Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04048 and BPUM_2427
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:33
# Commandline: needle
# -asequence dna-align/BSNT_04048___nadB.1.24716.seq
# -bsequence dna-align/BPUM_2427___nadB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04048___nadB-BPUM_2427___nadB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04048___nadB-BPUM_2427___nadB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04048___nadB
# 2: BPUM_2427___nadB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1826
# Identity: 999/1826 (54.7%)
# Similarity: 999/1826 (54.7%)
# Gaps: 481/1826 (26.3%)
# Score: 2379.0
#
#
#=======================================
BSNT_04048___ 1 ---ATGTC------TAAAAAGACGATTGCAGTCATCGGTTCAGGGGCGGC 41
.|||| ||||||.|..||| ||..|.||.|||||....||
BPUM_2427___n 1 ATGGTGTCATCAATTAAAAAAATCATT---GTGGTGGGATCAGGCATTGC 47
BSNT_04048___ 42 GGCACTTTCCTTAGCTGC----AGCTTTCCCGCCCTCATACGAAGTGACT 87
.||||||||||| ||| |.|.||.|.||...| |..|||||.|..
BPUM_2427___n 48 AGCACTTTCCTT---TGCAAAGACCATTTCAGCAAGC-TGTGAAGTCATC 93
BSNT_04048___ 88 GTTATCACAAAAAAAAGCGTCAAAAACAGCAATTCT-GTCTA-------- 128
.|.||.||||||||| |||||.| .||||
BPUM_2427___n 94 ATGATGACAAAAAAA--------------CAATTTTCCTCTAGTAATTCC 129
BSNT_04048___ 129 -----TGCACAAGGCGGGATTGCTGCGGCC---TATGCAAAAGATGACTC 170
|||||||||.||.||.||||||||| |.||||.|.||| ||
BPUM_2427___n 130 ATGCTTGCACAAGGAGGAATCGCTGCGGCCTTTTCTGCACAGGAT---TC 176
BSNT_04048___ 171 GATTGA--AGCCCATCTGGAGGATACGTTATACGCAGGGTGCGGCCATAA 218
..|||| || |||.|..|.||.||.|||...||.||.||.|..||.||
BPUM_2427___n 177 TGTTGATCAG--CATGTACAAGACACATTAGCTGCCGGCTGTGATCACAA 224
BSNT_04048___ 219 TAATCTAGCTATTGCAGCAGA-CGTATTACATGA------------TGGA 255
..|| .||| .||..||||.|| ||||
BPUM_2427___n 225 CGAT-------------GAGAGGGTGGTACAAGAGATCGTCAGTCTTGGA 261
BSNT_04048___ 256 AAA-ATGATGGTTCAAAGCCTATTGGAG--CGT-------GGATTTCCAT 295
||| || ||||| .|||| || ||| ||.|..||||
BPUM_2427___n 262 AAACAT-ATGGT--GAAGC-------AGCTCGTAGAAGAAGGCTGCCCAT 301
BSNT_04048___ 296 TCGA-------------------CCGCAATGAACGAGGCGGTGTTTGTCT 326
|.|| ||||||| |
BPUM_2427___n 302 TTGATCAAACAGAGAATGGCATGCCGCAAT-------------------T 332
BSNT_04048___ 327 TGGAAGAGAAGGGGC-----CCACTCATACAACCGCATATTTCATGCTGG 371
.||.|.||||||||| |.|||||| |||||.||.|||||.||
BPUM_2427___n 333 AGGTAAAGAAGGGGCACATACGACTCAT-----CGCATTTTGCATGCAGG 377
BSNT_04048___ 372 CGGAGACGCAACAGG---------CGGGCTGCTTATCGATTA-------- 404
.||||||..|||.|| ||.||.| ||| |||
BPUM_2427___n 378 AGGAGACCAAACTGGCAAAACCCTCGTGCAG--TAT---TTAAAAAATCA 422
BSNT_04048___ 405 --TTTGCTCAAACGGATCAACAGCAAAATCAAGTTAATCGAGAATGAAAT 452
||.||||| ||.|.||| ||.|| |.|||| ||
BPUM_2427___n 423 GCTTGGCTCA-------------CATATTCA--TTTAT-GTGAAT---AT 453
BSNT_04048___ 453 GGCAGCA-------GATTTGCTTATAGAGGACGGACGATGTATCGGCGTC 495
||.|| |||.|.||..|..|.||.|||...||.||.||.||.
BPUM_2427___n 454 --CACCATGTCATTGATCTACTCGTTCATGAAGGAATCTGCATAGGAGTG 501
BSNT_04048___ 496 ATGACAAAAGAC-AGCAAAGGGCGGCTCAAGGTA------AGGCACGCAG 538
.|....|||||| || |||||.| |.||| |.|..|||||
BPUM_2427___n 502 GTCTGGAAAGACGAG-AAAGGAC------ACGTACATACCATGACCGCAG 544
BSNT_04048___ 539 ACGAAGTTGTGCTGGCTG----------CCGGCGGCTGTGGAAACCTGTT 578
| ||||| || |.||||||||.||....||.||
BPUM_2427___n 545 A--------TGCTG--TGGTTTTATCCACGGGCGGCTGCGGCTCGCTATT 584
BSNT_04048___ 579 TCTTCACCATACG------AATGATCTCACTGTCACAGGTGACGGTCTTT 622
| .|.||| |||||.|...||||.|||||.||.||.||..
BPUM_2427___n 585 T------GAAACGAACACAAATGACCCTTCTGTAACAGGAGATGGGCTGA 628
BSNT_04048___ 623 CTCTGGCTTACCGGGCCGGGGCGGAATTAACGGATTTGGAGTTTACTCAG 672
...|||||||.||.||||||||..|||||...||..|.||.|||..|||.
BPUM_2427___n 629 TAATGGCTTATCGAGCCGGGGCACAATTAGTTGACCTCGAATTTGTTCAA 678
BSNT_04048___ 673 TTTCACCCGACACTGCTTG--------TGAAAAATGGTGTTTCCTACGGG 714
||.||.||.||.|| |||| ||.|||| |..|| |||.
BPUM_2427___n 679 TTCCATCCCACTCT-CTTGACGATCGCTGGAAAA-GCAGT------CGGT 720
BSNT_04048___ 715 CTTGTTTCAGAAGCTGTCAGAGGGGAAGGCGGATGTTTAGTAGACGAAAA 764
||.||.|||||.||||||.||||.|||||.|..|.|||||.|||.||||.
BPUM_2427___n 721 CTCGTGTCAGAGGCTGTCCGAGGAGAAGGAGCCTATTTAGAAGATGAAAC 770
BSNT_04048___ 765 CGGCCGCAGGATTATGGCTGAACGGCAT----CCCTTAGGTGACCTGGCT 810
.|||.|.|||||.| ||||.||||| ||...||||||..|.||.
BPUM_2427___n 771 AGGCAGGAGGATCA----TGAAAGGCATTCACCCACAAGGTGATTTAGCG 816
BSNT_04048___ 811 CCAAGAGATATTGTCTCACGGGTTA---TTCACGA--AGAAAT---GGCA 852
||.||||||||.|||||..|.|.|| ||||.|| ||.||| |.||
BPUM_2427___n 817 CCTAGAGATATCGTCTCTAGAGCTATCTTTCATGAGCAGCAATTTGGTCA 866
BSNT_04048___ 853 AAAGGAAATCGCGTTTAT----ATAGACTTCAGTGCG---------ATTT 889
..||| |.||| ||| ||| ||| ||||
BPUM_2427___n 867 -----TGATC---TGTATCTCAATA----TCA--GCGAAATTCCACATTT 902
BSNT_04048___ 890 CTGATTTTGAAACGCGTTTCCCTACCATCACCGCTATTTGTGAAAAAGCA 939
||.|.|| |||||.||..||||..|.||.||.|||||....||.
BPUM_2427___n 903 CTCAGTT-------CGTTTTCCAGCCATTGCTGCAATGTGTGAGCGGGCT 945
BSNT_04048___ 940 GGGGTTGATAT-CCACAGCGGAAAAATTCCTGTTGCTCCGGGAATGCATT 988
||.||.||||| .|| |||||.|...|.||.|||.|.||.||.|||||||
BPUM_2427___n 946 GGTGTCGATATGGCA-AGCGGCAGGCTCCCAGTTTCCCCAGGTATGCATT 994
BSNT_04048___ 989 TCTTAATGGGAGGTGTTTCAGTTAATCGCTGGGGAGAAACGACAGTGCCG 1038
|.||||||||.||..|.|..||.|||...|..||||||||||||||.||.
BPUM_2427___n 995 TTTTAATGGGGGGAATCTGCGTGAATGAATATGGAGAAACGACAGTTCCA 1044
BSNT_04048___ 1039 GGGCTTTATGCGATTGGCGAGACAGCATGCT----CCGGTTTACATGGAG 1084
...||||..||.||.||.|| ||| |||| |.||.||||||||||
BPUM_2427___n 1045 TCTCTTTTCGCTATCGGAGA---AGC-TGCTTGTACAGGCTTACATGGAG 1090
BSNT_04048___ 1085 CAAACCGGCTTGCAAGCAATTCTTTATTGGAAGCGCTGGTATTTGGAA-- 1132
|.|||||..|.||.||.||||||.|.|||||||..||.||.||.||||
BPUM_2427___n 1091 CGAACCGATTGGCGAGTAATTCTCTCTTGGAAGGTCTCGTTTTAGGAAAC 1140
BSNT_04048___ 1133 AAAG-GGCAGCAGAGCAT------ATTATCCAAAAACCGGTTTATAACAG 1175
|||| |||| |.|||.|| |||..|.|||| ||...|.||||
BPUM_2427___n 1141 AAAGCGGCA-CGGAGAATTGAACAATTCCCTAAAA---GGAAAAAAACA- 1185
BSNT_04048___ 1176 GCAATAT-----------CAATCAGGGCTAGAAACCAGTGTCGTCTACGA 1214
|| ||||| |.|||| ||| |.|||
BPUM_2427___n 1186 -----ATCCCCTCTTCCACAATC----CAAGAA---AGT-TGGTC----- 1217
BSNT_04048___ 1215 GGTGCCGGATAT---AGAG-----GTGTATGAACTGCAAAGCAAAATGAC 1256
.|||||.||.|| |||| || |||.| |||.|.|..|||||
BPUM_2427___n 1218 CGTGCCAGAGATTTCAGAGAAACAGT---TGAGC--CAATGGATGATGAC 1262
BSNT_04048___ 1257 --AAGCCACATGTCTATTTTGCGGGAACAAAGCAGTTTGATTGAGCTTAG 1304
|.|||.|| |||.|..|.| ||.||| .||.|||.|.
BPUM_2427___n 1263 ATATGCCGCA-----ATTGTAAGAG-ACGAAG--------ATGGGCTAAA 1298
BSNT_04048___ 1305 CATCTGGCTTCA-----TAC-GC---TGCCTTTTCAGGAAGTGAATGTGA 1345
.|.||.|||||| ||| || |.||||.||||.||.|.|||||||
BPUM_2427___n 1299 GACCTTGCTTCAATCATTACTGCAAGTCCCTTATCAGCAAATAAATGTGA 1348
BSNT_04048___ 1346 AGGATATCACAATTCGGCAGATGGAGCTTTCTCATCTATGGCAA--ACTG 1393
|.||||||||||.|.|.||.||.|| ||..| |||| |.||
BPUM_2427___n 1349 AAGATATCACAAATGGACAAATCGA--------ATTAA--GCAATCAATG 1388
BSNT_04048___ 1394 CA---AAGCTGA--TGACGTTT----TCTGCGCTT--TTGCGGGAGGAAA 1432
|| .||| || ||.|.|.| ||||| ||| || ||....||||
BPUM_2427___n 1389 CACATTAGC-GATTTGTCTTGTGAGATCTGC-CTTACTT-CGAACAGAAA 1435
BSNT_04048___ 1433 GCAGAGGGGCTCACTTCCGCACCGATTTTCCTCATGCTGAGGTGA-GC-- 1479
|||||||.|.|||.|..||....||||.|||..|| |.|| .||| ||
BPUM_2427___n 1436 GCAGAGGAGGTCATTATCGAGTGGATTATCCAAAT-CGGA-ATGATGCAT 1483
BSNT_04048___ 1480 --TGGCAAGGAAGACAAATTGTCCATACAAAAAAAGGAACGA-----AGA 1522
||||..||.|..|||||||||||| .||||||| |.| |.|
BPUM_2427___n 1484 TATGGCGTGGCATGCAAATTGTCCAT---GAAAAAGG--CCACATTCATA 1528
BSNT_04048___ 1523 TCAGAAAAAACGAGGGGATTTGGAAC--AATGAATCATTTACAGCTGAAA 1570
|.|..|||||.||..||| |.||..| ||||.|.|.|||||||.|.|
BPUM_2427___n 1529 TAATGAAAAATGAAAGGA-TCGGTGCCAAATGGAACGTTTACAGTTAA-- 1575
BSNT_04048___ 1571 AAATTACTGAATCACTTTTTTCTTGA 1596
BPUM_2427___n 1575 -------------------------- 1575
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