Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04092 and BPUM_2457

See Amino acid alignment / Visit BSNT_04092 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:36
# Commandline: needle
#    -asequence dna-align/BSNT_04092.1.24716.seq
#    -bsequence dna-align/BPUM_2457___hemX.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04092-BPUM_2457___hemX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04092-BPUM_2457___hemX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04092
# 2: BPUM_2457___hemX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 854
# Identity:     544/854 (63.7%)
# Similarity:   544/854 (63.7%)
# Gaps:         157/854 (18.4%)
# Score: 1943.0
# 
#
#=======================================

BSNT_04092         0 --------------------------------------------------      0
                                                                       
BPUM_2457___h      1 ATGTTGGAATCCATTGTAGCGAGACTCAATGAAGCGACGACCTTGATTTA     50

BSNT_04092         0 --------------------------------------------------      0
                                                                       
BPUM_2457___h     51 TGCACTAAGTGTCTTGTTCTATTTCATAGATTTTCTTCAACACAACCGGA    100

BSNT_04092         1 -----------ATGGCCTTCTGGTTGCTTTCTATTGTCTGGACT-CTGCA     38
                                ||.||.|||||||||||||||||||||||| || |||||
BPUM_2457___h    101 AGGCTGGAAAAATAGCTTTCTGGTTGCTTTCTATTGTCTGG-CTGCTGCA    149

BSNT_04092        39 AACCGTGTATTTGGCCTATTTTATGTGGGTGACGGGGCGGTTTCCGGTAT     88
                     |||.||.||..||..||||.|||||..||..||.|..||.||.||.||.|
BPUM_2457___h    150 AACAGTCTACATGTTCTATATTATGATGGAAACAGACCGATTCCCTGTGT    199

BSNT_04092        89 TAAATGTGACGGAGGCGCTTTATTTTTATGCCTGGGTGCTTGTCACGCTG    138
                     |.|||||..|.||||.|.|.|||||||||.|.|||||||||||.||.||.
BPUM_2457___h    200 TGAATGTAGCAGAGGGGTTATATTTTTATACGTGGGTGCTTGTGACACTT    249

BSNT_04092       139 TCACTGGTGCTGACAAAGCTTTTACGTGTTGACTTTATCGTGTTTTTTAC    188
                     |||||.||.||.|||||..|..|.||||||||.||||||||.||||||||
BPUM_2457___h    250 TCACTTGTTCTCACAAAAGTACTTCGTGTTGAATTTATCGTCTTTTTTAC    299

BSNT_04092       189 AAATGTTATAGGATTTTCTATGATCGCCATTCACACATTTTCACCGACAG    238
                     ||||||.||.||.|||||..||||.||.||||||||.|||.||||..|.|
BPUM_2457___h    300 AAATGTCATCGGTTTTTCCTTGATGGCGATTCACACCTTTACACCATCTG    349

BSNT_04092       239 AGCAGCAGTCAGCTGCTTTTTCCGGGCAGCT------TGTATCCGAGCTT    282
                     |.|..||.|||||.|...|..|.|||.||||      ||.||      |.
BPUM_2457___h    350 ATCTTCACTCAGCAGAGCTAACGGGGAAGCTGACGAGTGAAT------TG    393

BSNT_04092       283 TTGGTGATTCATATTACAATGGCGATTCTTTCATACGGCGCTTTTTCCCT    332
                     .|.|||||.||||||||||||||||||.|.||||||||.||.|||||.||
BPUM_2457___h    394 CTAGTGATCCATATTACAATGGCGATTTTATCATACGGTGCCTTTTCGCT    443

BSNT_04092       333 TTCTTTCGTTTTTTCTGTGCTATATATGTTTCAATATCATCTGCTGAAAA    382
                     |||.||.|.|||.|||.|.||.|||.|.||||||||||.|.|||||||||
BPUM_2457___h    444 TTCATTTGCTTTCTCTCTTCTCTATCTCTTTCAATATCGTTTGCTGAAAA    493

BSNT_04092       383 AGAAAAAGTGGGGAAAATGGCTGTTGAGAATAGAAGATTTATCTAAGCTT    432
                     |||||||.|||||.||||||||..|.|||||.|||||||||||.||||||
BPUM_2457___h    494 AGAAAAAATGGGGGAAATGGCTTCTAAGAATTGAAGATTTATCGAAGCTT    543

BSNT_04092       433 GATTATATGGCGTATGTTTTAAATGTCATTGGGGTTCCGATGCTGCTGCT    482
                     |||.|||||||.||.||.|||||..|.|||||.||.||||||||..|.||
BPUM_2457___h    544 GATCATATGGCATACGTATTAAACATTATTGGCGTGCCGATGCTCTTACT    593

BSNT_04092       483 GAGTTTGATTCTCGGCGTCATATGGGCATATGTCTCACTA-GAAACGCTG    531
                     .|||||||||||.|||.||||.|||||||||||.|| .|| ||.|||.||
BPUM_2457___h    594 TAGTTTGATTCTTGGCATCATTTGGGCATATGTTTC-GTATGATACGTTG    642

BSNT_04092       532 TATTGGTTTGACGCCAAAGTGCTTGGTTCGTTTGTCGTCCTGCTGCTGTA    581
                     ||.|||...||.||.||.|||||||||||.|||      .|..|||||| 
BPUM_2457___h    643 TACTGGACAGATGCAAAGGTGCTTGGTTCATTT------ATTATGCTGT-    685

BSNT_04092       582 CAGCTATTAT----------CTT-TATATCAGGCTGATTAAAGAGCTGCA    620
                         |.||||          ||| ||||||||..||.|.|.|.|..||||
BPUM_2457___h    686 ----TTTTATATGGGGTTTACTTATATATCAGATTGGTGAGAAATATGCA    731

BSNT_04092       621 AGGAAAGGTCGCTGCACTGTGGAAT-ACGGCTTGTTTTCTGGTGCTGATG    669
                     .||.||.||||..|||||.|||||| .||| ||..||.||.|||||.|||
BPUM_2457___h    732 GGGCAAAGTCGTGGCACTATGGAATGTCGG-TTCATTCCTTGTGCTTATG    780

BSNT_04092       670 ATCAATTATTTCCTGCTTGGAAGCCTGTCGCAA--TTCCATTGG-TTCAG    716
                     |||||||||||.||||||||.|||.|.|  |||  ||.|||||| ||||.
BPUM_2457___h    781 ATCAATTATTTTCTGCTTGGTAGCTTAT--CAACCTTTCATTGGTTTCAA    828

BSNT_04092       717 TTAA    720
                     |.| 
BPUM_2457___h    829 TAA-    831


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