Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04095 and BPUM_2459
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:36
# Commandline: needle
# -asequence dna-align/BSNT_04095.1.24716.seq
# -bsequence dna-align/BPUM_2459___ysxD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04095-BPUM_2459___ysxD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04095-BPUM_2459___ysxD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04095
# 2: BPUM_2459___ysxD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 592
# Identity: 298/592 (50.3%)
# Similarity: 298/592 (50.3%)
# Gaps: 200/592 (33.8%)
# Score: 687.5
#
#
#=======================================
BSNT_04095 1 ATGAAACAAAAATCAATTTTATTCCCTTGTCTGCTGCTTGCCGCTT---- 46
.||||..|.|||||.||||| .||||.||| |.|||
BPUM_2459___y 1 TTGAAGAAGAAATCCATTTT---------GCTGCCGCT---CACTTTGCT 38
BSNT_04095 47 --CTG------TATATG-CAT-------GGCTAGAAAGCGGCCAAGCCGA 80
||| |||||| ||| | |.||.|||
BPUM_2459___y 39 GGCTGTAGCGCTATATGCCATTCTCTCCG--------GAGGTCAA----- 75
BSNT_04095 81 ACTGTTTTCA----------GGGCAGGATCAATGGCCTGTTCTCCTCATG 120
|||.| |.|||.||..|||||..|...|||.|..||
BPUM_2459___y 76 -----TTTGACATTTGGAAGGAGCAAGAGAAATGGTATACACTCATACTG 120
BSNT_04095 121 CTGTTAGGCGCAGCCTTTGTATATCAAGGAAAAA------AAGAAGCCGT 164
||.||.|||...||.||..|||||||||||||.| |||||..||
BPUM_2459___y 121 CTTTTTGGCCTTGCTTTCTTATATCAAGGAAAGAAGGAGCAAGAAAGCG- 169
BSNT_04095 165 TACACCCCATTTCTTCATCGGTTTGCTTCTCTTCGGGAT--CGG--CT-- 208
|.|||.|.||.||||||.|||| ||| ||| ||
BPUM_2459___y 170 -----CTCATGTGTTTATCGGTATGCT---------GATGACGGGCCTTT 205
BSNT_04095 209 ---TACACTTTTTTGCCAAGCCGAAATGGGTATGGTGGCC---------- 245
||||||||.||....||||.||||.||..|..|||||
BPUM_2459___y 206 CGCTACACTTTATTCTTCAGCCAAAATTGGACTACTGGCCAGACACATTT 255
BSNT_04095 246 -GGATGAT-----------TTTGAAATGCTCCTCTTTATGATCGGCTTCT 283
.|||||| ||.||..||| |||.|||.|||
BPUM_2459___y 256 ACGATGATTGTATTCATCGTTGGACTTGC-CCTTTTTGTGA--------- 295
BSNT_04095 284 CACTTCTCGTTTCAGCCGTTCAAAAAAAAGAATAT-GTATATGAAGCTGT 332
|.|.||| |||.|||||||||||| |||| ||||..||
BPUM_2459___y 296 -AATCCTC-----------TCAGAAAAAAGAATATCGTAT-TGAAAGTG- 331
BSNT_04095 333 GTCGATGATTTGTTTT--------TC--CCTGTTTTTGTACTT-TTTCAA 371
|||||.| || .|||||..|.||.|| |||| |
BPUM_2459___y 332 ---------TTGTTCTCATTGCACTCGGTCTGTTCCTTTATTTCTTTC-A 371
BSNT_04095 372 ACAAATTATGGCA------------TGGCTT--GAGTCTGCGCATA-TTC 406
.||||||| || |..||| || || |.|| |||
BPUM_2459___y 372 GCAAATTA---CAAAACAGCTAAGTTCCCTTTCGA-TC----CCTACTTC 413
BSNT_04095 407 CAACAGCGCTTCTGAAGGAGTATTGGCCGTTTGTCTTTATTGGAATCAGT 456
||.||.|||| ..|||.|||||.|.|||..|.||.|...|||||
BPUM_2459___y 414 ------CGGTTTTGAA-TTGTACTGGCCTTATGTACTGATAGCTGTCAGT 456
BSNT_04095 457 TTATTGTTATTATTGATAAAACGAAAAAAATCTATACGATAA 498
.|..|.||||||||..|||||.|.|||.||
BPUM_2459___y 457 CTCCTCTTATTATTTTTAAAAAGGAAATAA------------ 486
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