Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04051 and BPUM_2429
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:33
# Commandline: needle
# -asequence dna-align/BSNT_04051___yrxA.1.24716.seq
# -bsequence dna-align/BPUM_2429___yrxA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04051___yrxA-BPUM_2429___yrxA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04051___yrxA-BPUM_2429___yrxA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04051___yrxA
# 2: BPUM_2429___yrxA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 579
# Identity: 383/579 (66.1%)
# Similarity: 383/579 (66.1%)
# Gaps: 72/579 (12.4%)
# Score: 1165.0
#
#
#=======================================
BSNT_04051___ 1 -TTGACCGAAGA-ATTAAAGCTAATGGGCGCCAACAGGCGTGACCAGC-- 46
|.||.| |||| |..||| ||.||.|||||..|.||..|..|| ||
BPUM_2429___y 1 GTGGAAC-AAGAGAGGAAA-CTCATTGGCGCAGAAAGAAGAAAC--GCCA 46
BSNT_04051___ 47 TTCTTCTGTGGCTGAAGGAATCTAAAT-CACCGCTGACAGGAGGAGAAC- 94
||.|...|||||||||||||.| |.|| |||||||.||.||| |.|
BPUM_2429___y 47 TTTTAGAGTGGCTGAAGGAAAC-AGATACACCGCTCACCGGA----AGCT 91
BSNT_04051___ 95 ---TCGCAAAAAAAGCGAACGTCTCAAGACAGGTTATTGTACAGGATATA 141
|.||.|||||.|||...|||||..||||.||.||||||||.|||||.
BPUM_2429___y 92 TTTTGGCTAAAAAGGCGGCTGTCTCTCGACAAGTCATTGTACAAGATATC 141
BSNT_04051___ 142 TCGCTCTTGAAAGCGAAAAATGTACCGATTATCGCCACAAGCCAAGGATA 191
||.||.||||||||.|||||.|.|||.|||||.||||||||.|||||.||
BPUM_2429___y 142 TCACTATTGAAAGCAAAAAACGAACCCATTATTGCCACAAGTCAAGGCTA 191
BSNT_04051___ 192 TGTATACATGG-ATGCAGCCGCTCAGCA-GCACCAGCAGGCAGAAAG--- 236
|||.||.|||| || ||||||| ||.||||.| |||.||
BPUM_2429___y 192 TGTGTATATGGCAT-------CTCAGCATGCGCCAGAA---AGAGAGATT 231
BSNT_04051___ 237 -----AATCATAGCATGTCTGCACGGTCCTGAACGGACAGAAGAGGAACT 281
||||||.||.||...|||.|.|||||..||.||||||||||||||
BPUM_2429___y 232 GAACAAATCATCGCCTGCAAGCATGATCCTGTTCGAACAGAAGAGGAACT 281
BSNT_04051___ 282 GCAGCTCATCGTCGACGAAGGCGTTACAGTAAAAGACGTAAAAATCGAGC 331
|....|.||.||.||....||.||.||.||||||||.||.|..||.||||
BPUM_2429___y 282 GACTTTAATTGTAGATTTTGGGGTGACGGTAAAAGATGTCATGATAGAGC 331
BSNT_04051___ 332 ATCCCGTATACGGAGATTTAACTGCAGCCATCCAAGTAGGCACCCGGAAA 381
|.||.||.|||||.||..||||.||..|.||.|..||..|||||||.||.
BPUM_2429___y 332 ACCCTGTTTACGGTGAACTAACGGCCTCAATTCGTGTTAGCACCCGCAAG 381
BSNT_04051___ 382 GAAGTTAGC-CAT----TTCATCAAAAAAATCAATTCT---ACGAATGCT 423
.||| |||| .|| ||||||| ||.|||| |||...||.
BPUM_2429___y 382 CAAG-TAGCTGATTTCGTTCATCA-------CATTTCTAACACGGGCGCC 423
BSNT_04051___ 424 GCCTACTTATCACAGCTGACCGACGGCGTGCACCTGCATACA-------C 466
.|||||||.|||.|.||.||.||.||||||||..|.|||||| |
BPUM_2429___y 424 TCCTACTTGTCAGAACTAACAGATGGCGTGCATTTACATACACTTACTTC 473
BSNT_04051___ 467 TGACAGCACCTGATGAACATCGCA--TCGATCAAGCTTGCCAAGCCCTCG 514
|.|||| |.||.| ||| |.||.|||||...||||||.||||
BPUM_2429___y 474 TTACAG-------TCAAAA--GCAGCTTGACCAAGCCATCCAAGCGCTCG 514
BSNT_04051___ 515 AAGAAGCCGGCATTTTAATTAAAGACTAA 543
|.||.||.|||.|||||||||||||||||
BPUM_2429___y 515 ATGATGCTGGCTTTTTAATTAAAGACTAA 543
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