Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05891 and BPUM_2479

See Amino acid alignment / Visit BSNT_05891 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:27
# Commandline: needle
#    -asequence dna-align/BSNT_05891___dltA.1.24716.seq
#    -bsequence dna-align/BPUM_2479___dltA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05891___dltA-BPUM_2479___dltA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05891___dltA-BPUM_2479___dltA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05891___dltA
# 2: BPUM_2479___dltA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1597
# Identity:    1054/1597 (66.0%)
# Similarity:  1054/1597 (66.0%)
# Gaps:         176/1597 (11.0%)
# Score: 3191.5
# 
#
#=======================================

BSNT_05891___      1 ATGAAACTTTTACATGCTATTCA--------AACACATGCGGAAACTTAT     42
                     ||||||||.|||||..|.|||||        ||||.|   .|||||    
BPUM_2479___d      1 ATGAAACTATTACACACGATTCATGAATACCAACAAA---CGAAAC----     43

BSNT_05891___     43 CCGCAAACCGATGCCTTCCGCTCTCAAGGCCA---GTCGCTCACGTATCA     89
                     |..||.|.|.| ||.||....||||||   ||   .|||.||||.|||.|
BPUM_2479___d     44 CAACACAGCCA-GCATTTGTTTCTCAA---CATGCTTCGATCACATATGA     89

BSNT_05891___     90 GGAATTATGGGAGCAGTCTGACCGCGCGGCTGCCGCGATCCAAAAACGCA    139
                     .||..|.|||.|.|..||.||||....|||||..||||||.|        
BPUM_2479___d     90 TGAGCTTTGGCATCTATCAGACCAAATGGCTGGTGCGATCGA--------    131

BSNT_05891___    140 TTTCTGGGG----AAAAGAAA--TCTCCTATCCTTGTGTACGGCCACATG    183
                         ||.||    .||.||.|  .|.|||.||.||||.|||||.||.|||
BPUM_2479___d    132 ----TGCGGTCACTAATGATAGTGCACCTGTCATTGTATACGGTCATATG    177

BSNT_05891___    184 GAGCCGCACATGATCGTTTCCTTCTTGGGAAGTGTCAAAGCGGGACATCC    233
                     |||||..|.|||.|..||||.|||||.||.|||||.|||.|.||....||
BPUM_2479___d    178 GAGCCAGAGATGCTGATTTCTTTCTTAGGCAGTGTGAAATCAGGTAGGCC    227

BSNT_05891___    234 TTATATTCCGGTTGACCTGTCTATTCCGTCCGAACGGATTGCGAAAATTA    283
                     .||.||||||||.|||.|.||.||.||..||||.||.||.|....|||||
BPUM_2479___d    228 ATACATTCCGGTCGACATTTCAATCCCTGCCGAGCGTATCGTCTCAATTA    277

BSNT_05891___    284 TCGAAAGCTCTGGAG-CAGAAT-TGCTGATCCATGC-----AGCAGGACT    326
                     |.||||||||...|| |||  | ||.||||...|||     |||| ||.|
BPUM_2479___d    278 TTGAAAGCTCAAAAGCCAG--TCTGTTGATTTGTGCTAATGAGCA-GAAT    324

BSNT_05891___    327 CTCAATTGATGCAGTCAGCCAGCAGATTCAGACAGTTTCTGCGGAAGAAC    376
                     .| |.|.||||.|| .||  ||||.|||.|   |||       |||| |.
BPUM_2479___d    325 GT-ACTAGATGTAG-AAG--AGCACATTGA---AGT-------GAAG-AG    359

BSNT_05891___    377 TG-----------------CTGGAAAACGAAGGCAGCTCTGTCATCCAAG    409
                     ||                 ||.|||||.||    |||.|.|.|||||   
BPUM_2479___d    360 TGCGGCATCGCTTTTAGCTCTTGAAAAAGA----AGCACCGCCATCC---    402

BSNT_05891___    410 AT--CAATGGGTTAAGGAACACGAGACGTTTTATATCATTTACACTTCCG    457
                      |  ||.||||||.|..||.|.||...||||||.||||||||.||.||.|
BPUM_2479___d    403 -TCACAGTGGGTTCAACAAGATGATGTGTTTTACATCATTTATACGTCTG    451

BSNT_05891___    458 GGAGCACAGGAAATCCGAAAGGCGTGCAGATTTCCGCTGCGAATCTTCAA    507
                     |.||.||.|||||.|||||||||||.|||.|..|.||....|||.|..||
BPUM_2479___d    452 GCAGTACCGGAAAACCGAAAGGCGTTCAGGTAACAGCCAAAAATTTAGAA    501

BSNT_05891___    508 AGCTTCACAGACTGGATTTGTGC--AGACTTTCCA----GTCAGCGGAGG    551
                     |||||.|||||.||||  |||||  ||||||.|||    ||.||.||.| 
BPUM_2479___d    502 AGCTTTACAGAGTGGA--TGTGCCGAGACTTCCCAATTGGTGAGGGGCG-    548

BSNT_05891___    552 AAAAATATTTTTAAACCAAGCACCGTTCTCATTTGATTTGTCTGTCATGG    601
                        .|..||.|||||.||||||||.||.||.|||||.||.||.||.||||
BPUM_2479___d    549 ---CACGTTCTTAAATCAAGCACCATTTTCTTTTGACTTATCAGTGATGG    595

BSNT_05891___    602 ACCTATATCCGTGC-CTTCAATCAGGCGGGA--CTTTAC-ATTGCGTGAC    647
                     |..|.||||| .|| |||||||||||.||.|  ||.||| .||..||   
BPUM_2479___d    596 ATTTGTATCC-AGCGCTTCAATCAGGTGGCACGCTGTACTGTTTAGT---    641

BSNT_05891___    648 AAAGGATGCT-GTGAACAAGCCGAAAGTCTTATTTGAAG----------A    686
                     |||.||| || |||||.||||||||.|...|.||||.||          |
BPUM_2479___d    642 AAAAGAT-CTAGTGAATAAGCCGAAGGATATGTTTGCAGCACTTGGTCAA    690

BSNT_05891___    687 GCTGAAGAAGTCCGGGCTGAATGTGTGGACATCAACACCTTCCTTTGTGC    736
                     .||||         .|.|||| ||||||||||||||||||||||||||||
BPUM_2479___d    691 TCTGA---------CGTTGAA-GTGTGGACATCAACACCTTCCTTTGTGC    730

BSNT_05891___    737 AAATGTGCCTGATGGATCCGGGTTT--TTCACA--GGATCTGCTGCCTCA    782
                     |||||||..||||||||||    ||  ||.|||  |||.||..|.||..|
BPUM_2479___d    731 AAATGTGTTTGATGGATCC----TTCCTTTACAGGGGAGCTTTTACCAGA    776

BSNT_05891___    783 TGCGGACACATTT-ATGTTTTGCGGAGAGGTTCTTCCGGTTTCTGTGGCA    831
                     | ..||.|..||| .||||.||||||||||..|||||.||.|||||.|||
BPUM_2479___d    777 T-TTGAAAGTTTTCTTGTTCTGCGGAGAGGCACTTCCTGTATCTGTAGCA    825

BSNT_05891___    832 AAAGCGCTGCTTGAGCGTTTTCCGAAAGCGAAGATTTTTAATACGTACGG    881
                     |..||.||.||||||||||||||.||||||.||.|.|||||||||||.||
BPUM_2479___d    826 AGTGCACTCCTTGAGCGTTTTCCAAAAGCGCAGGTCTTTAATACGTATGG    875

BSNT_05891___    882 CCCGACTGAAGCGACAGTGGCTGTCACATCGGTTGAAATTACGGATG---    928
                     .|||||||||||.||.||.||..||||||||.|||||.|.|||.|.|   
BPUM_2479___d    876 TCCGACTGAAGCAACTGTTGCGATCACATCGATTGAAGTCACGCAGGCCA    925

BSNT_05891___    929 -ACGTCATCAGCCACAGCGAATCGCTTCCAGTGGGCTTCGCCAAACCAGA    977
                      .|.|.||||||    .|||.||..|.|||||.||||..||.|||||.||
BPUM_2479___d    926 TTCTTGATCAGC----ACGATTCTTTACCAGTCGGCTATGCGAAACCGGA    971

BSNT_05891___    978 TATGAACATTTTCATTATGGATGAAGAGGGACAGCCGCTTCCTGATGGAG   1027
                     ||...|.||..|||||.|.||||||||.||..||...|||||.|||||.|
BPUM_2479___d    972 TACAGATATCGTCATTTTAGATGAAGAAGGTAAGAACCTTCCGGATGGTG   1021

BSNT_05891___   1028 AAAAAGGAGAAATCGTCATTGCAGGGCCGAGTGTAAGCCGAGGCTACCTT   1077
                     |||||||||||||.|||||||..|||||.||.||.|...||||||||.|.
BPUM_2479___d   1022 AAAAAGGAGAAATTGTCATTGTGGGGCCAAGCGTCACGAGAGGCTACTTA   1071

BSNT_05891___   1078 GGTGAGCCAGAGCTGACGGAAAAAGCGTTTTTCTCTCATGAAGGCCAGTG   1127
                     |||||.|.||...|.|||||.||||.|||.||      ||||..|.|..|
BPUM_2479___d   1072 GGTGAACAAGCCTTAACGGATAAAGTGTTCTT------TGAATACGAAGG   1115

BSNT_05891___   1128 G------GCATACCGAACTGGCGATGCCGGCTTTATTCAAGACGGTCAGA   1171
                     |      ||.||.||.||.||.|||||.||..|....||.||.|||..||
BPUM_2479___d   1116 GCGCCCTGCTTATCGCACAGGAGATGCAGGTGTGGCGCAGGATGGTTTGA   1165

BSNT_05891___   1172 TTTTCTGCCAAGGACGTTTGGATTTCCAAATTAAACTTCACGGCTATCGA   1221
                     ||...|||||.||.|||.||||.|..||||||||.||.|||||.||.||.
BPUM_2479___d   1166 TTACGTGCCACGGTCGTCTGGACTATCAAATTAAGCTGCACGGATACCGG   1215

BSNT_05891___   1222 ATGGAGCTGGAGGAAATCGAGTTCCATGTCAGACAGTCACAGTACGTTCG   1271
                     ||||||||.||.|||||.||.|..|||||.||..||.||..|.|.||   
BPUM_2479___d   1216 ATGGAGCTTGAAGAAATTGAATATCATGTGAGCGAGACAACGCATGT---   1262

BSNT_05891___   1272 CTCTGC-TGTCGTGATT---CCTTATCAGCCAAACGGAACA-GTTGAGTA   1316
                     |..||| ||| ||||||   ||.|..||||||||||| .|| ||.|||||
BPUM_2479___d   1263 CAATGCTTGT-GTGATTGTGCCGTTCCAGCCAAACGG-TCATGTGGAGTA   1310

BSNT_05891___   1317 CCTGATCGCTGCTATTGTGCCTGAGGAGCATGAGTTCGAGAAGGAATTCC   1366
                     |.||||.||.||.|||||.||.|..|.||||...||.||.||.||||..|
BPUM_2479___d   1311 CTTGATTGCAGCCATTGTTCCAGCAGCGCATTCTTTTGAAAAAGAATATC   1360

BSNT_05891___   1367 AGCTGACAAGCGCTATTAAAAAAGAGCTTGCCGCTTCTCTTCCGGCATAT   1416
                     ||||||||||.||.|||||.|||||..|.||.|.|||.||.||.||.||.
BPUM_2479___d   1361 AGCTGACAAGTGCAATTAAGAAAGAAATGGCAGATTCACTGCCTGCGTAC   1410

BSNT_05891___   1417 ATGATCCCGAGAAAATTTATCTATCAGGATCACATTCAAATGACGGCTAA   1466
                     |||||.||.|||||.|||.||||||..||.||..|..|.||||||.|.||
BPUM_2479___d   1411 ATGATTCCAAGAAAGTTTGTCTATCTTGAGCAGCTATACATGACGCCAAA   1460

BSNT_05891___   1467 CGGCAAAATTGACCGAAAACGCATTGGCG-AAGAGGTTCTTGTATGA   1512
                     |||.||..|||||||.|||.| |.|.||| |||||||||||.|||||
BPUM_2479___d   1461 CGGGAAGGTTGACCGTAAAAG-AATCGCGAAAGAGGTTCTTCTATGA   1506


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