Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05891 and BPUM_2479
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:27
# Commandline: needle
# -asequence dna-align/BSNT_05891___dltA.1.24716.seq
# -bsequence dna-align/BPUM_2479___dltA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05891___dltA-BPUM_2479___dltA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05891___dltA-BPUM_2479___dltA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05891___dltA
# 2: BPUM_2479___dltA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1597
# Identity: 1054/1597 (66.0%)
# Similarity: 1054/1597 (66.0%)
# Gaps: 176/1597 (11.0%)
# Score: 3191.5
#
#
#=======================================
BSNT_05891___ 1 ATGAAACTTTTACATGCTATTCA--------AACACATGCGGAAACTTAT 42
||||||||.|||||..|.||||| ||||.| .|||||
BPUM_2479___d 1 ATGAAACTATTACACACGATTCATGAATACCAACAAA---CGAAAC---- 43
BSNT_05891___ 43 CCGCAAACCGATGCCTTCCGCTCTCAAGGCCA---GTCGCTCACGTATCA 89
|..||.|.|.| ||.||....|||||| || .|||.||||.|||.|
BPUM_2479___d 44 CAACACAGCCA-GCATTTGTTTCTCAA---CATGCTTCGATCACATATGA 89
BSNT_05891___ 90 GGAATTATGGGAGCAGTCTGACCGCGCGGCTGCCGCGATCCAAAAACGCA 139
.||..|.|||.|.|..||.||||....|||||..||||||.|
BPUM_2479___d 90 TGAGCTTTGGCATCTATCAGACCAAATGGCTGGTGCGATCGA-------- 131
BSNT_05891___ 140 TTTCTGGGG----AAAAGAAA--TCTCCTATCCTTGTGTACGGCCACATG 183
||.|| .||.||.| .|.|||.||.||||.|||||.||.|||
BPUM_2479___d 132 ----TGCGGTCACTAATGATAGTGCACCTGTCATTGTATACGGTCATATG 177
BSNT_05891___ 184 GAGCCGCACATGATCGTTTCCTTCTTGGGAAGTGTCAAAGCGGGACATCC 233
|||||..|.|||.|..||||.|||||.||.|||||.|||.|.||....||
BPUM_2479___d 178 GAGCCAGAGATGCTGATTTCTTTCTTAGGCAGTGTGAAATCAGGTAGGCC 227
BSNT_05891___ 234 TTATATTCCGGTTGACCTGTCTATTCCGTCCGAACGGATTGCGAAAATTA 283
.||.||||||||.|||.|.||.||.||..||||.||.||.|....|||||
BPUM_2479___d 228 ATACATTCCGGTCGACATTTCAATCCCTGCCGAGCGTATCGTCTCAATTA 277
BSNT_05891___ 284 TCGAAAGCTCTGGAG-CAGAAT-TGCTGATCCATGC-----AGCAGGACT 326
|.||||||||...|| ||| | ||.||||...||| |||| ||.|
BPUM_2479___d 278 TTGAAAGCTCAAAAGCCAG--TCTGTTGATTTGTGCTAATGAGCA-GAAT 324
BSNT_05891___ 327 CTCAATTGATGCAGTCAGCCAGCAGATTCAGACAGTTTCTGCGGAAGAAC 376
.| |.|.||||.|| .|| ||||.|||.| ||| |||| |.
BPUM_2479___d 325 GT-ACTAGATGTAG-AAG--AGCACATTGA---AGT-------GAAG-AG 359
BSNT_05891___ 377 TG-----------------CTGGAAAACGAAGGCAGCTCTGTCATCCAAG 409
|| ||.|||||.|| |||.|.|.|||||
BPUM_2479___d 360 TGCGGCATCGCTTTTAGCTCTTGAAAAAGA----AGCACCGCCATCC--- 402
BSNT_05891___ 410 AT--CAATGGGTTAAGGAACACGAGACGTTTTATATCATTTACACTTCCG 457
| ||.||||||.|..||.|.||...||||||.||||||||.||.||.|
BPUM_2479___d 403 -TCACAGTGGGTTCAACAAGATGATGTGTTTTACATCATTTATACGTCTG 451
BSNT_05891___ 458 GGAGCACAGGAAATCCGAAAGGCGTGCAGATTTCCGCTGCGAATCTTCAA 507
|.||.||.|||||.|||||||||||.|||.|..|.||....|||.|..||
BPUM_2479___d 452 GCAGTACCGGAAAACCGAAAGGCGTTCAGGTAACAGCCAAAAATTTAGAA 501
BSNT_05891___ 508 AGCTTCACAGACTGGATTTGTGC--AGACTTTCCA----GTCAGCGGAGG 551
|||||.|||||.|||| ||||| ||||||.||| ||.||.||.|
BPUM_2479___d 502 AGCTTTACAGAGTGGA--TGTGCCGAGACTTCCCAATTGGTGAGGGGCG- 548
BSNT_05891___ 552 AAAAATATTTTTAAACCAAGCACCGTTCTCATTTGATTTGTCTGTCATGG 601
.|..||.|||||.||||||||.||.||.|||||.||.||.||.||||
BPUM_2479___d 549 ---CACGTTCTTAAATCAAGCACCATTTTCTTTTGACTTATCAGTGATGG 595
BSNT_05891___ 602 ACCTATATCCGTGC-CTTCAATCAGGCGGGA--CTTTAC-ATTGCGTGAC 647
|..|.||||| .|| |||||||||||.||.| ||.||| .||..||
BPUM_2479___d 596 ATTTGTATCC-AGCGCTTCAATCAGGTGGCACGCTGTACTGTTTAGT--- 641
BSNT_05891___ 648 AAAGGATGCT-GTGAACAAGCCGAAAGTCTTATTTGAAG----------A 686
|||.||| || |||||.||||||||.|...|.||||.|| |
BPUM_2479___d 642 AAAAGAT-CTAGTGAATAAGCCGAAGGATATGTTTGCAGCACTTGGTCAA 690
BSNT_05891___ 687 GCTGAAGAAGTCCGGGCTGAATGTGTGGACATCAACACCTTCCTTTGTGC 736
.|||| .|.|||| ||||||||||||||||||||||||||||
BPUM_2479___d 691 TCTGA---------CGTTGAA-GTGTGGACATCAACACCTTCCTTTGTGC 730
BSNT_05891___ 737 AAATGTGCCTGATGGATCCGGGTTT--TTCACA--GGATCTGCTGCCTCA 782
|||||||..|||||||||| || ||.||| |||.||..|.||..|
BPUM_2479___d 731 AAATGTGTTTGATGGATCC----TTCCTTTACAGGGGAGCTTTTACCAGA 776
BSNT_05891___ 783 TGCGGACACATTT-ATGTTTTGCGGAGAGGTTCTTCCGGTTTCTGTGGCA 831
| ..||.|..||| .||||.||||||||||..|||||.||.|||||.|||
BPUM_2479___d 777 T-TTGAAAGTTTTCTTGTTCTGCGGAGAGGCACTTCCTGTATCTGTAGCA 825
BSNT_05891___ 832 AAAGCGCTGCTTGAGCGTTTTCCGAAAGCGAAGATTTTTAATACGTACGG 881
|..||.||.||||||||||||||.||||||.||.|.|||||||||||.||
BPUM_2479___d 826 AGTGCACTCCTTGAGCGTTTTCCAAAAGCGCAGGTCTTTAATACGTATGG 875
BSNT_05891___ 882 CCCGACTGAAGCGACAGTGGCTGTCACATCGGTTGAAATTACGGATG--- 928
.|||||||||||.||.||.||..||||||||.|||||.|.|||.|.|
BPUM_2479___d 876 TCCGACTGAAGCAACTGTTGCGATCACATCGATTGAAGTCACGCAGGCCA 925
BSNT_05891___ 929 -ACGTCATCAGCCACAGCGAATCGCTTCCAGTGGGCTTCGCCAAACCAGA 977
.|.|.|||||| .|||.||..|.|||||.||||..||.|||||.||
BPUM_2479___d 926 TTCTTGATCAGC----ACGATTCTTTACCAGTCGGCTATGCGAAACCGGA 971
BSNT_05891___ 978 TATGAACATTTTCATTATGGATGAAGAGGGACAGCCGCTTCCTGATGGAG 1027
||...|.||..|||||.|.||||||||.||..||...|||||.|||||.|
BPUM_2479___d 972 TACAGATATCGTCATTTTAGATGAAGAAGGTAAGAACCTTCCGGATGGTG 1021
BSNT_05891___ 1028 AAAAAGGAGAAATCGTCATTGCAGGGCCGAGTGTAAGCCGAGGCTACCTT 1077
|||||||||||||.|||||||..|||||.||.||.|...||||||||.|.
BPUM_2479___d 1022 AAAAAGGAGAAATTGTCATTGTGGGGCCAAGCGTCACGAGAGGCTACTTA 1071
BSNT_05891___ 1078 GGTGAGCCAGAGCTGACGGAAAAAGCGTTTTTCTCTCATGAAGGCCAGTG 1127
|||||.|.||...|.|||||.||||.|||.|| ||||..|.|..|
BPUM_2479___d 1072 GGTGAACAAGCCTTAACGGATAAAGTGTTCTT------TGAATACGAAGG 1115
BSNT_05891___ 1128 G------GCATACCGAACTGGCGATGCCGGCTTTATTCAAGACGGTCAGA 1171
| ||.||.||.||.||.|||||.||..|....||.||.|||..||
BPUM_2479___d 1116 GCGCCCTGCTTATCGCACAGGAGATGCAGGTGTGGCGCAGGATGGTTTGA 1165
BSNT_05891___ 1172 TTTTCTGCCAAGGACGTTTGGATTTCCAAATTAAACTTCACGGCTATCGA 1221
||...|||||.||.|||.||||.|..||||||||.||.|||||.||.||.
BPUM_2479___d 1166 TTACGTGCCACGGTCGTCTGGACTATCAAATTAAGCTGCACGGATACCGG 1215
BSNT_05891___ 1222 ATGGAGCTGGAGGAAATCGAGTTCCATGTCAGACAGTCACAGTACGTTCG 1271
||||||||.||.|||||.||.|..|||||.||..||.||..|.|.||
BPUM_2479___d 1216 ATGGAGCTTGAAGAAATTGAATATCATGTGAGCGAGACAACGCATGT--- 1262
BSNT_05891___ 1272 CTCTGC-TGTCGTGATT---CCTTATCAGCCAAACGGAACA-GTTGAGTA 1316
|..||| ||| |||||| ||.|..||||||||||| .|| ||.|||||
BPUM_2479___d 1263 CAATGCTTGT-GTGATTGTGCCGTTCCAGCCAAACGG-TCATGTGGAGTA 1310
BSNT_05891___ 1317 CCTGATCGCTGCTATTGTGCCTGAGGAGCATGAGTTCGAGAAGGAATTCC 1366
|.||||.||.||.|||||.||.|..|.||||...||.||.||.||||..|
BPUM_2479___d 1311 CTTGATTGCAGCCATTGTTCCAGCAGCGCATTCTTTTGAAAAAGAATATC 1360
BSNT_05891___ 1367 AGCTGACAAGCGCTATTAAAAAAGAGCTTGCCGCTTCTCTTCCGGCATAT 1416
||||||||||.||.|||||.|||||..|.||.|.|||.||.||.||.||.
BPUM_2479___d 1361 AGCTGACAAGTGCAATTAAGAAAGAAATGGCAGATTCACTGCCTGCGTAC 1410
BSNT_05891___ 1417 ATGATCCCGAGAAAATTTATCTATCAGGATCACATTCAAATGACGGCTAA 1466
|||||.||.|||||.|||.||||||..||.||..|..|.||||||.|.||
BPUM_2479___d 1411 ATGATTCCAAGAAAGTTTGTCTATCTTGAGCAGCTATACATGACGCCAAA 1460
BSNT_05891___ 1467 CGGCAAAATTGACCGAAAACGCATTGGCG-AAGAGGTTCTTGTATGA 1512
|||.||..|||||||.|||.| |.|.||| |||||||||||.|||||
BPUM_2479___d 1461 CGGGAAGGTTGACCGTAAAAG-AATCGCGAAAGAGGTTCTTCTATGA 1506
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