Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04107 and BPUM_2467
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:38
# Commandline: needle
# -asequence dna-align/BSNT_04107___leuC.1.24716.seq
# -bsequence dna-align/BPUM_2467___leuC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04107___leuC-BPUM_2467___leuC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04107___leuC-BPUM_2467___leuC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04107___leuC
# 2: BPUM_2467___leuC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1439
# Identity: 1095/1439 (76.1%)
# Similarity: 1095/1439 (76.1%)
# Gaps: 43/1439 ( 3.0%)
# Score: 4127.5
#
#
#=======================================
BSNT_04107___ 1 ATGATGCCTCGAACAATCATCGAAAAGATTTGGGATCAGCATATTGTAAA 50
|||||||||||||||||||||||.||.|||||||||||..||||.||
BPUM_2467___l 1 ---ATGCCTCGAACAATCATCGAAAAAATATGGGATCAGCACGTTGTCAA 47
BSNT_04107___ 51 ACATGGTGAGGGAAAGCCGGATCTTCTCTATATTGATTTGCACCTCATTC 100
|...||.|||||.||.||.||.|||.|.|||||||||.|||||.|..|.|
BPUM_2467___l 48 AAGCGGCGAGGGGAAACCAGACCTTTTATATATTGATCTGCACTTGGTGC 97
BSNT_04107___ 101 ATGAGGTGACGTCTCCTCAGGCATTTGAAGGCTTGAGACAAAAGGGAAGA 150
||||.|||||.||.|||||.||.||||||||.||.||||||||.||..|.
BPUM_2467___l 98 ATGAAGTGACATCGCCTCAAGCGTTTGAAGGATTAAGACAAAAAGGGCGC 147
BSNT_04107___ 151 AAGGTCAGAAGACCCCAAAACACATTTGCGACAATGGACCACAACATCCC 200
|||||.||||||||.|||||.||.|||||.||||||||.|||||||||||
BPUM_2467___l 148 AAGGTGAGAAGACCTCAAAATACGTTTGCAACAATGGATCACAACATCCC 197
BSNT_04107___ 201 GACTGTCAATCGTTTTGAGATAAAGGATGAAGTTGCGAAACGCCA----G 246
||||||.|||||.||||.|||.||.|||||..||||.|||...|| |
BPUM_2467___l 198 GACTGTGAATCGATTTGTGATCAAAGATGAGATTGCTAAAAAACAAGTGG 247
BSNT_04107___ 247 GTAACGGCGCTTGAAAGAAACTGTGAGGAATTTGGCGTGCGCCTTGCCGA 296
|| ||.||.||..|||||||||..||||||||.||.||.||.||.||
BPUM_2467___l 248 GT----GCTCTAGAGCGAAACTGTGCTGAATTTGGTGTCCGTCTAGCTGA 293
BSNT_04107___ 297 TCTTCACAGTGTGGATCAAGGGATTGTCCATGTCGTCGGACCTGAACTGG 346
.|||||||||||.||.|||||.||.|||||||||||.||.||.||.||.|
BPUM_2467___l 294 CCTTCACAGTGTAGACCAAGGAATCGTCCATGTCGTTGGGCCAGAGCTTG 343
BSNT_04107___ 347 GCTTAACGCTTCCAGGGAAAACGATTGTGTGCGGGGACAGTCATACATCA 396
|.||.||.|||||.||||||||.||.||.|||||.||.|||||||||||.
BPUM_2467___l 344 GTTTGACACTTCCGGGGAAAACAATCGTTTGCGGAGATAGTCATACATCC 393
BSNT_04107___ 397 ACACATGGTGCTTTCGGCGCTCTTGCATTTGGGATCGGGACGAGTGAAGT 446
||.|||||.||.||.|||||.|||||.|||||.|||||.||.||||||||
BPUM_2467___l 394 ACTCATGGCGCGTTTGGCGCACTTGCTTTTGGAATCGGTACAAGTGAAGT 443
BSNT_04107___ 447 TGAACATGTCCTTTCCACACAGACACTTTGGCAGCAGCGTCCAAAAACAC 496
.||||||||.|||||||||||.||||||||||||||||||||.||||||.
BPUM_2467___l 444 CGAACATGTACTTTCCACACAAACACTTTGGCAGCAGCGTCCGAAAACAT 493
BSNT_04107___ 497 TTGAAGTGCGCGTAGATGGAACGCTTCAAAAAGGGGTAACGGCAAAGGAT 546
|.|||.|..|.|||||.||||.|||.|||||||||||||||||.||.|||
BPUM_2467___l 494 TAGAAATTAGAGTAGACGGAAAGCTGCAAAAAGGGGTAACGGCCAAAGAT 543
BSNT_04107___ 547 GTCATCCTTGCTGTCATCG--GCAAATACGGTGTGAAATTCGGCACAGGC 594
||.||..|.||.|||||.| ||..|| ||.|||||.|||||..|.||.
BPUM_2467___l 544 GTTATTTTAGCAGTCATTGGTGCGCAT--GGCGTGAAGTTCGGATCGGGT 591
BSNT_04107___ 595 TACGTCATTGAATACACTGGGGAAGTATTCAGAAATATGACGATGGATGA 644
||.||.|||||||||||||||||||||||||||||.|||||.||||||||
BPUM_2467___l 592 TATGTGATTGAATACACTGGGGAAGTATTCAGAAACATGACAATGGATGA 641
BSNT_04107___ 645 ACGAATGACTGTTTGTAACATGTCAATTGAAGCAGGAGCAAGAGCAGGTT 694
|||.||||||||||||||.|||||.|||||||||||.|||||||||||.|
BPUM_2467___l 642 ACGGATGACTGTTTGTAATATGTCGATTGAAGCAGGCGCAAGAGCAGGAT 691
BSNT_04107___ 695 TGATTGCACCTGACGAGGTGACGTTTGAATATTGCAAAAAT------CGC 738
|||||||||||||.||.||.||.||||||||||| | |||
BPUM_2467___l 692 TGATTGCACCTGATGAAGTCACATTTGAATATTG------TCGCGGCCGC 735
BSNT_04107___ 739 AAGTACACGCCAAAAGGCGAAGAATTTGACAAG--GCCGTAGAGGAATGG 786
||.||..|.||..|.||.|||||.||.| ||| ||..|..|.||||||
BPUM_2467___l 736 AAATATGCACCGCAGGGAGAAGACTTCG--AAGCAGCGATTAAAGAATGG 783
BSNT_04107___ 787 AAGGCGCTGCGCACAGACCCGGGCGCTGTTTACGATAAATCTATCGTCCT 836
.|.|..||....|||||.||.||.||....||.||||||.|.||.||..|
BPUM_2467___l 784 GAAGAACTTAAAACAGATCCAGGTGCAACCTATGATAAAACGATTGTTTT 833
BSNT_04107___ 837 TGACGGCAACAAAATTTCCCCTATGGTGACATGGGGCATTAACCCTGGAA 886
.||.||.||..|.|||||.||.|||||.||||||||.||||||||.||||
BPUM_2467___l 834 AGATGGGAATGAGATTTCACCAATGGTCACATGGGGAATTAACCCAGGAA 883
BSNT_04107___ 887 TGGTTCTTCCTGTCGATTCTGAAGTTCCTGCGCCGGA----AAGCTTTTC 932
||||.||.|||||.|||.| .|||..|.|.||| |||.||||.
BPUM_2467___l 884 TGGTGCTGCCTGTAGATGC-----ATCCATCCCAGGACCTGAAGATTTTG 928
BSNT_04107___ 933 TGC-AGAAGATGATAAAAAAGAAGCGATTCGCGCTTATGAATATATGGGA 981
.|| ||||||||||.||||||||||||||||.||.||.|||||.|||||.
BPUM_2467___l 929 CGCAAGAAGATGATCAAAAAGAAGCGATTCGTGCGTACGAATACATGGGT 978
BSNT_04107___ 982 CTGACTCCTCATCAGAAAATTGAAGACATTAAAGTGGAGCACGTATTTAT 1031
.|...|||.|||||....||||||||.||||...|.|||||.||.|||||
BPUM_2467___l 979 GTTCATCCGCATCAACGTATTGAAGATATTACGATTGAGCATGTGTTTAT 1028
BSNT_04107___ 1032 CGGTTCCTGCACAAATTCCCGCATGACTGACCTTCGACAGGCTGCTGACA 1081
.||.||.||.||.||.||..|.||||||||..|.||.||.||.|||...|
BPUM_2467___l 1029 TGGCTCATGTACGAACTCAAGAATGACTGATTTACGCCAAGCAGCTTCTA 1078
BSNT_04107___ 1082 TGATCAAAGGGAAGAAGGTAGCTGA-CAGCGTAAGGGCCATCGTCGTGCC 1130
||||..||||..|.||||||||||| || .||.||.||.||.|||||.||
BPUM_2467___l 1079 TGATAGAAGGACAAAAGGTAGCTGATCA-TGTCAGAGCGATTGTCGTACC 1127
BSNT_04107___ 1131 CGGATCCCAAAGCGTGAAGCTTCAGGCTGAAAAAGAAGGGCTTGACCAGA 1180
.||.||.|||||.||.||..|.|||||.|||.|||||||.|||.|..|.|
BPUM_2467___l 1128 TGGCTCTCAAAGTGTCAAATTGCAGGCAGAAGAAGAAGGTCTTCATAAAA 1177
BSNT_04107___ 1181 TTTTCTTGGAAGCTGGATTTGAATGGAGAGAGTCAGGCTGCAGCATGTGT 1230
|.|||.|.|||||.|||||||||||||||||.||.||||||||.||||||
BPUM_2467___l 1178 TCTTCCTTGAAGCAGGATTTGAATGGAGAGAATCTGGCTGCAGTATGTGT 1227
BSNT_04107___ 1231 TTGAGTATGAATAATGATGTTGTTCCTGAGGGAGAGCGCTGTGCATCAAC 1280
.|.||.||||||||.|||||.||.||.||.||.||.|||||.|||||.||
BPUM_2467___l 1228 CTCAGCATGAATAACGATGTGGTACCAGAAGGCGAACGCTGCGCATCCAC 1277
BSNT_04107___ 1281 CTCTAACCGCAACTTCGAGGGCAGACAAGGAAAAGGTGCAAGAACACATC 1330
.||.|||||.|||||.|||||..|.||||||||||||||.|||||.||||
BPUM_2467___l 1278 ATCAAACCGTAACTTTGAGGGGCGGCAAGGAAAAGGTGCGAGAACGCATC 1327
BSNT_04107___ 1331 TCGTCAGCCCGGCGATGGCTGCGATGGCTGCCATTCACGGACACTTCGTT 1380
|.|||||||||||.|||||.||.|||||.||.||.||.||.|..||.||.
BPUM_2467___l 1328 TTGTCAGCCCGGCAATGGCGGCAATGGCGGCAATACATGGCCGATTTGTC 1377
BSNT_04107___ 1381 GATGTCAGAAAGTTTTATCAGGAAAAAACAGTTGTGTAA 1419
||||||||.||||||.||||.||.||||||||.||||||
BPUM_2467___l 1378 GATGTCAGGAAGTTTAATCAAGAGAAAACAGTCGTGTAA 1416
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