Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04160 and BPUM_2508
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:40
# Commandline: needle
# -asequence dna-align/BSNT_04160___xsa.1.24716.seq
# -bsequence dna-align/BPUM_2508___abfA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04160___xsa-BPUM_2508___abfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04160___xsa-BPUM_2508___abfA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04160___xsa
# 2: BPUM_2508___abfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1598
# Identity: 1034/1598 (64.7%)
# Similarity: 1034/1598 (64.7%)
# Gaps: 208/1598 (13.0%)
# Score: 3161.0
#
#
#=======================================
BSNT_04160___ 1 ATGAAAGGAATGATCAGAGGCATGTCTGAACATCAA-GCAGTGATTCAAA 49
.||||.||.| ||| |.||..|||| |..|||||
BPUM_2508___a 1 GTGAAGGGGA----CAG---------TAAAAGTCAATGACGTGAT----- 32
BSNT_04160___ 50 CAGATATCGTAAAAGGAACCATTAACAAAAATATATACGGTCATTTTGCT 99
|.|| ||| |||...|||.|.||.||.||.||||||...
BPUM_2508___a 33 CGGA---CGT----------ATTTCTAAACACATCTATGGACATTTTCAA 69
BSNT_04160___ 100 GAGCATTTAGGAAGAGGGATTTATGAGGGGATCTGGGTCGGAACGGACTC 149
||||||||||||||||||||||||||.|||||.||||||||||..||.||
BPUM_2508___a 70 GAGCATTTAGGAAGAGGGATTTATGACGGGATTTGGGTCGGAAAAGATTC 119
BSNT_04160___ 150 AGACATCCCCAATATCAACGGGATACGAAAGGACGTGCTGGAGGCGC-TC 198
|||.|||....||||..|.|||||.||.|.|||.|||||..|.||.| ||
BPUM_2508___a 120 AGAGATCGATCATATTGAGGGGATTCGTACGGATGTGCTTAAAGCCCTTC 169
BSNT_04160___ 199 AAACAGCTGCACATCCCTGTCCTCAGGTGGCCGGGCGGGTGTTTTGCGGA 248
||.|| .|.||.||.||.||.||.||||||||||||||.||.|||||.||
BPUM_2508___a 170 AAGCA-TTACATATTCCGGTGCTTAGGTGGCCGGGCGGCTGCTTTGCAGA 218
BSNT_04160___ 249 CGAATACCATTGGGCAAACGGTGTCG---------GTGACCGTAAGACAA 289
|||.||.|||||||||||.|||||.| |.||.||.|||.|||
BPUM_2508___a 219 CGAGTATCATTGGGCAAATGGTGTAGGAGATCTGAGCGAACGAAAGCCAA 268
BSNT_04160___ 290 TGCTGAACACTCACTGGGGCGGTACAATTGAATCAAATGAATTCGGAACG 339
||.||||||||||.|||||.||.||..|||||||.||||||||.||.||.
BPUM_2508___a 269 TGGTGAACACTCATTGGGGTGGCACGGTTGAATCCAATGAATTTGGTACA 318
BSNT_04160___ 340 CATGAATTTATGATGCTTTGCGAGCTGCTTGAATGCGAGCCATATATTTG 389
|||||.|||||||...|.||.|||||.||||||||||||||.||||||||
BPUM_2508___a 319 CATGAGTTTATGAAATTGTGTGAGCTACTTGAATGCGAGCCTTATATTTG 368
BSNT_04160___ 390 CGGCAATGTCGGAAGCGGAACCGTTCAGGAAATGGCGGAGTGGATTGAAT 439
|||.|||||.|||||.||.||.|||||.|||.|.||.||.|||.||||.|
BPUM_2508___a 369 CGGAAATGTGGGAAGTGGGACTGTTCAAGAATTAGCAGACTGGGTTGAGT 418
BSNT_04160___ 440 ATATGACATTTGAAGAAGGCACGCCGATGTCAGACTGGAGAAAGCAAAAT 489
|.||.||.|||..|.|.||.|||||.|||||.||.|||.|.|..||||||
BPUM_2508___a 419 ACATCACCTTTCCAAAGGGAACGCCTATGTCTGATTGGCGCATTCAAAAT 468
BSNT_04160___ 490 GGAAGAGAAGAGCCTTGGAAGCTGAAATATTTCGGCGTGGGCAATGAAAA 539
||||.|.|.|||||||||.|..|||..|||.|.||.||.||.||.||||.
BPUM_2508___a 469 GGAAAACATGAGCCTTGGGATTTGACCTATGTTGGTGTAGGAAACGAAAG 518
BSNT_04160___ 540 CTGGGGCTGCGGCGGCAACATGCATCCCGAATACTACGCAGATCTGTACC 589
|||||||||||||||.||.|||...||.||||||||.||.|||.|.||..
BPUM_2508___a 519 CTGGGGCTGCGGCGGGAATATGACGCCTGAATACTATGCCGATTTATATA 568
BSNT_04160___ 590 GGCGTTTTCAGACTTATGTCCG-CAATTACAGTGGG--AATGACATTTAT 636
..||.|.|||.||.|||||..| .|||| .||.|| ||| .|||.||.
BPUM_2508___a 569 AACGATATCAAACGTATGTGAGAGAATT--TGTAGGTCAAT-CCATATAC 615
BSNT_04160___ 637 AAAATTGCAGGCGGAGCAAATGTGGATGATTTTAATTGGACGGACGTGCT 686
||||||||..|||||||.|||....|||||.|.||||||||..|.||..|
BPUM_2508___a 616 AAAATTGCGTGCGGAGCCAATTCAAATGATGTGAATTGGACAAAAGTATT 665
BSNT_04160___ 687 TATGAAAAAAGCCGCTGGCCT--GATGGACGGGTTGAGTCTTCATTATTA 734
.|||.|....||||| .||| ||||||.||..|.|||.|.|||||.||
BPUM_2508___a 666 AATGGAGCGCGCCGC--ACCTTGGATGGATGGACTCAGTTTGCATTACTA 713
BSNT_04160___ 735 CACGAT------TCCGGGGGATTTCTGGAACGGCAAAGGATCAGCCACAG 778
|||..| |.||.|||| ||| .|||||.|||||.||.|
BPUM_2508___a 714 CACTGTACCTGGTACGTGGGA------GAA---GAAAGGGTCAGCGACTG 754
BSNT_04160___ 779 AATTCACGGAAGATGAGTGGTTTATTACGATGAAAAAAGCCAAATACATC 828
||||....||||||||.||||||||.|||.|||||||||||.|..|.||.
BPUM_2508___a 755 AATTTGATGAAGATGAATGGTTTATCACGTTGAAAAAAGCCTATGAGATG 804
BSNT_04160___ 829 GA------TGAATT-GATTCAAAAACACGGCACGATTATGGACCGGTACG 871
|| ||..|| ||| ||.||...|||.|||||.|||||.|
BPUM_2508___a 805 GAACGGCTTGTCTTGGAT-------CATGGAGAGATCATGGATCGGTATG 847
BSNT_04160___ 872 ATCCGGAGCAGCGGGTCGGGCTGATTATTGATGAATGGGGCACTTGGTTT 921
|.||.||..||.|..|||||.||||.||||||||||||||.||.||||.|
BPUM_2508___a 848 ACCCAGACAAGAGAATCGGGATGATCATTGATGAATGGGGGACATGGTAT 897
BSNT_04160___ 922 GATCCCGAGCCAGGCACGAATCCCGGTTTCTTATATCAGCAAAACACCAT 971
|||||.||.|||||.||.|||||.||.||.||.||||||||||||||..|
BPUM_2508___a 898 GATCCAGAACCAGGAACAAATCCAGGGTTTTTGTATCAGCAAAACACGCT 947
BSNT_04160___ 972 TCGTGATGCAC-TGGTGGCGGCTTCTCATTTCCACATTTTCCATCAGCAT 1020
..|.||.|||| ||.|.|.|.|.| ||||||.||.||.||.||||..|||
BPUM_2508___a 948 AAGAGACGCACTTGTTTGTGCCCT-TCATTTTCATATCTTTCATCGTCAT 996
BSNT_04160___ 1021 TGCCGCCGGGTGCAAATGGCCAACATCGCCCAAACAGTAAACGTTCTGCA 1070
||||..||..|.||.|||||.||.||.||.||.||.||.||.|||||.||
BPUM_2508___a 997 TGCCAGCGAATTCATATGGCGAATATTGCTCAGACGGTCAATGTTCTTCA 1046
BSNT_04160___ 1071 AGCGATGATTTTGACTGAGGGCGAGCGGATGCTTTTGACACCGACGTACC 1120
|||.|||.|.||.||.||.|.|||....||||||.||||.||||||||.|
BPUM_2508___a 1047 AGCAATGGTGTTAACGGAAGACGAAAAAATGCTTCTGACCCCGACGTATC 1096
BSNT_04160___ 1121 ATGTATTCAATATGTTTAAGGTGCACCA---GGACGCTTCTCTTTTAG-- 1165
||||.||..|.||||||.|.|||||.|| |||.|...|.|||..||
BPUM_2508___a 1097 ATGTGTTTCACATGTTTCAAGTGCATCAAGTGGAGGAAGCACTTGAAGTG 1146
BSNT_04160___ 1166 -----CAACAGAGACAATGTCTGCCGACTATGAATGGAAG-GGTGAAACG 1209
| |.|.|||.|.|| |||||| .|||| |||||||..
BPUM_2508___a 1147 GATTTC----GTGTCAACGCCT------TATGAA-CGAAGCGGTGAAAAA 1185
BSNT_04160___ 1210 CTTCCGCAAATCAGCATTTCAGCGTCGAAACAAGCTGAAGGT--GATGTC 1257
.|.||.|||.|.||..|.|||||.||| .||| .|| |||
BPUM_2508___a 1186 ATACCTCAAGTTAGTGTGTCAGCTTCG-----CGCT---CGTCAGAT--- 1224
BSNT_04160___ 1258 AATAT-CACTATTTGCAACATCGATCACC--AA--------AACAAAGCG 1296
||.|| || |||| |.|.||..||||| || ||||||.||
BPUM_2508___a 1225 AAGATGCA-TATT---AGCTTCTGTCACCTGAATCCGCATGAACAAAACG 1270
BSNT_04160___ 1297 GAG--------GCGGAAATCGA--GCTGAGAGGCCTACAC--AAGGCAGC 1334
.|| || .||.|| |.|..||.||..|.|| |||.|| |
BPUM_2508___a 1271 AAGTATCCCTTGC---CATTGAAGGTTTGGATGCACAAACGAAAGTCA-C 1316
BSNT_04160___ 1335 GGACCATCCCGGAGTCATTCTTACGGCAGAAAAAATGAATGCGCATAACA 1384
||.|| .|.|.||.||.||.||....|||||||||||.||.|
BPUM_2508___a 1317 GGGCC---------GCGTGCTGACAGCGGATCGCATGAATGCGCACAATA 1357
BSNT_04160___ 1385 CGTTTGACGATCCTCATCATGTCAAACCGGAATCCTTCAGACAATACACG 1434
|.|||||.|||||.|||..|||| |||.||.||.|..
BPUM_2508___a 1358 CATTTGATGATCCCCATGCTGTC--------------CAGCCAGTAGAGT 1393
BSNT_04160___ 1435 CTCAGCAA--------AAACAAAC--------TGAAAGTAAAACTCCCGC 1468
.||||||| || ||.| |||...||.|.||.||||
BPUM_2508___a 1394 TTCAGCAATTTGCTGTAA--AATCCGGTGAGTTGACCATAGATCTGCCGC 1441
BSNT_04160___ 1469 CAATGTCAGTCGTCTTACTTACG------CTGCGTGCTT-ATTCTTAA 1509
|||||||.||.||..|..|.||| ||| |||| |
BPUM_2508___a 1442 CAATGTCTGTGGTGATGATCACGATCGATCTG---GCTTGA------- 1479
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