Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04058 and BPUM_2434

See Amino acid alignment / Visit BSNT_04058 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:34
# Commandline: needle
#    -asequence dna-align/BSNT_04058___rpmA.1.24716.seq
#    -bsequence dna-align/BPUM_2434___rpmA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04058___rpmA-BPUM_2434___rpmA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04058___rpmA-BPUM_2434___rpmA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04058___rpmA
# 2: BPUM_2434___rpmA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 285
# Identity:     258/285 (90.5%)
# Similarity:   258/285 (90.5%)
# Gaps:           0/285 ( 0.0%)
# Score: 1182.0
# 
#
#=======================================

BSNT_04058___      1 ATGCTTAGATTAGATCTTCAGTTTTTCGCTTCTAAAAAAGGAGTAGGTTC     50
                     ||||||||||||||||||||.||||||||.|||||||||||.||||||||
BPUM_2434___r      1 ATGCTTAGATTAGATCTTCAATTTTTCGCATCTAAAAAAGGGGTAGGTTC     50

BSNT_04058___     51 TACAAAGAACGGACGTGACTCTGAGGCTAAACGTTTAGGTGCTAAACGTG    100
                     |||||||||||||||||||||||||.|||||||||||||.||||||||||
BPUM_2434___r     51 TACAAAGAACGGACGTGACTCTGAGTCTAAACGTTTAGGCGCTAAACGTG    100

BSNT_04058___    101 CTGACGGTCAATTCGTAACAGGCGGTTCTATCCTTTACCGTCAACGCGGA    150
                     ||||.||||||||||||||.||.||||||||||||||.||||||||.|||
BPUM_2434___r    101 CTGATGGTCAATTCGTAACTGGTGGTTCTATCCTTTATCGTCAACGTGGA    150

BSNT_04058___    151 ACAAAAATTTACCCAGGTGAAAACGTGGGCCGCGGCGGAGATGACACTCT    200
                     ||.|||||.||.||||||||||||||.||.|||||.||.||.||||||||
BPUM_2434___r    151 ACGAAAATCTATCCAGGTGAAAACGTTGGGCGCGGAGGCGACGACACTCT    200

BSNT_04058___    201 ATTTGCGAAAATCGACGGAACTGTTAAATTCGAACGTTTCGGCCGTGACC    250
                     .||.||.||||||||||||||.||||||||||||||||||||.|||||||
BPUM_2434___r    201 TTTCGCTAAAATCGACGGAACAGTTAAATTCGAACGTTTCGGTCGTGACC    250

BSNT_04058___    251 GCAAAAAAGTGAGCGTATATCCTGTAGCTCAATAA    285
                     |.||||||||||||||||||||||..||.||||||
BPUM_2434___r    251 GTAAAAAAGTGAGCGTATATCCTGCGGCACAATAA    285


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