Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04087 and BPUM_2453
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:36
# Commandline: needle
# -asequence dna-align/BSNT_04087___hemL.1.24716.seq
# -bsequence dna-align/BPUM_2453___hemL.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04087___hemL-BPUM_2453___hemL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04087___hemL-BPUM_2453___hemL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04087___hemL
# 2: BPUM_2453___hemL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1320
# Identity: 995/1320 (75.4%)
# Similarity: 995/1320 (75.4%)
# Gaps: 54/1320 ( 4.1%)
# Score: 3655.0
#
#
#=======================================
BSNT_04087___ 1 ATGAGA---AGCTATGAAAAATCAAA--AACGGCTTTTAAAGAAGCGCAA 45
|||.|| ||||||||||||||||| || ||.|||.|||||||.||.
BPUM_2453___h 1 ATGGGACGTAGCTATGAAAAATCAAAGCAA--GCATTTGAAGAAGCACAG 48
BSNT_04087___ 46 AAACTCATGCCGGGCGGTGTGAACAGTCCCGTTCGCGCATTTAAATCGGT 95
.|..|.|||||.||.|||||.|||||.||.||.||.|||||||||||.||
BPUM_2453___h 49 CATTTAATGCCTGGTGGTGTCAACAGCCCTGTGCGTGCATTTAAATCAGT 98
BSNT_04087___ 96 AGACATGGACCCGATTTTTATGGAGCGCGGAAAAGGCTCGAAAATCTTTG 145
..|||..||.|||||||||||||||||.||.||||||.|.||.||.|.||
BPUM_2453___h 99 GAACACAGATCCGATTTTTATGGAGCGGGGGAAAGGCGCCAAGATATATG 148
BSNT_04087___ 146 ATATTGACGGGAATGAATATATTGACTACGTCTTGTCATGGGGGCCTTTA 195
|||||||.|||||||||||.||.||.||.|||||.|||||||||||..|.
BPUM_2453___h 149 ATATTGATGGGAATGAATACATCGATTATGTCTTATCATGGGGGCCGCTT 198
BSNT_04087___ 196 ATTTTAGGGCATACAAATGACCGCGTCGTAGAAAGCCTCAAAAAAGTGGC 245
||||||||||||||.||||||||.||.||.||||||.|..|...|||.||
BPUM_2453___h 199 ATTTTAGGGCATACGAATGACCGTGTGGTTGAAAGCATTCAGCGAGTTGC 248
BSNT_04087___ 246 TGAATACGGGACAAGCTTTGGTGCTCCGACTGAAGTAGAAAATGAACTGG 295
.|||.|.||||||||||||||||||.|.||...|||.|||||||||.|.|
BPUM_2453___h 249 AGAAAAGGGGACAAGCTTTGGTGCTTCCACATTAGTTGAAAATGAATTAG 298
BSNT_04087___ 296 CTAAGCTCG--TCATTGATCGTGTGCCATCTGTAGAAATTGTACGAATGG 343
|||||||.| ||| ||.||.||.||.|||.|.|||.|..|.||.||||
BPUM_2453___h 299 CTAAGCTTGTATCA--GAGCGGGTTCCTTCTATCGAAGTCATTCGTATGG 346
BSNT_04087___ 344 TAAGCTCCGGAACAGAGGCTACAATGAGTGCCCTCCGTTTGGCAAGGGGC 393
|.|||||.||.||||||||.||.||||||||.||.|||.|.||..|.|||
BPUM_2453___h 347 TCAGCTCTGGTACAGAGGCAACGATGAGTGCACTTCGTCTAGCTCGAGGC 396
BSNT_04087___ 394 TATACGGGCCGCAACAAGATTTTAAAATTTGAGGGCTGCTACCACGGACA 443
|.|||.|||.|.||.||.|||.|.||||||||.||||||||.||.||.||
BPUM_2453___h 397 TTTACAGGCAGAAATAAAATTGTGAAATTTGAAGGCTGCTATCATGGCCA 446
BSNT_04087___ 444 CGGCGATTCTCTCTTGATTAAAGCTGGTTCAGGTGTTGCCACTCTCGGTC 493
|||.||||||.|..|.||||||||.||||||||.||.||.||.||.||.|
BPUM_2453___h 447 CGGGGATTCTTTGCTCATTAAAGCAGGTTCAGGCGTCGCAACGCTTGGGC 496
BSNT_04087___ 494 TGCCTGACAGCCCGGGGGTGCCTGAAGGCATTGCGAAAAACACCATCACC 543
|.||.||.||.||.||.||.||||||||.|.|||.|..||.||.|||||.
BPUM_2453___h 497 TTCCAGATAGTCCAGGTGTACCTGAAGGGACTGCAAGCAATACGATCACA 546
BSNT_04087___ 544 GTTCCGTACAATGATTTAGAAAG--TGTAAAGCTTGCTTTCCAGCAATTC 591
||.||.||.|||||||||||||| | |.||| ||||.||.|||.|.||.
BPUM_2453___h 547 GTGCCTTATAATGATTTAGAAAGCAT-TCAAG-TTGCATTTCAGGAGTTT 594
BSNT_04087___ 592 GGTGAAGACATTGCGGGAGTCATTGTAGAGCCAGTTGCCGGAAATATGGG 641
||.||.||.|||||.|||||.|||||.|||||.|||||.|||||||||||
BPUM_2453___h 595 GGGGACGATATTGCAGGAGTGATTGTCGAGCCGGTTGCAGGAAATATGGG 644
BSNT_04087___ 642 TGTTGTTCCGCCGCAAGAAGGCTTCCTGCAGGGTCTGCGTGATATCACTG 691
.|||||.||.||||||||.||.|||.|.||.||.|||.|.||||||||.|
BPUM_2453___h 645 CGTTGTCCCTCCGCAAGACGGTTTCTTACAAGGGCTGAGAGATATCACAG 694
BSNT_04087___ 692 AGCAGTACGGCTCCCTGCTGATTTTTGATGAGGTGATGACAGGCTTCCGG 741
||||.|||||..||.|.||.||||||||||||||.|||||.||||||||.
BPUM_2453___h 695 AGCAATACGGAGCCTTACTCATTTTTGATGAGGTCATGACCGGCTTCCGT 744
BSNT_04087___ 742 GTCGATTATAACTGCGCTCAAGGTTACTTCGGCGTAACGCCTGATCTGAC 791
||.||||||.|||||||.|||||.|||||.|||||.||.|||||||||||
BPUM_2453___h 745 GTGGATTATCACTGCGCACAAGGCTACTTTGGCGTCACACCTGATCTGAC 794
BSNT_04087___ 792 TTGTTTAGGAAAAGTAATCGGGGGCGGACTTCCTGTCGGCGCTTATGGCG 841
.|||.|.||.|||||.||.||.|||||.||.||.|||||.||||||||||
BPUM_2453___h 795 GTGTCTTGGTAAAGTGATTGGTGGCGGTCTCCCGGTCGGTGCTTATGGCG 844
BSNT_04087___ 842 GAAAGGCAGAAATCATGGAG-CAGATCGCTCCAAGCGGTCCGATCTATCA 890
|||..||.||.||.|| ||| ||.||.||.|||||||||||.||.|||||
BPUM_2453___h 845 GAAGAGCGGATATTAT-GAGACAAATTGCGCCAAGCGGTCCAATTTATCA 893
BSNT_04087___ 891 AGCTGGTACATTGTCAGGCAACCCGCTTGCGATGACGGCTGGCTTAGAGA 940
|||.||.||.||.||.||.|||||.|||||||||||.||.||||||||.|
BPUM_2453___h 894 AGCAGGAACGTTATCTGGTAACCCACTTGCGATGACAGCAGGCTTAGAAA 943
BSNT_04087___ 941 CATTGAAACAGCTGACACCTGAATCCTAC-AAGAATTTCATCAA----AA 985
|.||.|||||||||||||||||.||.||| ||||.||| | ||
BPUM_2453___h 944 CCTTAAAACAGCTGACACCTGAGTCTTACGAAGAGTTT-----AGACGAA 988
BSNT_04087___ 986 AAGGCGACAGGCTGGAAGAAGGAATTTCAAAAGCCGCCGAGGCTCATGGT 1035
||||.|||.|||||||||||||.||||||||.||.||..|..|.||.||.
BPUM_2453___h 989 AAGGAGACCGGCTGGAAGAAGGCATTTCAAATGCGGCGAAAACACACGGA 1038
BSNT_04087___ 1036 ATTCCGCAT--ACCTTTAACCGTGCAGGTTCGATGATCGGTTTCTTCTTT 1083
|||| ||| ||.|||||||||||.|||||||||||.||.|||||||||
BPUM_2453___h 1039 ATTC--CATTAACGTTTAACCGTGCGGGTTCGATGATTGGATTCTTCTTT 1086
BSNT_04087___ 1084 ACTAACGAACCAGTCATTAATTATGGAACAGCGAAA-----TCATC---- 1124
||..|.|||..|||.||.|||||||..|.|||.||| |.|||
BPUM_2453___h 1087 ACAGATGAAGAAGTGATCAATTATGACATAGCCAAAAATGCTGATCTCGC 1136
BSNT_04087___ 1125 -TGATTTGAAGCTGTTCGCAAGCTATTATAAAGGGATGGCAAATGAAGGG 1173
|.|||| |||| || |.|||.||.|..|||||..||.|.||.
BPUM_2453___h 1137 TTTATTT---GCTG-----AA--TTTTACAAGGAAATGGCCGATCACGGT 1176
BSNT_04087___ 1174 GTATTCCTTCCGCCATCACAATTCGAAGGTCTTTTCCTCTCAACGGCCCA 1223
.|.||||||||.||.||.|||||||||||.||.|||||.|||||.|||||
BPUM_2453___h 1177 ATCTTCCTTCCACCTTCTCAATTCGAAGGACTGTTCCTGTCAACAGCCCA 1226
BSNT_04087___ 1224 TACTGATGAAGATATTGAAAACACAATCCAGGCAGCTGAGAAAGTATTTG 1273
|||.||||||||.||.|||.|.||.||..||.|||..||.|||||||||
BPUM_2453___h 1227 TACAGATGAAGACATCGAATATACGATTGAGACAGTGGAAAAAGTATTT- 1275
BSNT_04087___ 1274 CTGAGATCAGCCGCAGATAA 1293
|..|.|..| ||..|||||
BPUM_2453___h 1276 CAAAAACTA--CGTCGATAA 1293
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