Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04045 and BPUM_2425

See Amino acid alignment / Visit BSNT_04045 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:33
# Commandline: needle
#    -asequence dna-align/BSNT_04045___nadA.1.24716.seq
#    -bsequence dna-align/BPUM_2425___nadA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04045___nadA-BPUM_2425___nadA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04045___nadA-BPUM_2425___nadA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04045___nadA
# 2: BPUM_2425___nadA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1165
# Identity:     803/1165 (68.9%)
# Similarity:   803/1165 (68.9%)
# Gaps:         113/1165 ( 9.7%)
# Score: 2680.0
# 
#
#=======================================

BSNT_04045___      1 ATGTCAATTCTTGATGTGAT--CAAACAATCGAAT---GATATGATGCCC     45
                     ||||||.|.||||||||..|  |||||.|.|  ||   |..||||||||.
BPUM_2425___n      1 ATGTCACTGCTTGATGTACTGGCAAACCAAC--ATGCAGCCATGATGCCA     48

BSNT_04045___     46 GAAAGTTATAAA----GAACTATCGAGAAAGGATATGGAAACGCGCGTTG     91
                     |||...||||||    |..||.|.|    |.||.|||||...|||.||.|
BPUM_2425___n     49 GAAGAATATAAACACCGCTCTGTTG----ATGAGATGGAGCAGCGTGTGG     94

BSNT_04045___     92 CCGCCATTAAA--------------AAAAAGTTCGGCAGCAGGCTCTTTA    127
                     ..|.|||||||              ||||              ||.||||
BPUM_2425___n     95 TAGACATTAAACGTGCCTTTGGATCAAAA--------------CTTTTTA    130

BSNT_04045___    128 TACCAGGCCATCATTATCAAAAGGATGAAGTGATACAATTTGCTGACCAA    177
                     |||||||.|||||||||||||||||.|||||.||.|||||.||.||...|
BPUM_2425___n    131 TACCAGGGCATCATTATCAAAAGGACGAAGTCATCCAATTCGCAGATGCA    180

BSNT_04045___    178 ACAGGCGACTCCCTGCAATTGGCCCAAGTAGCGGAAAAAAACAAAGAAGC    227
                     |||||.||.||..||||..|.||.|||.||||.|.|.|.|||||.|||||
BPUM_2425___n    181 ACAGGAGATTCATTGCAGCTCGCACAAATAGCTGCAGACAACAAGGAAGC    230

BSNT_04045___    228 GGATTATATCGTATTTTGCGGCGTTCACTTTATGGCAGAAACCGCCGATA    277
                     |||.||.||.||.||.|||||.||||||||.|||||.|||||.||.||||
BPUM_2425___n    231 GGAGTACATTGTGTTCTGCGGTGTTCACTTCATGGCTGAAACGGCAGATA    280

BSNT_04045___    278 TGCTGACAAGCGAGCGGCAAACGGTCGTCCTGCCAGATATGAGAGCAGGA    327
                     |||||.|||...||...||||..||..|..|||||||||||||||||||.
BPUM_2425___n    281 TGCTGTCAAAAAAGAATCAAAAAGTTCTTTTGCCAGATATGAGAGCAGGC    330

BSNT_04045___    328 TGTTCTATGGCTGACATGGCTGACATGCAGCAGACCAATAGGGCATGGAA    377
                     |||||.|||||.||.|||||..|||||.|.||.||..||.|.||||||.|
BPUM_2425___n    331 TGTTCAATGGCAGATATGGCGAACATGAAACAAACGGATCGAGCATGGGA    380

BSNT_04045___    378 GAAGCTTCAGC--ATATATTTGGAGATACGATCATACCTTTAACTTATGT    425
                     |.||| ||| |  ||.|.|||||.||.||.||..|.||..|.||.|||||
BPUM_2425___n    381 GCAGC-TCA-CTGATCTGTTTGGGGAGACAATTCTTCCACTTACGTATGT    428

BSNT_04045___    426 GAACTCCACTGCGGAGATCAAGGCATTCGTCGGAAAACATGGCGGAGCAA    475
                     .|||||.||.||.||.||.||.|||||.||||||||.|||||.||.||.|
BPUM_2425___n    429 CAACTCAACAGCTGATATTAAAGCATTTGTCGGAAAGCATGGTGGGGCCA    478

BSNT_04045___    476 CTGTGACTTCTTCAAATGCGAAAAAAGTGCTTGAATGGGCGTTTACACAG    525
                     |||||||.||.|||||.||.||||||.||||.||.||||||.|.|||||.
BPUM_2425___n    479 CTGTGACATCATCAAACGCAAAAAAAATGCTGGAGTGGGCGCTCACACAA    528

BSNT_04045___    526 AAAAAAAGAATTTTATTTTTGCCTGATCAGCATTTAGGGAGAAATACGGC    575
                     |||.||.|.|||.|.|||.|.||||||||||||||.|||.|.|||||.||
BPUM_2425___n    529 AAAGAACGGATTCTGTTTCTCCCTGATCAGCATTTGGGGCGTAATACAGC    578

BSNT_04045___    576 TTATGATCTGGGCATTGCGCTCGAAGATATGGCTGTGTGGGACCCGATAA    625
                     .|.||||.|.||||||.|.||.|||||.||||||||||||||.|..|||.
BPUM_2425___n    579 CTTTGATTTAGGCATTTCACTTGAAGAAATGGCTGTGTGGGATCAAATAG    628

BSNT_04045___    626 AAGATGAA---TTAGTAGCTGAATCCGGGCA-----------TACGAATG    661
                     ||||  ||   ||| |..|.||  ||.|.||           ||.||   
BPUM_2425___n    629 AAGA--AAGGCTTA-TCACCGA--CCAGCCACTTTCCCGCATTAAGA---    670

BSNT_04045___    662 TGAAAGTGATTTTGTGGAAAGGGCATTGCTCTGTTCACGAGAAATTCAC-    710
                           |||||||.||||||||.||.||||||||.||.||||||||.|| 
BPUM_2425___n    671 ------TGATTTTATGGAAAGGCCACTGCTCTGTCCATGAGAAATTTACG    714

BSNT_04045___    711 ---CACTAAAAATATCCTTGATATGAGAGAGCGAGACCCCGACATTCAGA    757
                        |    ..|||||....||.|.||||.|..||||||..||||||||.|
BPUM_2425___n    715 GTGC----GGAATATTGAAGAAACGAGAAAAAGAGACCGTGACATTCAAA    760

BSNT_04045___    758 TCATTGTGCACCCGGAATGTTCACACGAAGTCGTGACACTAAGC----GA    803
                     |..||||.||.||.||.||..|.||.||||||||.||    .||    ||
BPUM_2425___n    761 TTCTTGTCCATCCAGAGTGCACGCATGAAGTCGTCAC----GGCTTCTGA    806

BSNT_04045___    804 TGATAACGGATCAACGAAATATATTATCGACACAATCAACCAGGCTCCGG    853
                     |..|..|||.||.|||||||.||||||.||.||||||||..|.||.||.|
BPUM_2425___n    807 TCTTGCCGGTTCCACGAAATTTATTATTGATACAATCAAAGAAGCACCAG    856

BSNT_04045___    854 CGGGAAGCAAGTGGGCAATCGGGACAGAAATGAATCTTGTTC-AGCGGAT    902
                     |.||||||||||||||.||.||.|||||.|||||| |||.|| |||||||
BPUM_2425___n    857 CAGGAAGCAAGTGGGCGATTGGAACAGAGATGAAT-TTGGTCAAGCGGAT    905

BSNT_04045___    903 CATTCACGAGCATCCAGATAAACAAATCGAATCACTCAACCCTGACATGT    952
                     |||..|..|||||||||||||||||||||||||.|||||.||.||.||||
BPUM_2425___n    906 CATCAATCAGCATCCAGATAAACAAATCGAATCCCTCAATCCGGATATGT    955

BSNT_04045___    953 GCCCTTGCCTGACAATGAACCGAATTGATTTGCCGCATTTGTTGTGGTCG   1002
                     |.||.||..||||.|||||.||.||.|||.|.||.||||||||.|||||.
BPUM_2425___n    956 GTCCATGTTTGACGATGAATCGGATCGATCTCCCTCATTTGTTATGGTCA   1005

BSNT_04045___   1003 CTGGAACAAATTGAAAAAGGAGAACC-TTCAGGCGTCA-TCAAGGTGCCA   1050
                     ||.||....|||||||||||.||.|| .|| ||..||| ||||   |.||
BPUM_2425___n   1006 CTTGAGAGCATTGAAAAAGGTGATCCGGTC-GGTTTCATTCAA---GTCA   1051

BSNT_04045___   1051 A--AAGCCA-TTCAGGAAGATGCACTCCTTGCCCTGAATCGAATGCT---   1094
                     |  |||.|| ..|| .|||||||..|.||.||.||||||..||||||   
BPUM_2425___n   1052 ATGAAGACACGACA-AAAGATGCTTTACTCGCACTGAATAAAATGCTCAT   1100

BSNT_04045___   1095 --TTCGATCACGTAG   1107
                       ||..||.|     
BPUM_2425___n   1101 CATTAAATAA-----   1110


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