Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05893 and BPUM_2477

See Amino acid alignment / Visit BSNT_05893 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:27
# Commandline: needle
#    -asequence dna-align/BSNT_05893___dltC.1.24716.seq
#    -bsequence dna-align/BPUM_2477___dltC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05893___dltC-BPUM_2477___dltC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05893___dltC-BPUM_2477___dltC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05893___dltC
# 2: BPUM_2477___dltC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 248
# Identity:     178/248 (71.8%)
# Similarity:   178/248 (71.8%)
# Gaps:          22/248 ( 8.9%)
# Score: 639.5
# 
#
#=======================================

BSNT_05893___      1 ATGGATTTTAAA---CAAG----AGGTATTAGACGTTTTAGCAGAGGTTT     43
                     |||||.||||||   ||||    .|||||||       |.||||||||||
BPUM_2477___d      1 ATGGAATTTAAAAATCAAGTATACGGTATTA-------TTGCAGAGGTTT     43

BSNT_05893___     44 GCCAGGATGACATCGTAAAGGAAAATCCTGATATTGAAATTTTTGAAGAA     93
                     |.|||||.|||.|.||.||.||||||||.||.||||.|||||||||.|||
BPUM_2477___d     44 GTCAGGACGACGTTGTGAAAGAAAATCCAGAGATTGCAATTTTTGACGAA     93

BSNT_05893___     94 GGTTTGCTTGATTCTTTTGGAACAGTAGAATTGCTGCTTGCGATTGAA--    141
                     |||.|.||.|||||.|||||.|||||||||.||||..|.||.||.|||  
BPUM_2477___d     94 GGTCTTCTAGATTCATTTGGTACAGTAGAACTGCTTATGGCAATCGAAAG    143

BSNT_05893___    142 --AACCGTTTTGATATTTTAGTGCCGATCACTGAATTTGACCGGGACGTT    189
                       |||    |||..|||...||.|||||.||.||||||||.||.||.||.
BPUM_2477___d    144 TCAAC----TTGGAATTACTGTTCCGATTACAGAATTTGATCGTGATGTG    189

BSNT_05893___    190 TGGAATACACCTAACAACATTGTAAATCAGCTGTCTGAGTTGAAATAA    237
                     |||.|||||||.||..||||||...|.||||||.|.|||.||||.|||
BPUM_2477___d    190 TGGGATACACCGAATCACATTGCTGAGCAGCTGGCAGAGATGAAGTAA    237


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