Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_04143 and BPUM_2494

See Amino acid alignment / Visit BSNT_04143 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:39
# Commandline: needle
#    -asequence dna-align/BSNT_04143___ysmB.1.24716.seq
#    -bsequence dna-align/BPUM_2494___ysmB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04143___ysmB-BPUM_2494___ysmB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04143___ysmB-BPUM_2494___ysmB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04143___ysmB
# 2: BPUM_2494___ysmB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 463
# Identity:     332/463 (71.7%)
# Similarity:   332/463 (71.7%)
# Gaps:          44/463 ( 9.5%)
# Score: 1169.0
# 
#
#=======================================

BSNT_04143___      1 ATGACATCAAAAC------CTTTGGAGCATGTTGCGGATATTGAAAAGTC     44
                          ||..||||      .|.||| .|||||.||.||.||||||||.||
BPUM_2494___y      1 -----ATGGAAACGAATGAGTCTGG-CCATGTAGCAGAGATTGAAAAATC     44

BSNT_04143___     45 ACTCCGCCACATTGCCGCGATCATTAAGCAAAAAGGACGAGAAATCCTTA     94
                     |.|.|||||.|||||.||.||.||||||||||||||..||||||||||.|
BPUM_2494___y     45 ATTGCGCCATATTGCGGCAATTATTAAGCAAAAAGGCAGAGAAATCCTGA     94

BSNT_04143___     95 ACCAATATGCGATTACGCCGCCGCAATTTGT-CGGCTTGCAATGGCTTTA    143
                     |.||||||.|||||||.||.||.|||||||| .||||| ||.||||||||
BPUM_2494___y     95 ATCAATATACGATTACACCTCCTCAATTTGTAGGGCTT-CAGTGGCTTTA    143

BSNT_04143___    144 TGAATTAGGAGATATGACAATCGGTGAATTATCGGGCAAA--ATGTATCT    191
                     ||||||.||||||||||||||.|||||..||||  .||||  ||||||.|
BPUM_2494___y    144 TGAATTCGGAGATATGACAATAGGTGAGCTATC--ACAAAAGATGTATTT    191

BSNT_04143___    192 GGCATGCAGCACGACAACGGACTTAATCGACCGCATGCAAAAAAATGAGC    241
                     |||.|||||.||.||.||.||||||||.||.||.|||.||||||.|||.|
BPUM_2494___y    192 GGCTTGCAGTACAACCACCGACTTAATTGATCGAATGGAAAAAAGTGAAC    241

BSNT_04143___    242 TTGTGGAGCGGGTCAAGGACCCGGCGGACAGACGTGTTGTCCGGATACAT    291
                     ||||.||.||.||.||.||.||..|.|||.|.||.||.||.||.||.|||
BPUM_2494___y    242 TTGTCGAACGAGTAAAAGATCCTTCTGACCGCCGCGTGGTTCGCATTCAT    291

BSNT_04143___    292 CTGCTGCCTGAAGGAGAACGGATTATCCAAGAGGTCATTACAAAAAGACA    341
                     .|..||||||||||.||.|||||.||.|||||.||.|||...|||.|.||
BPUM_2494___y    292 TTATTGCCTGAAGGCGAGCGGATCATTCAAGAAGTGATTGTCAAACGCCA    341

BSNT_04143___    342 GGAATATCTGCGTGATATGTTCGAATCGTTTA----------CAGATGAA    381
                     .|||||    |||.|   ||  ||| |.|.||          ||||.|||
BPUM_2494___y    342 AGAATA----CGTCA---GT--GAA-CTTCTAGGGGCTTTCTCAGAAGAA    381

BSNT_04143___    382 GAAATAGCCATC---TTCGAAAAATCTTTGATGAAACTGCAGCATGAAAT    428
                     ||   |||||||   |||.|..||||.||.|.||||||.|||||..||||
BPUM_2494___y    382 GA---AGCCATCGTTTTCAATCAATCCTTAACGAAACTACAGCAGCAAAT    428

BSNT_04143___    429 GAAGAGAAAATGA    441
                     |||.|||||||||
BPUM_2494___y    429 GAAAAGAAAATGA    441


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.