Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04142 and BPUM_2493

See Amino acid alignment / Visit BSNT_04142 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:39
# Commandline: needle
#    -asequence dna-align/BSNT_04142___racE.1.24716.seq
#    -bsequence dna-align/BPUM_2493___racE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04142___racE-BPUM_2493___racE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04142___racE-BPUM_2493___racE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04142___racE
# 2: BPUM_2493___racE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 860
# Identity:     595/860 (69.2%)
# Similarity:   595/860 (69.2%)
# Gaps:          85/860 ( 9.9%)
# Score: 2012.5
# 
#
#=======================================

BSNT_04142___      1 ---TTGGAACAACCAATAGGAGTCATTGATTCCGGGGTTGGCGGTTTAAC     47
                        |||||.||||||||.||.||||||||||||||.||.|||||||||||
BPUM_2493___r      1 TTGTTGGATCAACCAATCGGCGTCATTGATTCCGGCGTCGGCGGTTTAAC     50

BSNT_04142___     48 CGTTGCGAAGGAAATCATGAGACAGCTACCTAAAGAAAATATTATCTACG     97
                     ||||||.|||||||||||||||||.|||||.||||||||.||.||.||||
BPUM_2493___r     51 CGTTGCAAAGGAAATCATGAGACAACTACCAAAAGAAAAAATCATTTACG    100

BSNT_04142___     98 TCGGGGATACGAAACGGTGTCCTTATGGACCGCGCCCTGAAGAAGAGGTG    147
                     |.||.|||||.||||||||.||.|||||.||.||....|||||||||||.
BPUM_2493___r    101 TAGGCGATACAAAACGGTGCCCGTATGGTCCTCGGAAAGAAGAAGAGGTT    150

BSNT_04142___    148 CTTCAATATACGTGGGA----GCTGACGAATTATTTACTCGAAAAC--CA    191
                     |||||||||||.|||||    ||..||.|.|||||      ||.||  ||
BPUM_2493___r    151 CTTCAATATACTTGGGAAATGGCACACTACTTATT------AAGACATCA    194

BSNT_04142___    192 CCACATCAAAATGCTCGTGATCGCCTGTAATACAGCAACAGCGATCGCTT    241
                     |||.||.|||||||||||.|||||.||.||.|||||.||.||||||||..
BPUM_2493___r    195 CCATATTAAAATGCTCGTCATCGCATGCAACACAGCGACGGCGATCGCAC    244

BSNT_04142___    242 TGGATGACATCCAGCGCAGC-GTCGGCATACCGGTGGTCGGAGTCATCCA    290
                     |.|||||.|| ||..|||.| .|||..||.|||||..|.||.||.||.||
BPUM_2493___r    245 TAGATGAAAT-CAAAGCAACACTCGATATTCCGGTCATTGGCGTGATTCA    293

BSNT_04142___    291 GCCTGGTGCGAGAGCAGCGATAAAAGTGACGGATAATCAGCATATCGGTG    340
                     |||||||||..|..||||.||.||.|||||..|.||||||||.||.||||
BPUM_2493___r    294 GCCTGGTGCTCGCACAGCCATCAAGGTGACAAACAATCAGCAGATTGGTG    343

BSNT_04142___    341 TCATCGGCACAGAGAATACGATTAAGAGCAATGCATACGAAGAAGCGCTT    390
                     ||||.||.||.|..||||||||.||.|||.|.||||||.|||||||   |
BPUM_2493___r    344 TCATTGGTACGGCCAATACGATCAAAAGCGAGGCATACAAAGAAGC---T    390

BSNT_04142___    391 TTGGCATTAAACCCT--------GATTTGAAGGTTGAAAACCTTGCCTGC    432
                     |||..||    ||||        ||.|.| .||||.|||..||.||.||.
BPUM_2493___r    391 TTGCTAT----CCCTAAAAGCAGGACTAG-CGGTTCAAAGTCTGGCATGT    435

BSNT_04142___    433 CCGCTGCTTGTGCCTTTTGTGGAAAGCGGGAAGTTTCTCGACAAAACAGC    482
                     |||||||||||.||.|||||||||||.||.|..|||.|.||..|.|||||
BPUM_2493___r    436 CCGCTGCTTGTCCCATTTGTGGAAAGTGGTACATTTTTAGATCAGACAGC    485

BSNT_04142___    483 AGACGAGATTGTTAAAACCTCGCTGTATCCGTTAAAAGACACATCAATTG    532
                     |||.||..|.||.|||...||.||..|.|||.|.|||||.|||..|||||
BPUM_2493___r    486 AGATGAAGTGGTGAAAGATTCCCTTGAACCGATGAAAGAAACAGGAATTG    535

BSNT_04142___    533 ATTCGCTGATTTTAGGCTGCACCCATTACCCTATTTTAAAAGAAGCCATT    582
                     ||.|.||.|||.|.||||||||.||.||.||.|||||||||||..|.|||
BPUM_2493___r    536 ATACACTCATTCTTGGCTGCACGCACTATCCGATTTTAAAAGAGTCAATT    585

BSNT_04142___    583 CAAAGATATATGGG-AGAGCACGTAAACATTATTTCGTCCGGCGATGAAA    631
                     ||..|.|.|||||| ||.| |.||.|.|||.|||||.||.||.|||||.|
BPUM_2493___r    586 CAGCGCTTTATGGGCAGTG-ATGTGAGCATCATTTCATCAGGAGATGAGA    634

BSNT_04142___    632 CAGCCCGGGAAGTCAGCACAATTCTCTCTTATAAAGGGCTGCTGAACCAG    681
                     ||||..|.||||..||.||||||||.||.||||||||.|||.|.|||...
BPUM_2493___r    635 CAGCTAGAGAAGCGAGTACAATTCTTTCCTATAAAGGACTGTTAAACACT    684

BSNT_04142___    682 TCTC-CGATTGCCCCGGATCAT-CAGTTCCTGACAACAGGGGCGCGTGAT    729
                     |||| .|| .||.||.|.|||| ||.||..| |||||||||      .|.
BPUM_2493___r    685 TCTCAAGA-AGCGCCTGTTCATACATTTTAT-ACAACAGGG------CAA    726

BSNT_04142___    730 CAG------TTTGCAAAAATCGCAGACGATTGGTTTGGCCAT--------    765
                     |||      ||||.|||.|||||....||.|||||||||.||        
BPUM_2493___r    727 CAGCAAAATTTTGAAAACATCGCTCGTGACTGGTTTGGCTATCTGCCAGG    776

BSNT_04142___    766 -GAAGTCG----GGCAT--GTGGA--ATGTATCTCACTGCAAGAACCGAT    806
                      .||||||    .|.||  .|.||  ||||.|.|||  ||||.||     
BPUM_2493___r    777 AAAAGTCGAAACCGTATCACTCGAACATGTCTATCA--GCAATAA-----    819

BSNT_04142___    807 TAAAAGATAG    816
                               
BPUM_2493___r    819 ----------    819


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04142 and BPUM_2493

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
