Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03532 and BPUM_2481
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:03
# Commandline: needle
# -asequence dna-align/BSNT_03532___yqjT.1.24716.seq
# -bsequence dna-align/BPUM_2481.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03532___yqjT-BPUM_2481.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03532___yqjT-BPUM_2481.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03532___yqjT
# 2: BPUM_2481
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 436
# Identity: 250/436 (57.3%)
# Similarity: 250/436 (57.3%)
# Gaps: 89/436 (20.4%)
# Score: 673.0
#
#
#=======================================
BSNT_03532___ 1 ---------------GTGCATCATATCGAACTGTATGTCTCTGATTTGGA 35
.|.||||||||.|||||..||||.||..||||..|
BPUM_2481 1 TTGTCAAAAGGACTTATTCATCATATTGAACTAAATGTTTCGAATTTAAA 50
BSNT_03532___ 36 GGCGTCTAGGCGGTTTTGGGGATGGTTCTTAAAAGAACTTGGCTATAAAG 85
|...||.|.....||||||||.|||||.|||.|.||..|.|||||..|..
BPUM_2481 51 GAATTCGATTATTTTTTGGGGGTGGTTTTTAGAGGAGTTAGGCTACGAGC 100
BSNT_03532___ 86 AGTATCAAAAATGG---AGCTCAGGCATC--AGCTGGA-------AGAA- 122
.||||||||..||| ||| || || ||.|||| ||||
BPUM_2481 101 CGTATCAAACCTGGGAAAGC---GG--TCGAAGTTGGAAATTAGGAGAAA 145
BSNT_03532___ 123 ---AGATCGTTTTTACCTAGTGATTGTGCAGGCGAAAGAGCCATTTCTAG 169
|.||||||| |.||.||..||.|.||.|.||||.|
BPUM_2481 146 CTTATATCGTTT-----------TCGTACAAACGGAGGAACAATTTAT-- 182
BSNT_03532___ 170 AGCCGGA-ATAC-----CATAGATGCCGAGTCGGTCTGAACCATCTCGCA 213
||| |||| ||||||.||.|.|..|||||.|||||.||.||.
BPUM_2481 183 ----GGACATACCCTATCATAGACGCAGGGCAGGTCTAAACCACCTGGCT 228
BSNT_03532___ 214 TTTCATGCTGAATCCAAGCTTCAAGTCGATCAGATGACTGAAAAATTGAC 263
||||||||....|||..||..|||||.|||.|.|||||||||||.||
BPUM_2481 229 TTTCATGCCAGTTCCCGGCAGCAAGTAGATGATATGACTGAAAAGTT--- 275
BSNT_03532___ 264 GGCAAAA--------GGTTA----TCGTGTGTTGTACCGAGAGAGGCATC 301
|||| ||||| || .||.||||||.|.| ||.|
BPUM_2481 276 ---AAAAAGCATAGGGGTTAAAATTC----TTTATACCGATACA--CACC 316
BSNT_03532___ 302 CTTTTGCCGGAGGAGACGGGCATTATGCAGTCTATTGTGAGGATCCGGAC 351
|.||.|..||.||.||....|||||.|||||.||||..||.|||||.||.
BPUM_2481 317 CCTTCGAAGGCGGCGATAAACATTACGCAGTTTATTTCGAAGATCCTGAT 366
BSNT_03532___ 352 CGGATTAAGGTAGAGCTCGTTGCCCCAAGCTGTTAA 387
.|.||.||.||.||..|.||.||.|| ||||
BPUM_2481 367 AGAATGAAAGTTGAATTGGTGGCACC------TTAA 396
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