Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04101 and BPUM_2463
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:37
# Commandline: needle
# -asequence dna-align/BSNT_04101___clpX.1.24716.seq
# -bsequence dna-align/BPUM_2463___clpX.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04101___clpX-BPUM_2463___clpX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04101___clpX-BPUM_2463___clpX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04101___clpX
# 2: BPUM_2463___clpX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1271
# Identity: 1038/1271 (81.7%)
# Similarity: 1038/1271 (81.7%)
# Gaps: 13/1271 ( 1.0%)
# Score: 4218.0
#
#
#=======================================
BSNT_04101___ 1 ATGTTTAAATTTAACGAGGAAAAAGGACAATTAAAATGCTCGTTCTGTGG 50
|||||||||||.||||||||||||||.|||||||||||||||||.||.||
BPUM_2463___c 1 ATGTTTAAATTCAACGAGGAAAAAGGTCAATTAAAATGCTCGTTTTGCGG 50
BSNT_04101___ 51 AAAAACACAAGATCAGGTTCGTAAGCTTGTAGCTGGACCTGGTGTATATA 100
||||||.||||||||.||.|||||.||.||.||.||||||||.|||||||
BPUM_2463___c 51 AAAAACGCAAGATCAAGTGCGTAAACTGGTCGCAGGACCTGGCGTATATA 100
BSNT_04101___ 101 TATGTGACGAATGTATCGAACTCTGCACTGAAATTGTAGAGGAAGAACTC 150
|||||||.|||||||||||.||.|||||.|||||.||.||.|||||.|||
BPUM_2463___c 101 TATGTGATGAATGTATCGAGCTTTGCACGGAAATAGTTGAAGAAGAGCTC 150
BSNT_04101___ 151 GGAACAGAAGAAGAAGTAGAATTTAAAGACGTACCAAAGCCTCAGGAAAT 200
||.||.||.||||||||.|||||.||.||.||.||.||||||||.|||||
BPUM_2463___c 151 GGCACTGAGGAAGAAGTTGAATTCAAGGATGTTCCGAAGCCTCATGAAAT 200
BSNT_04101___ 201 TCGCGAAATT-TTGAATGAATATGTCATCGGCCAAGATCAAGCGAAGAAA 249
|||.||.||| ||| ||||||||||||||||.|||||..|.|||||||||
BPUM_2463___c 201 TCGGGAGATTCTTG-ATGAATATGTCATCGGTCAAGAAAATGCGAAGAAA 249
BSNT_04101___ 250 TCACTT-GCTGTTGCTGTGTATAACCACTATAAGCGCATTAACTCCAACA 298
|| ||| |||||.||.||.|||||.||||||||.||.||.||.||.||||
BPUM_2463___c 250 TC-CTTAGCTGTAGCGGTTTATAATCACTATAAACGGATCAATTCAAACA 298
BSNT_04101___ 299 GCAAAGTTGATGATGTTGAGCTTTCAAAAAGTAATATTTCATTAATCGGC 348
||||..|||||||||||||||||||.|||||||||||.||..|.||.||.
BPUM_2463___c 299 GCAAGATTGATGATGTTGAGCTTTCGAAAAGTAATATCTCTATGATTGGG 348
BSNT_04101___ 349 CCTACGGGAAGCGGTAAAACCCTTCTGGCGCAAACATTGGCTCGCATTTT 398
||.||.||||||||||||||..|.||.||.|||||..|.|||||.|||||
BPUM_2463___c 349 CCAACAGGAAGCGGTAAAACATTACTTGCTCAAACGCTTGCTCGTATTTT 398
BSNT_04101___ 399 AAATGTGCCGTTTGCGATTGCGGACGCTACATCTTTGACTGAAGCTGGAT 448
|||||||||.|||||||||||.||.||.|||||..|.||||||||.||.|
BPUM_2463___c 399 AAATGTGCCATTTGCGATTGCAGATGCAACATCACTAACTGAAGCAGGTT 448
BSNT_04101___ 449 ACGTGGGTGAAGATGTAGAGAATATTCTCTTGAAGCTCATCCAAGCTGCT 498
|.||.||||||||.||||||||||||.|..|.|||||.||||||||.||.
BPUM_2463___c 449 ATGTTGGTGAAGACGTAGAGAATATTTTACTAAAGCTGATCCAAGCAGCC 498
BSNT_04101___ 499 GATTATGATGTGGAAAAAGCCGAAAAAGGCATTATCTATATTGATGAAAT 548
|||||||||||.||||||||.|||||||||||||||||.||.||||||||
BPUM_2463___c 499 GATTATGATGTAGAAAAAGCGGAAAAAGGCATTATCTACATCGATGAAAT 548
BSNT_04101___ 549 CGATAAAGTGGCTAGAAAATCTGAAAACCCGTCTATCACACGTGATGTGT 598
|||||||||.||.||||||||.||||||||.||||||||.||||||||.|
BPUM_2463___c 549 CGATAAAGTAGCAAGAAAATCAGAAAACCCTTCTATCACTCGTGATGTAT 598
BSNT_04101___ 599 CAGGTGAGGGTGTACAGCAGGCATTGCTTAAAATTCTTGAGGGTACAGTG 648
|.||.||.|||||.|||||.|||.|..|.|||||||||||.||.||.||.
BPUM_2463___c 599 CTGGGGAAGGTGTTCAGCAAGCACTATTGAAAATTCTTGAAGGAACTGTC 648
BSNT_04101___ 649 GCAAGCGTACCGCCTCAAGGTGGACGTAAGCATCCTCATCAAGAATTCAT 698
||.||.||||||||||||||||||||||||||||||||||||||||||||
BPUM_2463___c 649 GCTAGTGTACCGCCTCAAGGTGGACGTAAGCATCCTCATCAAGAATTCAT 698
BSNT_04101___ 699 TCAAATTGACACAACAAATATTTTGTTCATTTGCGGCGGAGCTTTCGATG 748
||||||.||.||.||||||||..|.||.|||||.||.|||||.||.||.|
BPUM_2463___c 699 TCAAATCGATACTACAAATATCCTCTTTATTTGTGGTGGAGCCTTTGACG 748
BSNT_04101___ 749 GTATCGAACAAATCATCAAACGCCGTTTAGGCCAAAAAGTGATTGGATTC 798
|.||.||.|||||||||||||||||..||||.||||||||.|||||||||
BPUM_2463___c 749 GCATTGAGCAAATCATCAAACGCCGCCTAGGTCAAAAAGTCATTGGATTC 798
BSNT_04101___ 799 GGTGCCGACAATAAAGCTGCTGATCTTGAGAAAGAAGATCTTCTTTCAAA 848
|||||.||.||||||...|..||||||||.|||||||..|||||.|||||
BPUM_2463___c 799 GGTGCGGAAAATAAAATCGAAGATCTTGAAAAAGAAGTCCTTCTATCAAA 848
BSNT_04101___ 849 AGTGCTTCCAGAAGATTTGCTCCGTTTCGGGTTAATTCCTGAATTTATCG 898
|||.||.||||||||.|||||.||||||||.|||||.||.|||||.||||
BPUM_2463___c 849 AGTACTCCCAGAAGACTTGCTTCGTTTCGGTTTAATCCCAGAATTCATCG 898
BSNT_04101___ 899 GACGTCTT-CCGGTTATTGCAAGCCTTGAAAAGCTTGACGAAGAAGCATT 947
|.|| ||| |||||||||||||||||.||...|.|.||.|||.|||||.|
BPUM_2463___c 899 GCCG-CTTGCCGGTTATTGCAAGCCTAGAGCCGTTAGATGAAAAAGCACT 947
BSNT_04101___ 948 GGTTGCGATCTTAACAAAACCGAAAAACGCTCTTGTTAAGCA--ATTCAA 995
.||.|.||||||.||.||.||.|||||.||.||.|||||||| ||.||
BPUM_2463___c 948 TGTAGAGATCTTGACGAAGCCTAAAAATGCACTCGTTAAGCAGTATACA- 996
BSNT_04101___ 996 GAAAATGCTTGAGCTTGACAACGTTGAGCTTGAGTTTGAAGAAGAAGCGC 1045
|||||||||||||||||..|.||.|||||.||.|||||||||||.||.|
BPUM_2463___c 997 -AAAATGCTTGAGCTTGATGATGTAGAGCTAGAATTTGAAGAAGATGCTC 1045
BSNT_04101___ 1046 TTTCTGAAATTGCTAAAAAAGCAATTGAACGCAAGACTGGAGCACGCGGA 1095
||...||||||||.||||||||||||||.||.||.||.|||||.||.||.
BPUM_2463___c 1046 TTAGCGAAATTGCGAAAAAAGCAATTGAGCGTAAAACAGGAGCTCGTGGT 1095
BSNT_04101___ 1096 CTCCGTTCTATCATTGAAGGCATCATGCTTGATGTGATGTTTGAGCTGCC 1145
||.|||||.|||||||||||||||||||||||||||||||||||.||.||
BPUM_2463___c 1096 CTTCGTTCAATCATTGAAGGCATCATGCTTGATGTGATGTTTGACCTTCC 1145
BSNT_04101___ 1146 TTCTCGTGATGACATTGAAAAATGTGTAATCACCGGGGCAACTGTGACAC 1195
.||.|||||.||.||||||||||||||.|||||.||.|||||.||..|..
BPUM_2463___c 1146 ATCACGTGACGATATTGAAAAATGTGTCATCACTGGTGCAACGGTTGCTG 1195
BSNT_04101___ 1196 ACGGAGAGCCTCCTCGCCTCTTATTAAAAGACGGCACTGAGGTAAGCCAA 1245
|.||.|||.|.||.||.||..|.|||||.||||||||.|..||.|...||
BPUM_2463___c 1196 ATGGCGAGTCGCCGCGTCTTGTGTTAAAGGACGGCACAGTCGTCAATAAA 1245
BSNT_04101___ 1246 GAT---AAAACATCTGCATAA 1263
||| |||||||||||||||
BPUM_2463___c 1246 GATACGAAAACATCTGCATAA 1266
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