Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04070 and BPUM_2444
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:35
# Commandline: needle
# -asequence dna-align/BSNT_04070___radC.1.24716.seq
# -bsequence dna-align/BPUM_2444___radC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04070___radC-BPUM_2444___radC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04070___radC-BPUM_2444___radC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04070___radC
# 2: BPUM_2444___radC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 728
# Identity: 517/728 (71.0%)
# Similarity: 517/728 (71.0%)
# Gaps: 61/728 ( 8.4%)
# Score: 1736.0
#
#
#=======================================
BSNT_04070___ 1 TTGGTCATAC---ACGATCTGCC-AT-----TAAAACTCAAAGATTTCCC 41
.|||||||.| |||||.|.|| || ||||.| |||||||
BPUM_2444___r 1 GTGGTCATCCTGAACGATTTCCCTATGCTGCTAAAGC------ATTTCCC 44
BSNT_04070___ 42 AATCA--AAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGGAGCCGAGAA 89
||| |.|||||.||.||||||||..|..|.|||..||| |||.||.|
BPUM_2444___r 45 --TCATGATGAAAAACCGAGAGAACGTTTTATTAAATACGG-GCCCAGCA 91
BSNT_04070___ 90 CTTAG-CGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAA 138
.||.| |.||||||||||||.|.||.||..|..|..|.|||||.||.|||
BPUM_2444___r 92 GTTTGTCAAATCATGAACTTGTTGCGATCCTTCTAAGAACAGGCACAAAA 141
BSNT_04070___ 139 CACGAATCTGT--------TTTGGACCTGTCAAACCGGCTGCTGCGCTCA 180
.|.|||||.|| ||| ||| ||| |.||.||||...||
BPUM_2444___r 142 AAAGAATCCGTTCTCCAAATTT----CTG-CAA---GACTTCTGCAAACA 183
BSNT_04070___ 181 TTTGACGGGCTGCGC-CTGCTCAAG-GAAGCATCGGTTGAAGAGCTGTCG 228
||.|..||.||.||| ||| .||| |||||..|..|||||||..|||||
BPUM_2444___r 184 TTCGGTGGTCTTCGCTCTG--TAAGAGAAGCCACAATTGAAGAAATGTCG 231
BSNT_04070___ 229 AGCATCCCGGGAATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGT 278
|..||.|..|||.|.||.|.||..||.||.|||....|..|.|||||..|
BPUM_2444___r 232 AAGATTCGAGGAGTTGGAAAGGCGAAGGCAATTTCTCTTTTAGCTGCTTT 281
BSNT_04070___ 279 TGAGCTTGGAAGCCGGATT----CAT-AAATTAGCCAACGAAGAAC---- 319
.||.||.||.| |..|||| ||| ||| |.|||.|.|||
BPUM_2444___r 282 AGAACTCGGCA-CTAGATTACACCATCAAA-----CGACGGATAACCGCT 325
BSNT_04070___ 320 ATTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGAT 369
|| ||.||.|||.|.||.||||||||.||.||..||||.|||||.|||
BPUM_2444___r 326 AT---GTGATCCGCACACCAGAAGACGGAGCGAACTTTGTGATGGAAGAT 372
BSNT_04070___ 370 ATGCGCTTTTTAACCCAGGAGCATTTTGTCTGTTTATACTTAAATACAAA 419
|||.|.|||||.||.|||||..||||.||.|||.|.||..|.||||||||
BPUM_2444___r 373 ATGAGATTTTTGACACAGGAAAATTTCGTTTGTCTGTATCTCAATACAAA 422
BSNT_04070___ 420 AAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCAT 469
|||||||||..|.|||||||..|||||.|||||.||||||||||||||||
BPUM_2444___r 423 AAATCAAGTTCTTCATAAACATACCGTGTTTATTGGAAGCCTGAATTCAT 472
BSNT_04070___ 470 CTATTGTCCACCCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCC 519
|.||.||.||||||||.||..|.||.|||||.||.|||||.||.||.|||
BPUM_2444___r 473 CGATCGTTCACCCGCGTGAAATTTTCAAAGAGGCCTTTAAGCGTTCGGCC 522
BSNT_04070___ 520 GCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCCGACGCCGAG 569
|||||.|||||.|||||.||.||.|||||.|||||||||||||||||.||
BPUM_2444___r 523 GCTTCATTTATATGTGTGCACAACCATCCATCTGGAGATCCGACGCCCAG 572
BSNT_04070___ 570 CAGGGAAGATATTGAAGTGACA-AGACGGCTGTTTGAATGCGGAAACCTG 618
|||||||||||||||||||||| || ||.||.||||||||.|||||.|||
BPUM_2444___r 573 CAGGGAAGATATTGAAGTGACACAG-CGACTTTTTGAATGTGGAAAGCTG 621
BSNT_04070___ 619 ATTGGCATCGAGCTGCTTGACCATTTGGTGATCGGGGATAAAAAATTTGT 668
|||||.||..||||||||||.|||.|.||.||.||.|||.||||||||||
BPUM_2444___r 622 ATTGGAATACAGCTGCTTGATCATCTAGTCATAGGTGATCAAAAATTTGT 671
BSNT_04070___ 669 GAGTTTAAAGGAAAAAGGATATTTGTAA 696
||||||.|||||||||||.|||||||||
BPUM_2444___r 672 GAGTTTGAAGGAAAAAGGGTATTTGTAA 699
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