Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04108 and BPUM_2468
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:38
# Commandline: needle
# -asequence dna-align/BSNT_04108___leuB.1.24716.seq
# -bsequence dna-align/BPUM_2468___leuB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04108___leuB-BPUM_2468___leuB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04108___leuB-BPUM_2468___leuB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04108___leuB
# 2: BPUM_2468___leuB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1164
# Identity: 775/1164 (66.6%)
# Similarity: 775/1164 (66.6%)
# Gaps: 132/1164 (11.3%)
# Score: 2404.5
#
#
#=======================================
BSNT_04108___ 1 TTG---AAGAAACGTATTGCTCTATTGCCCGGAGACGGGATCGGCCCTGA 47
.|| |||||| |||||.||.||||||||.||.||.|||||.||.||
BPUM_2468___l 1 ATGAAAAAGAAA---ATTGCACTTTTGCCCGGCGATGGAATCGGACCGGA 47
BSNT_04108___ 48 AGTATTAGA-ATCAGCGACAGACGTACTGAAA-----AGTGTTGCCGAAC 91
||| |..|| ||||||....|..||.||.||| ||.| ||..||
BPUM_2468___l 48 AGT-TGTGACATCAGCCGTTGCTGTCCTCAAAGAGACAGCG--GCTCAA- 93
BSNT_04108___ 92 GCTTTAACCATGAATTTGAATTTGAATATGGC-CTGATTGGAGGGGCGGC 140
||||..||.|||||.|||||.||| |.||| ||.|||||.||....||
BPUM_2468___l 94 --TTTAGGCACGAATTCGAATTCGAA-ACGGCGCTTATTGGCGGTATCGC 140
BSNT_04108___ 141 TATTGATGAACATCATAACCCCCTCCCGGAGGAAACCGTTGCTGCTTGTA 190
.||.||||||.|..|.||.||.|||||..|||||||.||||.||..||.|
BPUM_2468___l 141 AATAGATGAAAAAAACAATCCGCTCCCAAAGGAAACGGTTGATGTATGCA 190
BSNT_04108___ 191 AAAATGCAGACGCGATATTGCTTGGTGCTGTCGGCGGACCGAAATGGGAT 240
|.|..||.||.|||||.||..|.||.||.||.||||||||.|||||||||
BPUM_2468___l 191 AGAGCGCTGATGCGATCTTATTAGGAGCAGTTGGCGGACCAAAATGGGAT 240
BSNT_04108___ 241 CAAAATCCTTCGGAACTGAGACCGGAAAAAGGGCTGCTCAGCATCAGAAA 290
|||||.||..|.||.||..|.||.||||||||..|||||..|||..|.||
BPUM_2468___l 241 CAAAACCCACCAGAGCTTCGCCCAGAAAAAGGCTTGCTCGCCATTCGTAA 290
BSNT_04108___ 291 ACAGCTTGATTTGTTTGCGAATTTACGGCCTGTGAAGGTATTTGAAAGCC 340
||||.|.||.||.|||||.||..|.||.|||||.||.||.|||||.|||.
BPUM_2468___l 291 ACAGTTGGACTTATTTGCCAACATTCGTCCTGTCAAAGTGTTTGATAGCT 340
BSNT_04108___ 341 TTTCTGATGCTTCGCCTTTGAAAAAAGAAT-ATATAGATAA---TGTTGA 386
|....||.||.||.||.|| ||||.||.|| |||| ||| .||.||
BPUM_2468___l 341 TAAGCGAGGCGTCACCGTT-AAAACAGGATCATAT---TAACGGAGTCGA 386
BSNT_04108___ 387 TTTCGTTATCGTTCGTGAACTCACAGGCGGCTTGTATTTCGGCCAGCCGA 436
|||.||.||||||||||||.|.||||||||..|.|||||.||..|.||.|
BPUM_2468___l 387 TTTTGTCATCGTTCGTGAATTAACAGGCGGTCTCTATTTTGGTGAACCAA 436
BSNT_04108___ 437 GCAAACGCTATGTAAACACTGAAGGTG-AGCAGGAA--------GCAGTA 477
||.|.|||| |||| ||.|| ||.||||| ||.||.
BPUM_2468___l 437 GCGAGCGCT------ACAC---AGATGAAGAAGGAAAAGAAGCTGCGGTT 477
BSNT_04108___ 478 GATACACTGTTTTATAAGCGAACGGAA---ATTGAACGAGTGATCAGAGA 524
||||||||..|||||| .||.|||| ||||..||.||..|.|.|||
BPUM_2468___l 478 GATACACTCCTTTATA---CAAAGGAAGAGATTGTCCGTGTACTAAAAGA 524
BSNT_04108___ 525 GGGCTTCAAAATGGCGGCAGCCAGA---AAAGGCAAAGTGACCTCTGTAG 571
.|..|||.|.||||||..|.|.||| ||| |||||.||.|||||.|
BPUM_2468___l 525 AGCATTCGACATGGCGTTAACGAGACGGAAA---AAAGTAACGTCTGTGG 571
BSNT_04108___ 572 ATAAAGCGAATGTTCTTGAATCAAGCCGGCTGTGGCGTGAAGTGGCTGAG 621
||||||||||.|||||.|..||.||....||.|||||.||.|.||..||.
BPUM_2468___l 572 ATAAAGCGAACGTTCTGGCTTCTAGTAAACTATGGCGGGATGCGGTAGAA 621
BSNT_04108___ 622 GACGTTGCGAAAGAATTTCCTGATG-TGAAGCTTGAGCACATGCTTGTGG 670
||.||.||.....|||.|||.||.| |||| .|||||||||||||.||.|
BPUM_2468___l 622 GAAGTGGCTTCTCAATATCCGGACGTTGAA-TTTGAGCACATGCTCGTTG 670
BSNT_04108___ 671 ATAACGCGGCCATGCAGCTAATCTA------TGCACCGAATCAATTTGAT 714
||||.||.|||||||||||.||.|| |||| |||||||||
BPUM_2468___l 671 ATAATGCTGCCATGCAGCTGATTTATAAGCCTGCA------CAATTTGAT 714
BSNT_04108___ 715 GTCGTTGTGACTGAAAATATGTTCGGTGATATTTTAAGCGATGAAGCGTC 764
|||.||||.||.||.||||||||.|||||.||||||||.||.||.||.||
BPUM_2468___l 715 GTCATTGTAACAGAGAATATGTTTGGTGACATTTTAAGTGACGAGGCTTC 764
BSNT_04108___ 765 CATGCTTACAGGCTCGCTCGGAATGCTCCCGTCAGCCAGCCTATCAAGCT 814
.|||.||||.||.||.|||||.|||||.||.||.||.||.|||||||||.
BPUM_2468___l 765 AATGATTACTGGATCACTCGGTATGCTGCCATCTGCTAGTCTATCAAGCA 814
BSNT_04108___ 815 CTGGTCTTCATCTGTTTGAACCTGTTCATGGCTCCGCGCCTGATATTGCC 864
|.||.||||||.|.|.|||.||..|||||||.||.||.||.||||||||.
BPUM_2468___l 815 CCGGCCTTCATTTATATGAGCCGATTCATGGATCAGCACCCGATATTGCG 864
BSNT_04108___ 865 GGTAAAGGGGTGGCAAATCCGTTCGCAGCCATATTGTCAGCGGCAA---T 911
||..||...||.|||||.||..|.|||.|.||.||.||.||.|||| |
BPUM_2468___l 865 GGGCAAAACGTCGCAAACCCTCTGGCAACTATTTTATCGGCAGCAAGCTT 914
BSNT_04108___ 912 GCTTTTGAGAACATCTTTCGGGCTTGAAGAGGAAGCGAAAGCTG---TAG 958
|||| |||||.||.||.|.|.|.|||||.|||||| |||| |||
BPUM_2468___l 915 GCTT---AGAACTTCCTTTGCGTTAGAAGAAGAAGCG---GCTGCCATAG 958
BSNT_04108___ 959 AAGATGCGGTAAACAAAG--TCTTGGCTTCTGGGAAAAGAACAAAAGATT 1006
||||.||.|||.| ||.| |||| ||.||.||.|||||||||||.||||
BPUM_2468___l 959 AAGAAGCTGTAGA-AACGGTTCTT-GCCTCAGGCAAAAGAACAAAGGATT 1006
BSNT_04108___ 1007 T---GGCA----CGGG--------------GTGAAGAGTTCAGCAGCACT 1035
| |||| .||| .|||||| ||.||||
BPUM_2468___l 1007 TATCGGCAAAAGAGGGAACGTATCAAACAACTGAAGA------CATCACT 1050
BSNT_04108___ 1036 CAGGCCATTACAGAGGAAGTTAAGGCAGCAATCATGAGTGAAAATACAAT 1085
||.||..||..|||.|.|.|||| ||||.| .|||||| |||||
BPUM_2468___l 1051 CACGCAGTTGTAGACGCACTTAA-GCAGAA------CGTGAAA--ACAAT 1091
BSNT_04108___ 1086 T-TCTAATGTGTGA 1098
| |.|||
BPUM_2468___l 1092 TGTATAA------- 1098
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