Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04071 and BPUM_2445
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:35
# Commandline: needle
# -asequence dna-align/BSNT_04071___maf.1.24716.seq
# -bsequence dna-align/BPUM_2445___maf.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04071___maf-BPUM_2445___maf.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04071___maf-BPUM_2445___maf.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04071___maf
# 2: BPUM_2445___maf
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 615
# Identity: 392/615 (63.7%)
# Similarity: 392/615 (63.7%)
# Gaps: 90/615 (14.6%)
# Score: 1161.5
#
#
#=======================================
BSNT_04071___ 1 ATGA--CAAAACCGTTAATACTTGCATCACAATCTCCGCGCAGGAAAGAA 48
|||| ||| ||.||.||.|||||.||.||.||..|.||.||||||
BPUM_2445___m 1 ATGAACCAA-----TTGATTCTCGCATCGCAGTCACCTAGAAGAAAAGAA 45
BSNT_04071___ 49 CTCCTCGATCTTCTCCAGCTGCCCTACTCCATTATTGTCAGTGAAG---- 94
.|.||.||||| |||.|...| |.| ||| ||.||.|.|||
BPUM_2445___m 46 TTGCTAGATCT-----AGCAGGGTT--TTC-TTA-TGACATTCAAGCAAG 86
BSNT_04071___ 95 -----TAGAAGAAAAATTAAATCGAAACTTTTCACCAGAAGAAAACGTCC 139
||.|||||.||.|||||||||||.||||.||.|..||.|||||||
BPUM_2445___m 87 TCATTTAAAAGAAGAAATAAATCGAAACCTTTCTCCTGCTGAGAACGTCC 136
BSNT_04071___ 140 AATGGTTGGCAAAACAAAAAGCTAAGGCTGTAGCTGATCTCCA------- 182
|||||||||||.||||||||||.|| ||||.|.||
BPUM_2445___m 137 AATGGTTGGCAGAACAAAAAGCAAA---------TGATATTCAAAGATTA 177
BSNT_04071___ 183 ---CCCGCATGCAATCGTTATCGGTGCTGATACAATGGTATGC-CTTGAC 228
||| .|.||..|.||.||.|||||.||||||||.|| ||| .|||||
BPUM_2445___m 178 AATCCC-AAAGCTGTGGTCATTGGTGCAGATACAATTGT-TGCAATTGAC 225
BSNT_04071___ 229 GGCGAATGCCTTGGCAAACCGCAGGATCAAG-AAGAAGCTGCTTCTATGC 277
|||.||||.|||||.|||||..|.||| ||| |||||||.||||..||||
BPUM_2445___m 226 GGCAAATGTCTTGGGAAACCAAAAGAT-AAGAAAGAAGCAGCTTTCATGC 274
BSNT_04071___ 278 TGCGGAGGCTT-TCAGGCCGAAGTCAC-TC-AGTAATAACCGCGGTCAGC 324
|.| .|...|| ||||| .|||.||| || |||..|.||.|..||||..
BPUM_2445___m 275 TTC-AATTATTATCAGG--AAAGACACATCAAGTCTTGACGGGTGTCACG 321
BSNT_04071___ 325 ATTCAAGCTGAAAATCACAGCGAGACTTTTTATGATAAGACAGAAGTTGT 374
.||||..|.||.|||...|..||.||.||||||||..||||||||||...
BPUM_2445___m 322 GTTCAGTCAGAGAATAGAAAAGAAACATTTTATGAACAGACAGAAGTGAC 371
BSNT_04071___ 375 GTTTTGGTCCCTCAGTGAAGAAGAGATTTGGAC--GTATATTGAAACAAA 422
.||||||.|.||.|.|.||.|.||.| |.||| .|||||.|||||...
BPUM_2445___m 372 ATTTTGGACGCTGACTCAAAATGAAA--TAGACCGCTATATCGAAACGGG 419
BSNT_04071___ 423 AGAGCCGATGGATAAAGCAGG-TGCATACGGCATCCAAGGAAGAGGCGCG 471
.||.||..|.||||||||.|| .|| ||.|||||.|||||.|.||||||.
BPUM_2445___m 420 CGAACCCCTTGATAAAGCGGGAAGC-TATGGCATTCAAGGGAAAGGCGCA 468
BSNT_04071___ 472 CTTTTTGTAAAGAAAATAGACGGAGATTATTATTCAGTCATGGGCCTTCC 521
||.|||||..|.||||||||.||.|||||||.|||.||..|.||.||.||
BPUM_2445___m 469 CTGTTTGTTCAAAAAATAGATGGTGATTATTTTTCCGTTGTCGGTCTACC 518
BSNT_04071___ 522 TATATCAAAAACAATGAGAGTTCTT----------------CGCCACTTT 555
|||..||||||||.|.|||||.||| |.||..|||
BPUM_2445___m 519 TATTGCAAAAACAGTCAGAGTGCTTGAAACCTTTGGAATCACCCCTTTTT 568
BSNT_04071___ 556 GATATAAGGGCATGA 570
||
BPUM_2445___m 569 GA------------- 570
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