Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04060 and BPUM_2436

See Amino acid alignment / Visit BSNT_04060 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:34
# Commandline: needle
#    -asequence dna-align/BSNT_04060___rplU.1.24716.seq
#    -bsequence dna-align/BPUM_2436___rplU.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04060___rplU-BPUM_2436___rplU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04060___rplU-BPUM_2436___rplU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04060___rplU
# 2: BPUM_2436___rplU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 309
# Identity:     266/309 (86.1%)
# Similarity:   266/309 (86.1%)
# Gaps:           0/309 ( 0.0%)
# Score: 1158.0
# 
#
#=======================================

BSNT_04060___      1 ATGTACGCAATCATTAAAACAGGCGGTAAACAAATCAAAGTTGAAGAAGG     50
                     |||||||||||.||..||||.||.|||||||||.|.||||||||||||||
BPUM_2436___r      1 ATGTACGCAATTATCGAAACTGGTGGTAAACAAGTAAAAGTTGAAGAAGG     50

BSNT_04060___     51 CCAAACTGTTTACATCGAAAAACTTGCTGCTGAAGCAGGTGAAACAGTTA    100
                     .|||||||||||.||.||||||||.|||||||||||||||||||||||.|
BPUM_2436___r     51 TCAAACTGTTTATATTGAAAAACTAGCTGCTGAAGCAGGTGAAACAGTAA    100

BSNT_04060___    101 CTTTTGAAGACGTTTTGTTTGTTGGCGGAGACAACGTGAAAGTCGGCAAC    150
                     ||||||||.||||.||||||||.||||||||||..||||||||.||.|||
BPUM_2436___r    101 CTTTTGAAAACGTATTGTTTGTCGGCGGAGACACTGTGAAAGTGGGTAAC    150

BSNT_04060___    151 CCTACAGTTGAAGGCGCAACAGTAACGGCTAAAGTTGAAAAACAAGGCCG    200
                     |||.||||||..||.||||||||||||||||||||||||||||||||.||
BPUM_2436___r    151 CCTTCAGTTGCTGGAGCAACAGTAACGGCTAAAGTTGAAAAACAAGGTCG    200

BSNT_04060___    201 CGCGAAAAAAATCACTGTTTTCAGATACAAACCAAAGAAAAACGTTCATA    250
                     ||..||.|||||.|||||.||||..||||||||.|||||||||...||.|
BPUM_2436___r    201 CGGTAAGAAAATTACTGTGTTCAAGTACAAACCGAAGAAAAACAACCACA    250

BSNT_04060___    251 AAAAACAAGGTCATCGTCAGCCTTACACTAAAGTGACGATCGAAAAAATC    300
                     |.|||||||||||||||||.||||||||||||||....||||||||||||
BPUM_2436___r    251 AGAAACAAGGTCATCGTCAACCTTACACTAAAGTTGTTATCGAAAAAATC    300

BSNT_04060___    301 AACGCGTAA    309
                     |||||.|||
BPUM_2436___r    301 AACGCTTAA    309


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