Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04110 and BPUM_2470
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:38
# Commandline: needle
# -asequence dna-align/BSNT_04110___ilvC.1.24716.seq
# -bsequence dna-align/BPUM_2470___ilvC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04110___ilvC-BPUM_2470___ilvC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04110___ilvC-BPUM_2470___ilvC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04110___ilvC
# 2: BPUM_2470___ilvC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1040
# Identity: 846/1040 (81.3%)
# Similarity: 846/1040 (81.3%)
# Gaps: 22/1040 ( 2.1%)
# Score: 3445.5
#
#
#=======================================
BSNT_04110___ 1 ATGGTAAAAGTATATTATAACGGTGATATCAAAGAGAACGTATTGGCAGG 50
|||||||||||||||||||||||||||||..||||.||||||||
BPUM_2470___i 1 ATGGTAAAAGTATATTATAACGGTGATATTCAAGAAAACGTATT------ 44
BSNT_04110___ 51 CAAAACAGT--AGCGGTT------ATCGGATACGGTTCGCAAGGCCACGC 92
||||.|| |..|||| ||.|||||.||.||.|||||.||.||
BPUM_2470___i 45 --AAACGGTCAAAAGGTTGCCATCATTGGATATGGATCACAAGGTCATGC 92
BSNT_04110___ 93 ACATGCCCTGAACCTTAAAGAAAGCGGAGTAGACGTGATCGTCGGTGTTA 142
||||||..|||||.|.|||||||||||.|||||.||.|||||.||.||.|
BPUM_2470___i 93 ACATGCATTGAACTTAAAAGAAAGCGGCGTAGATGTTATCGTTGGCGTGA 142
BSNT_04110___ 143 GACAAGGAAAATCTTTCACGCAAGCCCAAGAAGACGGACATAAAGTTTTT 192
||.||||...|||||..||..||||.|||||||||||.|||.|||||||.
BPUM_2470___i 143 GAAAAGGCGGATCTTATACAAAAGCACAAGAAGACGGTCATCAAGTTTTC 192
BSNT_04110___ 193 TCAGTAAAAGAAGCGGCAGCCCAAGCTGAAATCATCATGGTTCTGCTTCC 242
.|||||||||||||||||||.|||||.||..||.|.|||||..|.||.||
BPUM_2470___i 193 ACAGTAAAAGAAGCGGCAGCACAAGCAGATGTCTTGATGGTATTACTACC 242
BSNT_04110___ 243 TGATGAACAGCAGCAAAAAGTATACGAAGCTGAAATCAAAGATGAATT-G 291
.|||||.|||||..|.|||||||||||.|..||||||||||||.|||| |
BPUM_2470___i 243 AGATGAGCAGCAAAAGAAAGTATACGATGAAGAAATCAAAGATCAATTAG 292
BSNT_04110___ 292 ACAGCAGGAAAATCATTAGTATTTGCTCACGGATTTAACGTGCATTTCCA 341
| |||.||.||.|||.|.||.||.||.||||||||.|||||.||.|||||
BPUM_2470___i 293 A-AGCTGGCAACTCACTTGTTTTCGCACACGGATTCAACGTTCACTTCCA 341
BSNT_04110___ 342 TCAAATTGTTCCTCCGGCGGATGTTGATGTAT-TCTTGGTAGCGCCTAAA 390
|||||||||||||||....||.||.||||||| |||| ||||||||.|||
BPUM_2470___i 342 TCAAATTGTTCCTCCAAGTGACGTAGATGTATATCTT-GTAGCGCCAAAA 390
BSNT_04110___ 391 GGTCCGGGACACTTGGTCAGAAGAACATATGAGCAAGGAGCCGGCGTACC 440
|||||.||||||.|.||.||||||||||||||||||||.||.||.|||||
BPUM_2470___i 391 GGTCCAGGACACCTTGTGAGAAGAACATATGAGCAAGGCGCTGGTGTACC 440
BSNT_04110___ 441 TGCATTGTTCGCAATCTATCAAGATGTGACTGGAGAAGC-AAGAGACAAA 489
||||.|.||.||||||||.||||||||..||||..|||| ||| ||||||
BPUM_2470___i 441 TGCACTATTTGCAATCTACCAAGATGTATCTGGTCAAGCGAAG-GACAAA 489
BSNT_04110___ 490 GCTCTCGCATATGCAAAAGGAATCGGTGGCGCAAGAGCGGGAGTATTAGA 539
||.||.||.||||||||||.||||||.||.|||||||||||.||..|.||
BPUM_2470___i 490 GCACTTGCTTATGCAAAAGCAATCGGCGGAGCAAGAGCGGGCGTTCTTGA 539
BSNT_04110___ 540 AACGACATTTAAAGAAGAAACAGAAACAGATTTGTTCGGTGAGCAAGCGG 589
|||.|||||||||||||||||.|||||.|||.|.||||||||||||||.|
BPUM_2470___i 540 AACAACATTTAAAGAAGAAACGGAAACCGATCTATTCGGTGAGCAAGCAG 589
BSNT_04110___ 590 TTCTTTGCGGCGGATTAAGCGCGCTTGTCAAAGCAGGATTTGAAACATTA 639
|.|||||||||||..|.|...|.||.||.||||||||.||||||||||||
BPUM_2470___i 590 TCCTTTGCGGCGGTCTTACTTCACTAGTAAAAGCAGGTTTTGAAACATTA 639
BSNT_04110___ 640 ACTGAAGCAGGTTATCAGCCTGAACTTGCATACTTCGAGTGTCTGCATGA 689
||.|||||||||||||||||.||.|||||||||||.||||||||.|||||
BPUM_2470___i 640 ACAGAAGCAGGTTATCAGCCAGAGCTTGCATACTTTGAGTGTCTACATGA 689
BSNT_04110___ 690 GCTGAAATTAATCGTAGACCTTATGTACGAAGAAGGACTTGCAGGAATGA 739
.||||||.|.|||||.|||||||||||||||||||||.|.|.|||.||||
BPUM_2470___i 690 ACTGAAACTGATCGTTGACCTTATGTACGAAGAAGGATTAGAAGGCATGA 739
BSNT_04110___ 740 GATATTCAATTTCTGACACAGCACAGTGGGGAGATTTCGTATCAGGCCCT 789
||||||||||.|||||.||.|||||.||||||||.|||||||||||.||.
BPUM_2470___i 740 GATATTCAATCTCTGATACGGCACAATGGGGAGACTTCGTATCAGGACCA 789
BSNT_04110___ 790 CGCGTTGTGGATGCTAAAGTAAAAGAATCGATGAAAGAAGTATTAAAAGA 839
||||||||||||||.||.|||||||||||||||||||..||.||.|..||
BPUM_2470___i 790 CGCGTTGTGGATGCAAACGTAAAAGAATCGATGAAAGCTGTCTTGACTGA 839
BSNT_04110___ 840 TATCCAAAACGGTACATTCGCAAAAGAATGGATCGTCGAAAACCAAGTAA 889
||||||||||||.|||||.||||||||||||||.||.|||||||||||.|
BPUM_2470___i 840 TATCCAAAACGGCACATTTGCAAAAGAATGGATTGTTGAAAACCAAGTGA 889
BSNT_04110___ 890 ACCGTCCTCGTTTCAACGCTATCAATGCGAGCGAGAACGAACATCAAATC 939
|.|||||.||||||||.||.||||||||.|..||.||.||.||.|||||.
BPUM_2470___i 890 ATCGTCCACGTTTCAATGCGATCAATGCTAATGAAAATGAGCACCAAATT 939
BSNT_04110___ 940 GAAGTAGTGGGAAGAAAGCTTCGTGAAATGATGCCGTTTGTGAAACAAGG 989
|||||.||.||||||||||||||||||||||||||.||.||.||||||||
BPUM_2470___i 940 GAAGTTGTTGGAAGAAAGCTTCGTGAAATGATGCCTTTCGTCAAACAAGG 989
BSNT_04110___ 990 CAAGAAGAAGGAAGCGGTGGTCTCCGTTGCGCAAAATTAA 1029
.|||||.||||||||||||..|..||.||||.||||||||
BPUM_2470___i 990 AAAGAAAAAGGAAGCGGTGAGCGTCGGTGCGGAAAATTAA 1029
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