Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04107 and BPUM_2467

See Amino acid alignment / Visit BSNT_04107 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:38
# Commandline: needle
#    -asequence dna-align/BSNT_04107___leuC.1.24716.seq
#    -bsequence dna-align/BPUM_2467___leuC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04107___leuC-BPUM_2467___leuC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04107___leuC-BPUM_2467___leuC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04107___leuC
# 2: BPUM_2467___leuC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1439
# Identity:    1095/1439 (76.1%)
# Similarity:  1095/1439 (76.1%)
# Gaps:          43/1439 ( 3.0%)
# Score: 4127.5
# 
#
#=======================================

BSNT_04107___      1 ATGATGCCTCGAACAATCATCGAAAAGATTTGGGATCAGCATATTGTAAA     50
                        |||||||||||||||||||||||.||.|||||||||||..||||.||
BPUM_2467___l      1 ---ATGCCTCGAACAATCATCGAAAAAATATGGGATCAGCACGTTGTCAA     47

BSNT_04107___     51 ACATGGTGAGGGAAAGCCGGATCTTCTCTATATTGATTTGCACCTCATTC    100
                     |...||.|||||.||.||.||.|||.|.|||||||||.|||||.|..|.|
BPUM_2467___l     48 AAGCGGCGAGGGGAAACCAGACCTTTTATATATTGATCTGCACTTGGTGC     97

BSNT_04107___    101 ATGAGGTGACGTCTCCTCAGGCATTTGAAGGCTTGAGACAAAAGGGAAGA    150
                     ||||.|||||.||.|||||.||.||||||||.||.||||||||.||..|.
BPUM_2467___l     98 ATGAAGTGACATCGCCTCAAGCGTTTGAAGGATTAAGACAAAAAGGGCGC    147

BSNT_04107___    151 AAGGTCAGAAGACCCCAAAACACATTTGCGACAATGGACCACAACATCCC    200
                     |||||.||||||||.|||||.||.|||||.||||||||.|||||||||||
BPUM_2467___l    148 AAGGTGAGAAGACCTCAAAATACGTTTGCAACAATGGATCACAACATCCC    197

BSNT_04107___    201 GACTGTCAATCGTTTTGAGATAAAGGATGAAGTTGCGAAACGCCA----G    246
                     ||||||.|||||.||||.|||.||.|||||..||||.|||...||    |
BPUM_2467___l    198 GACTGTGAATCGATTTGTGATCAAAGATGAGATTGCTAAAAAACAAGTGG    247

BSNT_04107___    247 GTAACGGCGCTTGAAAGAAACTGTGAGGAATTTGGCGTGCGCCTTGCCGA    296
                     ||    ||.||.||..|||||||||..||||||||.||.||.||.||.||
BPUM_2467___l    248 GT----GCTCTAGAGCGAAACTGTGCTGAATTTGGTGTCCGTCTAGCTGA    293

BSNT_04107___    297 TCTTCACAGTGTGGATCAAGGGATTGTCCATGTCGTCGGACCTGAACTGG    346
                     .|||||||||||.||.|||||.||.|||||||||||.||.||.||.||.|
BPUM_2467___l    294 CCTTCACAGTGTAGACCAAGGAATCGTCCATGTCGTTGGGCCAGAGCTTG    343

BSNT_04107___    347 GCTTAACGCTTCCAGGGAAAACGATTGTGTGCGGGGACAGTCATACATCA    396
                     |.||.||.|||||.||||||||.||.||.|||||.||.|||||||||||.
BPUM_2467___l    344 GTTTGACACTTCCGGGGAAAACAATCGTTTGCGGAGATAGTCATACATCC    393

BSNT_04107___    397 ACACATGGTGCTTTCGGCGCTCTTGCATTTGGGATCGGGACGAGTGAAGT    446
                     ||.|||||.||.||.|||||.|||||.|||||.|||||.||.||||||||
BPUM_2467___l    394 ACTCATGGCGCGTTTGGCGCACTTGCTTTTGGAATCGGTACAAGTGAAGT    443

BSNT_04107___    447 TGAACATGTCCTTTCCACACAGACACTTTGGCAGCAGCGTCCAAAAACAC    496
                     .||||||||.|||||||||||.||||||||||||||||||||.||||||.
BPUM_2467___l    444 CGAACATGTACTTTCCACACAAACACTTTGGCAGCAGCGTCCGAAAACAT    493

BSNT_04107___    497 TTGAAGTGCGCGTAGATGGAACGCTTCAAAAAGGGGTAACGGCAAAGGAT    546
                     |.|||.|..|.|||||.||||.|||.|||||||||||||||||.||.|||
BPUM_2467___l    494 TAGAAATTAGAGTAGACGGAAAGCTGCAAAAAGGGGTAACGGCCAAAGAT    543

BSNT_04107___    547 GTCATCCTTGCTGTCATCG--GCAAATACGGTGTGAAATTCGGCACAGGC    594
                     ||.||..|.||.|||||.|  ||..||  ||.|||||.|||||..|.||.
BPUM_2467___l    544 GTTATTTTAGCAGTCATTGGTGCGCAT--GGCGTGAAGTTCGGATCGGGT    591

BSNT_04107___    595 TACGTCATTGAATACACTGGGGAAGTATTCAGAAATATGACGATGGATGA    644
                     ||.||.|||||||||||||||||||||||||||||.|||||.||||||||
BPUM_2467___l    592 TATGTGATTGAATACACTGGGGAAGTATTCAGAAACATGACAATGGATGA    641

BSNT_04107___    645 ACGAATGACTGTTTGTAACATGTCAATTGAAGCAGGAGCAAGAGCAGGTT    694
                     |||.||||||||||||||.|||||.|||||||||||.|||||||||||.|
BPUM_2467___l    642 ACGGATGACTGTTTGTAATATGTCGATTGAAGCAGGCGCAAGAGCAGGAT    691

BSNT_04107___    695 TGATTGCACCTGACGAGGTGACGTTTGAATATTGCAAAAAT------CGC    738
                     |||||||||||||.||.||.||.|||||||||||      |      |||
BPUM_2467___l    692 TGATTGCACCTGATGAAGTCACATTTGAATATTG------TCGCGGCCGC    735

BSNT_04107___    739 AAGTACACGCCAAAAGGCGAAGAATTTGACAAG--GCCGTAGAGGAATGG    786
                     ||.||..|.||..|.||.|||||.||.|  |||  ||..|..|.||||||
BPUM_2467___l    736 AAATATGCACCGCAGGGAGAAGACTTCG--AAGCAGCGATTAAAGAATGG    783

BSNT_04107___    787 AAGGCGCTGCGCACAGACCCGGGCGCTGTTTACGATAAATCTATCGTCCT    836
                     .|.|..||....|||||.||.||.||....||.||||||.|.||.||..|
BPUM_2467___l    784 GAAGAACTTAAAACAGATCCAGGTGCAACCTATGATAAAACGATTGTTTT    833

BSNT_04107___    837 TGACGGCAACAAAATTTCCCCTATGGTGACATGGGGCATTAACCCTGGAA    886
                     .||.||.||..|.|||||.||.|||||.||||||||.||||||||.||||
BPUM_2467___l    834 AGATGGGAATGAGATTTCACCAATGGTCACATGGGGAATTAACCCAGGAA    883

BSNT_04107___    887 TGGTTCTTCCTGTCGATTCTGAAGTTCCTGCGCCGGA----AAGCTTTTC    932
                     ||||.||.|||||.|||.|     .|||..|.|.|||    |||.||||.
BPUM_2467___l    884 TGGTGCTGCCTGTAGATGC-----ATCCATCCCAGGACCTGAAGATTTTG    928

BSNT_04107___    933 TGC-AGAAGATGATAAAAAAGAAGCGATTCGCGCTTATGAATATATGGGA    981
                     .|| ||||||||||.||||||||||||||||.||.||.|||||.|||||.
BPUM_2467___l    929 CGCAAGAAGATGATCAAAAAGAAGCGATTCGTGCGTACGAATACATGGGT    978

BSNT_04107___    982 CTGACTCCTCATCAGAAAATTGAAGACATTAAAGTGGAGCACGTATTTAT   1031
                     .|...|||.|||||....||||||||.||||...|.|||||.||.|||||
BPUM_2467___l    979 GTTCATCCGCATCAACGTATTGAAGATATTACGATTGAGCATGTGTTTAT   1028

BSNT_04107___   1032 CGGTTCCTGCACAAATTCCCGCATGACTGACCTTCGACAGGCTGCTGACA   1081
                     .||.||.||.||.||.||..|.||||||||..|.||.||.||.|||...|
BPUM_2467___l   1029 TGGCTCATGTACGAACTCAAGAATGACTGATTTACGCCAAGCAGCTTCTA   1078

BSNT_04107___   1082 TGATCAAAGGGAAGAAGGTAGCTGA-CAGCGTAAGGGCCATCGTCGTGCC   1130
                     ||||..||||..|.||||||||||| || .||.||.||.||.|||||.||
BPUM_2467___l   1079 TGATAGAAGGACAAAAGGTAGCTGATCA-TGTCAGAGCGATTGTCGTACC   1127

BSNT_04107___   1131 CGGATCCCAAAGCGTGAAGCTTCAGGCTGAAAAAGAAGGGCTTGACCAGA   1180
                     .||.||.|||||.||.||..|.|||||.|||.|||||||.|||.|..|.|
BPUM_2467___l   1128 TGGCTCTCAAAGTGTCAAATTGCAGGCAGAAGAAGAAGGTCTTCATAAAA   1177

BSNT_04107___   1181 TTTTCTTGGAAGCTGGATTTGAATGGAGAGAGTCAGGCTGCAGCATGTGT   1230
                     |.|||.|.|||||.|||||||||||||||||.||.||||||||.||||||
BPUM_2467___l   1178 TCTTCCTTGAAGCAGGATTTGAATGGAGAGAATCTGGCTGCAGTATGTGT   1227

BSNT_04107___   1231 TTGAGTATGAATAATGATGTTGTTCCTGAGGGAGAGCGCTGTGCATCAAC   1280
                     .|.||.||||||||.|||||.||.||.||.||.||.|||||.|||||.||
BPUM_2467___l   1228 CTCAGCATGAATAACGATGTGGTACCAGAAGGCGAACGCTGCGCATCCAC   1277

BSNT_04107___   1281 CTCTAACCGCAACTTCGAGGGCAGACAAGGAAAAGGTGCAAGAACACATC   1330
                     .||.|||||.|||||.|||||..|.||||||||||||||.|||||.||||
BPUM_2467___l   1278 ATCAAACCGTAACTTTGAGGGGCGGCAAGGAAAAGGTGCGAGAACGCATC   1327

BSNT_04107___   1331 TCGTCAGCCCGGCGATGGCTGCGATGGCTGCCATTCACGGACACTTCGTT   1380
                     |.|||||||||||.|||||.||.|||||.||.||.||.||.|..||.||.
BPUM_2467___l   1328 TTGTCAGCCCGGCAATGGCGGCAATGGCGGCAATACATGGCCGATTTGTC   1377

BSNT_04107___   1381 GATGTCAGAAAGTTTTATCAGGAAAAAACAGTTGTGTAA   1419
                     ||||||||.||||||.||||.||.||||||||.||||||
BPUM_2467___l   1378 GATGTCAGGAAGTTTAATCAAGAGAAAACAGTCGTGTAA   1416


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