Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04111 and BPUM_2471

See Amino acid alignment / Visit BSNT_04111 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:38
# Commandline: needle
#    -asequence dna-align/BSNT_04111___ilvH.1.24716.seq
#    -bsequence dna-align/BPUM_2471___ilvH.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04111___ilvH-BPUM_2471___ilvH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04111___ilvH-BPUM_2471___ilvH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04111___ilvH
# 2: BPUM_2471___ilvH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 539
# Identity:     394/539 (73.1%)
# Similarity:   394/539 (73.1%)
# Gaps:          34/539 ( 6.3%)
# Score: 1446.0
# 
#
#=======================================

BSNT_04111___      1 TTGAAAAGAATTATCACATTGACTGTGGTGAACCGCTCCGGGGTGTTAAA     50
                     ||||||||||||||....||||||||..|.||.||.||.||.||..|.||
BPUM_2471___i      1 TTGAAAAGAATTATTGTGTTGACTGTATTAAATCGATCAGGCGTACTGAA     50

BSNT_04111___     51 CCGGATCACCGGTCTATTCACAAAAAGGCATTACAACATTGAAAGCATTA    100
                     |||.|||||.||.||.||.||.|||.|.||||||||||||||||||||||
BPUM_2471___i     51 CCGAATCACTGGCCTTTTTACTAAACGACATTACAACATTGAAAGCATTA    100

BSNT_04111___    101 CAGTTGGACACACAGAAACAGCCGGCGTTTCCAGA----------ATCAC    140
                     |.||.||.||..|.||          |.|||.|||          |||||
BPUM_2471___i    101 CGGTCGGCCATTCTGA----------GATTCAAGATGTATCACGCATCAC    140

BSNT_04111___    141 CTTCGTCGTTCATGTTGA--AGGAGAAAATGATGTTGAACAGTTAACGAA    188
                     .||||||||.|||||.||  |.||||||  ||..|.||||||.|.||.||
BPUM_2471___i    141 GTTCGTCGTCCATGTAGACCAAGAGAAA--GACATCGAACAGCTGACAAA    188

BSNT_04111___    189 ACAGCTCAACAAACAGATTGATGTACTGAAAGTCACAGACATCACAAATC    238
                     ||||||.||||||||.||||||||.||.|||||.||||||||.|||||.|
BPUM_2471___i    189 ACAGCTGAACAAACAAATTGATGTTCTCAAAGTAACAGACATTACAAACC    238

BSNT_04111___    239 AATCGATTGTCCAGAGGGAGCTGGCCTTAATCAAGGTTGTCTCCGCACCT    288
                     ||||.||.||.|||.|.||||||||.||.||.||.||.||.||.|||||.
BPUM_2471___i    239 AATCAATCGTTCAGCGAGAGCTGGCTTTGATAAAAGTCGTTTCTGCACCA    288

BSNT_04111___    289 TCAACGAGAACAGAGATTAATGGAATCATAGAACCGTTTAGAGCCTCTGT    338
                     .||.|.||||..|||||.|..||..|.||.|||||.||||||||.|||.|
BPUM_2471___i    289 GCATCTAGAATGGAGATCACAGGGGTTATTGAACCCTTTAGAGCTTCTAT    338

BSNT_04111___    339 CGTTGATGTCAGCAGAGACAGCATCGTTGTTCAGGTGACAGGCGAATCTA    388
                     .||.|||||.||||||||.||..||||..|||||||||||||.||.|||.
BPUM_2471___i    339 TGTAGATGTGAGCAGAGAAAGTGTCGTCATTCAGGTGACAGGTGAGTCTT    388

BSNT_04111___    389 ACAAAATTGAAGCGCTTATTGAATTGTTGAAACCTTATGGCATTAAAGAA    438
                     ..|||||||||||.||.||||||||..|.||.||.||.||||||||||||
BPUM_2471___i    389 CAAAAATTGAAGCACTCATTGAATTACTTAAGCCATACGGCATTAAAGAA    438

BSNT_04111___    439 ATCGCGAGAACAGGTA-CACGGCTTTTGCGAGGGGTACCCAGCAAAAGGC    487
                     .||||.|||||.||.| ||||||.||||||||.|.||..|||||||||.|
BPUM_2471___i    439 GTCGCCAGAACTGGCACCACGGCCTTTGCGAGAGATAATCAGCAAAAGCC    488

BSNT_04111___    488 GTCATC-CAATAAAACAATATCTATTGTATAAAACATAA    525
                     | ||.| .|||||||||||.||.|||||.|||       
BPUM_2471___i    489 G-CAACAAAATAAAACAATTTCAATTGTCTAA-------    519


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