGAAGCATTT--GAGT    709
                     ||.|..|.|||||.|||||   ||||   ||.||.||  .||||  .|.|
BPUM_2511___y    668 GCGGTATGAAGCTAGAAGCCAAAAAG---TTCGGTGA--GATTTTCCAAT    712

BSNT_04166___    710 CAGAGGACGCCAAGGAAGGCATCCAGGCATTTCTCGAAAAAAGAAAGCCT    759
                     |..|.||.|||||.|||||.||.||.||.|||.|||||||..|.||.||.
BPUM_2511___y    713 CGAATGATGCCAAAGAAGGTATTCAAGCCTTTATCGAAAAGCGCAAACCA    762

BSNT_04166___    760 CAGTTCAAAGGCGAATAA    777
                     .|.||.|||||.||||||
BPUM_2511___y    763 AATTTTAAAGGGGAATAA    780


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04166 and BPUM_2511

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
