Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04079 and BPUM_2448
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:35
# Commandline: needle
# -asequence dna-align/BSNT_04079___folC.1.24716.seq
# -bsequence dna-align/BPUM_2448___folC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04079___folC-BPUM_2448___folC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04079___folC-BPUM_2448___folC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04079___folC
# 2: BPUM_2448___folC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1450
# Identity: 867/1450 (59.8%)
# Similarity: 867/1450 (59.8%)
# Gaps: 302/1450 (20.8%)
# Score: 2362.0
#
#
#=======================================
BSNT_04079___ 1 ------TTGTTTACTGCATATCAAGATGCGCGCAGC-------TGGATTC 37
||||||||..|.|||||.|| ||| |||||||
BPUM_2448___f 1 ATGACATTGTTTACAACCTATCATGA-------AGCCATTGAGTGGATTC 43
BSNT_04079___ 38 ACGGGAGGCTGAAATTCGGGGTGAAGCCCGGACTTGGCCGAATGAAACAG 87
||.|.||.|||...||.||.||.||.||.||.||||...|||||||...|
BPUM_2448___f 44 ACAGTAGACTGGCCTTTGGTGTAAAACCGGGTCTTGAAAGAATGAAGTGG 93
BSNT_04079___ 88 CTGATG-----GCGCGGTTAGGACATCCTGAAAAA-----AAAATCCGAG 127
|||||| .| ||.|.|||||.|||.|| ||| ||
BPUM_2448___f 94 CTGATGAACAAAC-----TAAGCCATCCGGAACAACGCATAAA-----AG 133
BSNT_04079___ 128 CGTTCCACGTCGCAGGAACAAACGGTAAAGGATCAACTGTCGCTTTTA-- 175
|..||||.||.||.||.|||||.||.|||||.|||||..|.||.||||
BPUM_2448___f 134 CAGTCCATGTTGCGGGTACAAATGGAAAAGGTTCAACGATTGCGTTTACT 183
BSNT_04079___ 176 ---TCCGTTCTATGCTGCAGGAAGCCGGATATACGGTTGGAACATTTACA 222
||||||.|| ||||.|||.||.|||.|.||.||.||.||.||.
BPUM_2448___f 184 CGTTCCGTTTTA-----CAGGCAGCAGGCTATTCAGTCGGCACCTTCACC 228
BSNT_04079___ 223 TCGCC--TTATATTATTACGTTTAATGAACGGATCAGCGTAAACGGGATA 270
||.|| ||||.||| |||||.||||||||.||||||||.|||||...|
BPUM_2448___f 229 TCTCCGTTTATCTTA--ACGTTCAATGAACGAATCAGCGTGAACGGAGCA 276
BSNT_04079___ 271 CCGATTTCA-GATGAGGAATGGACAGCAC------TCGTCAATCAAATGA 313
||.| |.|| |||||.|||||| | |.||.|||.||||.|
BPUM_2448___f 277 CCTA-TACAGGATGAAGAATGG------CTGAGTTTGGTGAATAAAATCA 319
BSNT_04079___ 314 AACCGCACGTTGAAGCCCTTGATCAAACGGA-ATACGGACAGCCGACAGA 362
|.||....|||||.|...|.||||||||.|| .|..|..||| |.|||||
BPUM_2448___f 320 AGCCTTTTGTTGATGAGTTAGATCAAACAGAGCTTGGCGCAG-CAACAGA 368
BSNT_04079___ 363 ATTTGAAATTATGACGGCCTGTGCATTTTTATATTTTGCAGAATTTCATA 412
.||||||||.||.||.||.|||||||||...||||||||.||..|.||..
BPUM_2448___f 369 GTTTGAAATCATTACTGCATGTGCATTTGCTTATTTTGCCGATGTACAAC 418
BSNT_04079___ 413 AGGTCGATTTTGTTATTTTTGAAACAGGTTTGGGCGGTAGATTCGATTCT 462
|.||.||.|||||..|.||.||.|||||..|.|||||.|||.|.|||||.
BPUM_2448___f 419 AAGTAGACTTTGTCCTATTAGAGACAGGCCTTGGCGGAAGACTTGATTCA 468
BSNT_04079___ 463 ACTAATGTGGTTGAACCGC-----TCTTAACTGTGATTACAAGCATTGGA 507
||.|||||.| |||| |||||||.|.||||||....|||||.
BPUM_2448___f 469 ACAAATGTTG-----CCGCCCCTATCTTAACAGCGATTACGTCGATTGGT 513
BSNT_04079___ 508 CACGATCATATGAATATTTTGGGAAACACCATTGAAGAAATTGCAGGAGA 557
||.|||||||||...|||||.||..||||..|||||.||||||||...||
BPUM_2448___f 514 CATGATCATATGGCGATTTTAGGTGACACACTTGAACAAATTGCATCTGA 563
BSNT_04079___ 558 AAAGGCCGGTATTATTAAAGAAGGTATTCCAATCGTTACAGCAGTTACC- 606
|||.||.||.|||||.||||..||||||||.||..|.||.||.|| ||
BPUM_2448___f 564 AAAAGCAGGCATTATCAAAGTCGGTATTCCGATGATCACTGCTGT--CCA 611
BSNT_04079___ 607 -CAGCCGGAAGCT-TTACAGGTCAT--------CCGCCACGAAGCCGAA- 645
||.||||||||| ||.| |||||| .|||.| |||...||
BPUM_2448___f 612 TCAACCGGAAGCTCTTGC-GGTCATTCAAAACATCGCAA--AAGAAAAAA 658
BSNT_04079___ 646 ---CGGCATGCTGCGCCGTTCCAGTCATTGCATGATGCATGTGTTATTTT 692
|||.||| |.|| |||||.||.||..|.|| ||..||
BPUM_2448___f 659 AGGCGGAATG------CATT----TCATTACAAGAGACCTG---TACCTT 695
BSNT_04079___ 693 CAATGAAGAGGCTCTGCC------TGCAGGAGAACAGTTTTCAT------ 730
||.|.|..|| |.||| ..||||||||||.|||.|||
BPUM_2448___f 696 CAGTCATCAG---CAGCCAACAGAAACAGGAGAACAATTTACATTAAACA 742
BSNT_04079___ 731 --TCAAAACGGAAGAGAAAT-----GCTATGAA-----GATATTCGGACA 768
||||||.||.|| .|| ||| |||| |.||.|||||
BPUM_2448___f 743 CATCAAAAAGGCAG---TATCCACAGCT-TGAAACAGGGTTAATCGGA-- 786
BSNT_04079___ 769 TCTCTGATTGGCACCCATCAAAGACAAAATGCTGCTTTGTCCATT----T 814
||.||||||.||||||||||| |||.|| |
BPUM_2448___f 787 ------------ACGCATCAACGACAAAATGCT------TCCCTTGCTGT 818
BSNT_04079___ 815 TGGCTGC----GGAGTGGCT----CAATAAGGAGAATATCGCCCATATCA 856
| |||| .||.||||| |||.|||| |.||||.|
BPUM_2448___f 819 T--CTGCTCATTGAATGGCTCGAGCAAGAAGG----------CTATATTA 856
BSNT_04079___ 857 --GTGAC-GAAGCGTTAAGGAGCGGGCTTGTGAAG-----------GCTG 892
||||| ||| ||||..|..|.||||| ||.|
BPUM_2448___f 857 GCGTGACAGAA--------GAGCAAGTATATGAAGGTATTCGGCATGCAG 898
BSNT_04079___ 893 CTTGGCCGGGACGGTTAGAGCTTGTTCAGGAACATCCTCCGGTATATTTA 942
.||||.|.|||.|.||.||....||..|.||.|||||.||.||.||||||
BPUM_2448___f 899 TTTGGGCTGGAAGATTTGAAAAAGTCAAAGACCATCCACCAGTTTATTTA 948
BSNT_04079___ 943 GACGGTGCGCATAACGAAGAAGGTGTTGAAAAGCTGGCG-------GAAA 985
|||||.||.|||||.|||||||| ||.|...|| ||||
BPUM_2448___f 949 GACGGCGCTCATAATGAAGAAGG-------AATCGACCGCTTAATTGAAA 991
BSNT_04079___ 986 CGAT-GAAGCAGCGTTTCGCCAATTCAC----GCATTACTGTGGTGTTTA 1030
||.| .|||| .|.|||..|.|.|..|| ||||..|||| ||||
BPUM_2448___f 992 CGGTACAAGC-CCATTTTTCTAGTAAACAAGTGCATATCTGT----TTTA 1036
BSNT_04079___ 1031 GCGCGTTAAAGGACAAACCGTATCAGAACATGATT-AAAAGACTGGAAAC 1079
|.||.|||||.||.||.|||||..||.|.|||||| ||||| ||.|||.|
BPUM_2448___f 1037 GTGCTTTAAAAGATAAGCCGTACAAGCAAATGATTCAAAAG-CTTGAAGC 1085
BSNT_04079___ 1080 CAT-TGCTCATGCGATTCATTTTGCTTCTTTTGATTTCCCGCGTGC---T 1125
..| .|.|| |.|.||.|||||||.|||.||||||||.||..|.|| .
BPUM_2448___f 1086 TGTAAGTTC-TTCTATCCATTTTGTTTCATTTGATTTTCCAAGAGCCGAA 1134
BSNT_04079___ 1126 TCTCTTGC--AAAAGATCTCTATG-ATGCA---AGTGAAATCAGCAATAA 1169
|| .|| ||||| ||.|||| ||||| |||.|.| .||||.|
BPUM_2448___f 1135 TC---AGCGGAAAAG--CTTTATGCATGCAGTCAGTTAGA--GGCAAAA- 1176
BSNT_04079___ 1170 AAGCTGGAGTGAAGATCCAGACGAT-GTG------ATCAA---ATTCATA 1209
|.|..|||.||| |||..| ||| .|.|| |||||.|
BPUM_2448___f 1177 ----TCGTATGATGAT---GACCCTCGTGCAGTACTTGAATGGATTCAGA 1219
BSNT_04079___ 1210 GAAAGCAAAAAGGGCTCAAATGAAATT---ACGCTGATT------ACCGG 1250
.|||| ||.| ||||...| .||.||||| ||.||
BPUM_2448___f 1220 AAAAG-----AGTG-----ATGATCCTTCAGCGGTGATTCTTGTGACAGG 1259
BSNT_04079___ 1251 ATCTCTTTACTTTATTTCTGACATTCGAAA----AAGGTTG---AAATAA 1293
.||||||||.||||||||.||.||.||||| |.|.||| ||
BPUM_2448___f 1260 CTCTCTTTATTTTATTTCAGATATACGAAATCGTATGATTGGGTAA---- 1305
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