Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05892 and BPUM_2478
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:27
# Commandline: needle
# -asequence dna-align/BSNT_05892___dltB.1.24716.seq
# -bsequence dna-align/BPUM_2478___dltB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05892___dltB-BPUM_2478___dltB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05892___dltB-BPUM_2478___dltB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05892___dltB
# 2: BPUM_2478___dltB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1261
# Identity: 867/1261 (68.8%)
# Similarity: 867/1261 (68.8%)
# Gaps: 149/1261 (11.8%)
# Score: 2900.5
#
#
#=======================================
BSNT_05892___ 1 ATGACGCCTTACAGCTCGTTTTTATTCTTTATACTGCTTGGCATTCTTCT 50
||||..||.|..||.||.||.||.|||||.||.||..||||..|||||||
BPUM_2478___d 1 ATGATTCCGTTTAGTTCATTCTTTTTCTTCATTCTAATTGGTGTTCTTCT 50
BSNT_05892___ 51 TCTGCCGACGATCATTCTCGGCTTAAACGGAAAAAGATTTCAAGCATACA 100
|.||||||||||||||||.||..||..|||.|||.||.|.||.|..||||
BPUM_2478___d 51 TTTGCCGACGATCATTCTTGGTCTACGCGGCAAACGAATGCAGGGCTACA 100
BSNT_05892___ 101 ACATGTT--CATATCTATCATTATA---TTG----------GCTTTAATT 135
||||||| || | ||| |||| |||
BPUM_2478___d 101 ACATGTTTGCA-------------ACGGTTGTGGCACTCGCGCTT--ATT 135
BSNT_05892___ 136 TTTTCGCACGACTTACACGGGGTCATCGCGCTG------TGCCTGTTTAC 179
||.||..|.||...|||.|| ||||||| |.|.|||||||
BPUM_2478___d 136 TTCTCAAAGGATGCACATGG------CGCGCTGCTGCTCTTCTTGTTTAC 179
BSNT_05892___ 180 AATATGGCAGGTGCTCCTGATCAGCGGC---TATCTGGCATACCGGCAGA 226
|.|.|||||.| ||.||||||.|.|| ||.||..|.||||||..||
BPUM_2478___d 180 AGTTTGGCAAG---TCTTGATCATCCGCCTGTACCTTTCGTACCGGTTGA 226
BSNT_05892___ 227 AAGCGA--ACAGCGGCTTTGTCTTTTGCGGGGCTGTTATCGCGTCTATTC 274
|||||| |.|||| |.||||||.|....|||.||..|.||.||.|||.
BPUM_2478___d 227 AAGCGAATAAAGCG--TCTGTCTTCTATATGGCAGTGGTGGCATCGATTT 274
BSNT_05892___ 275 TGCCTTTATTTCTGTCAAAAATATGGCCGTT-TCTGTCACACCCGCAGCC 323
||||..|..|.||.|||||..|.|..||||| |.|.|.|| .|..|||||
BPUM_2478___d 275 TGCCACTTGTACTCTCAAAGGTTTTACCGTTCTTTTTAAC-TCATCAGCC 323
BSNT_05892___ 324 GCATCATCCGCCGC--AT-AACCTGATCAGCTTTTTAGGGATTTCATATT 370
||||||.||||||| || |||..|.|.||||||||||||||.||.||.|
BPUM_2478___d 324 GCATCAACCGCCGCCAATGAACTGGCTGAGCTTTTTAGGGATCTCGTACT 373
BSNT_05892___ 371 TAACCTTTAAAGGCGTTCAGCTGATTATGGAAGCAAGAGACGGACTGCTG 420
||||.||||||||.||||||.|..||||.||..|||||||.||..||.|.
BPUM_2478___d 374 TAACATTTAAAGGTGTTCAGTTAGTTATCGAGACAAGAGATGGCTTGATT 423
BSNT_05892___ 421 A--AAGAACAGCTGCC-ATTGCACCGCCTGCTGTATTTCATCCTGTTTTT 467
| |||||.| |.|| ||| |||||..||.|.||||||||..|.|||||
BPUM_2478___d 424 AAGAAGAAAA--TTCCGATT-CACCGTTTGGTCTATTTCATTGTCTTTTT 470
BSNT_05892___ 468 CCCGACGATTTCCTCCGGCCCGATCGACAGATACCGCCGGTTCGTCAAGG 517
||||||||||||.||.||.||.||.||..|.|||||||||||.|..||||
BPUM_2478___d 471 CCCGACGATTTCATCAGGTCCAATTGATCGTTACCGCCGGTTTGAAAAGG 520
BSNT_05892___ 518 ATGAACAGAAGGCTTGGACG------AAAGAAGAATACGCCGACCTGTTG 561
|| |.||.|..|.|| ||.||||.||||...|| |.||.
BPUM_2478___d 521 AT------ATGGATACGCCGCCTGAAAAGGAAGCATACAGTGA--TCTTT 562
BSNT_05892___ 562 TATACG--GGAATCCATAAAATCTTCATCGGTTTCCTGTATAAATTTATT 609
|||||| ||..|.||||||||.||.|||||.|||.|.|||||.||.|||
BPUM_2478___d 563 TATACGCCGGTGTTCATAAAATTTTTATCGGCTTCTTATATAAGTTCATT 612
BSNT_05892___ 610 ATCGG----CTACGCGATCAATACGTA-CTTCATCATGAATCTTCCCGCA 654
||.|| ||| ||.||.||||| .||| |.|.||||.|||
BPUM_2478___d 613 ATAGGTTATCTA----ATTAACACGTATATTC-TAACGAATATTC----- 652
BSNT_05892___ 655 ATCAC-------GCA--CAATAAGATTCTT-----GGGAACCTGCTGTAC 690
||||| ||| |||| ||.|| |..||| |||.
BPUM_2478___d 653 ATCACTTTAGCAGCAGTCAAT----TTGTTCAACAGTTAAC-----GTAT 693
BSNT_05892___ 691 ATGTACGGCTACAGCATGTATTTATTCTTTGATTTCGCCGGCTACACGAT 740
|||||.|..|||||.||||||||.||||||||.||.||.|||||.||...
BPUM_2478___d 694 ATGTATGCGTACAGTATGTATTTGTTCTTTGACTTTGCTGGCTATACAGC 743
BSNT_05892___ 741 GTTTGCCGTCGGGGTCAGCTACATTATGGGCATTAAATCACCGGAAAACT 790
.|||||.||.||.||.||.||.||.|||||||||||||||||.|||||||
BPUM_2478___d 744 ATTTGCTGTTGGTGTGAGTTATATCATGGGCATTAAATCACCAGAAAACT 793
BSNT_05892___ 791 TTAATAAACCATTTATCAGTAAAAATATTAAAGATTTCTGGAATCGCTGG 840
||||.|||||.|||||||||...|||||||||||.|||||||||||||||
BPUM_2478___d 794 TTAACAAACCGTTTATCAGTCGGAATATTAAAGACTTCTGGAATCGCTGG 843
BSNT_05892___ 841 CATATGTCTCTGTCATTTTGGTTCAGAGATTATGTGTTTATGAGATTCGT 890
||.|||||.|||||.||.|||||||||||.||.||||||||||||||.||
BPUM_2478___d 844 CACATGTCCCTGTCCTTCTGGTTCAGAGACTACGTGTTTATGAGATTTGT 893
BSNT_05892___ 891 ATTTTGGATGACTAAGAAAAAGTGGATCAAAAACCGTATGGCCGTCTCAA 940
.||.|..|||||.||.||.|||||||||||.|||||||||||.||.||||
BPUM_2478___d 894 GTTCTTTATGACAAAAAAGAAGTGGATCAAGAACCGTATGGCTGTATCAA 943
BSNT_05892___ 941 ACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTT 990
|.||.|||||.||..|.||.|||.|..|||||||.|.||||||.||.||.
BPUM_2478___d 944 ATATTGGGTACTTTGTCCTCTTTCTATTGATGGGTGCTTGGCATGGTCTC 993
BSNT_05892___ 991 GCGCCGCAATATATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTG 1040
||.|..||||||||.||||||||.||.||||||||.|||.|||||.|..|
BPUM_2478___d 994 GCCCTTCAATATATTATTTACGGACTATATCACGCAGTTGTGATGTCCGG 1043
BSNT_05892___ 1041 TTACAA-CTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGCC---- 1085
|||||| ||.||| |||||.||||||||.|||.|.||.|||..|||
BPUM_2478___d 1044 TTACAATCTATTT-GAGAAATGGAATAAAAAACACAAGTGGTGGCCGGAT 1092
BSNT_05892___ 1086 ------GTC-CAACCGCTG-GACAACCATTCTCGCTATTGTGATCACATT 1127
||| |||..|.|| |.|||.|||| ||.|||||
BPUM_2478___d 1093 AACAAGGTCACAATGGTTGTGTCAATCATT------------ATTACATT 1130
BSNT_05892___ 1128 CCATTTCGTTTGCTTCGGGTTTTATATTTTCTCAGGAAAACCATTTCATC 1177
||||.|..||||.|||||.|||||||||||.||||||||||||||||||
BPUM_2478___d 1131 CCATGTGATTTGTTTCGGATTTTATATTTTTTCAGGAAAACCATTTCAT- 1179
BSNT_05892___ 1178 ACCACCATTAA 1188
||||||
BPUM_2478___d 1180 -----CATTAA 1185
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