Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04045 and BPUM_2425
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:33
# Commandline: needle
# -asequence dna-align/BSNT_04045___nadA.1.24716.seq
# -bsequence dna-align/BPUM_2425___nadA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04045___nadA-BPUM_2425___nadA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04045___nadA-BPUM_2425___nadA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04045___nadA
# 2: BPUM_2425___nadA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1165
# Identity: 803/1165 (68.9%)
# Similarity: 803/1165 (68.9%)
# Gaps: 113/1165 ( 9.7%)
# Score: 2680.0
#
#
#=======================================
BSNT_04045___ 1 ATGTCAATTCTTGATGTGAT--CAAACAATCGAAT---GATATGATGCCC 45
||||||.|.||||||||..| |||||.|.| || |..||||||||.
BPUM_2425___n 1 ATGTCACTGCTTGATGTACTGGCAAACCAAC--ATGCAGCCATGATGCCA 48
BSNT_04045___ 46 GAAAGTTATAAA----GAACTATCGAGAAAGGATATGGAAACGCGCGTTG 91
|||...|||||| |..||.|.| |.||.|||||...|||.||.|
BPUM_2425___n 49 GAAGAATATAAACACCGCTCTGTTG----ATGAGATGGAGCAGCGTGTGG 94
BSNT_04045___ 92 CCGCCATTAAA--------------AAAAAGTTCGGCAGCAGGCTCTTTA 127
..|.||||||| |||| ||.||||
BPUM_2425___n 95 TAGACATTAAACGTGCCTTTGGATCAAAA--------------CTTTTTA 130
BSNT_04045___ 128 TACCAGGCCATCATTATCAAAAGGATGAAGTGATACAATTTGCTGACCAA 177
|||||||.|||||||||||||||||.|||||.||.|||||.||.||...|
BPUM_2425___n 131 TACCAGGGCATCATTATCAAAAGGACGAAGTCATCCAATTCGCAGATGCA 180
BSNT_04045___ 178 ACAGGCGACTCCCTGCAATTGGCCCAAGTAGCGGAAAAAAACAAAGAAGC 227
|||||.||.||..||||..|.||.|||.||||.|.|.|.|||||.|||||
BPUM_2425___n 181 ACAGGAGATTCATTGCAGCTCGCACAAATAGCTGCAGACAACAAGGAAGC 230
BSNT_04045___ 228 GGATTATATCGTATTTTGCGGCGTTCACTTTATGGCAGAAACCGCCGATA 277
|||.||.||.||.||.|||||.||||||||.|||||.|||||.||.||||
BPUM_2425___n 231 GGAGTACATTGTGTTCTGCGGTGTTCACTTCATGGCTGAAACGGCAGATA 280
BSNT_04045___ 278 TGCTGACAAGCGAGCGGCAAACGGTCGTCCTGCCAGATATGAGAGCAGGA 327
|||||.|||...||...||||..||..|..|||||||||||||||||||.
BPUM_2425___n 281 TGCTGTCAAAAAAGAATCAAAAAGTTCTTTTGCCAGATATGAGAGCAGGC 330
BSNT_04045___ 328 TGTTCTATGGCTGACATGGCTGACATGCAGCAGACCAATAGGGCATGGAA 377
|||||.|||||.||.|||||..|||||.|.||.||..||.|.||||||.|
BPUM_2425___n 331 TGTTCAATGGCAGATATGGCGAACATGAAACAAACGGATCGAGCATGGGA 380
BSNT_04045___ 378 GAAGCTTCAGC--ATATATTTGGAGATACGATCATACCTTTAACTTATGT 425
|.||| ||| | ||.|.|||||.||.||.||..|.||..|.||.|||||
BPUM_2425___n 381 GCAGC-TCA-CTGATCTGTTTGGGGAGACAATTCTTCCACTTACGTATGT 428
BSNT_04045___ 426 GAACTCCACTGCGGAGATCAAGGCATTCGTCGGAAAACATGGCGGAGCAA 475
.|||||.||.||.||.||.||.|||||.||||||||.|||||.||.||.|
BPUM_2425___n 429 CAACTCAACAGCTGATATTAAAGCATTTGTCGGAAAGCATGGTGGGGCCA 478
BSNT_04045___ 476 CTGTGACTTCTTCAAATGCGAAAAAAGTGCTTGAATGGGCGTTTACACAG 525
|||||||.||.|||||.||.||||||.||||.||.||||||.|.|||||.
BPUM_2425___n 479 CTGTGACATCATCAAACGCAAAAAAAATGCTGGAGTGGGCGCTCACACAA 528
BSNT_04045___ 526 AAAAAAAGAATTTTATTTTTGCCTGATCAGCATTTAGGGAGAAATACGGC 575
|||.||.|.|||.|.|||.|.||||||||||||||.|||.|.|||||.||
BPUM_2425___n 529 AAAGAACGGATTCTGTTTCTCCCTGATCAGCATTTGGGGCGTAATACAGC 578
BSNT_04045___ 576 TTATGATCTGGGCATTGCGCTCGAAGATATGGCTGTGTGGGACCCGATAA 625
.|.||||.|.||||||.|.||.|||||.||||||||||||||.|..|||.
BPUM_2425___n 579 CTTTGATTTAGGCATTTCACTTGAAGAAATGGCTGTGTGGGATCAAATAG 628
BSNT_04045___ 626 AAGATGAA---TTAGTAGCTGAATCCGGGCA-----------TACGAATG 661
|||| || ||| |..|.|| ||.|.|| ||.||
BPUM_2425___n 629 AAGA--AAGGCTTA-TCACCGA--CCAGCCACTTTCCCGCATTAAGA--- 670
BSNT_04045___ 662 TGAAAGTGATTTTGTGGAAAGGGCATTGCTCTGTTCACGAGAAATTCAC- 710
|||||||.||||||||.||.||||||||.||.||||||||.||
BPUM_2425___n 671 ------TGATTTTATGGAAAGGCCACTGCTCTGTCCATGAGAAATTTACG 714
BSNT_04045___ 711 ---CACTAAAAATATCCTTGATATGAGAGAGCGAGACCCCGACATTCAGA 757
| ..|||||....||.|.||||.|..||||||..||||||||.|
BPUM_2425___n 715 GTGC----GGAATATTGAAGAAACGAGAAAAAGAGACCGTGACATTCAAA 760
BSNT_04045___ 758 TCATTGTGCACCCGGAATGTTCACACGAAGTCGTGACACTAAGC----GA 803
|..||||.||.||.||.||..|.||.||||||||.|| .|| ||
BPUM_2425___n 761 TTCTTGTCCATCCAGAGTGCACGCATGAAGTCGTCAC----GGCTTCTGA 806
BSNT_04045___ 804 TGATAACGGATCAACGAAATATATTATCGACACAATCAACCAGGCTCCGG 853
|..|..|||.||.|||||||.||||||.||.||||||||..|.||.||.|
BPUM_2425___n 807 TCTTGCCGGTTCCACGAAATTTATTATTGATACAATCAAAGAAGCACCAG 856
BSNT_04045___ 854 CGGGAAGCAAGTGGGCAATCGGGACAGAAATGAATCTTGTTC-AGCGGAT 902
|.||||||||||||||.||.||.|||||.|||||| |||.|| |||||||
BPUM_2425___n 857 CAGGAAGCAAGTGGGCGATTGGAACAGAGATGAAT-TTGGTCAAGCGGAT 905
BSNT_04045___ 903 CATTCACGAGCATCCAGATAAACAAATCGAATCACTCAACCCTGACATGT 952
|||..|..|||||||||||||||||||||||||.|||||.||.||.||||
BPUM_2425___n 906 CATCAATCAGCATCCAGATAAACAAATCGAATCCCTCAATCCGGATATGT 955
BSNT_04045___ 953 GCCCTTGCCTGACAATGAACCGAATTGATTTGCCGCATTTGTTGTGGTCG 1002
|.||.||..||||.|||||.||.||.|||.|.||.||||||||.|||||.
BPUM_2425___n 956 GTCCATGTTTGACGATGAATCGGATCGATCTCCCTCATTTGTTATGGTCA 1005
BSNT_04045___ 1003 CTGGAACAAATTGAAAAAGGAGAACC-TTCAGGCGTCA-TCAAGGTGCCA 1050
||.||....|||||||||||.||.|| .|| ||..||| |||| |.||
BPUM_2425___n 1006 CTTGAGAGCATTGAAAAAGGTGATCCGGTC-GGTTTCATTCAA---GTCA 1051
BSNT_04045___ 1051 A--AAGCCA-TTCAGGAAGATGCACTCCTTGCCCTGAATCGAATGCT--- 1094
| |||.|| ..|| .|||||||..|.||.||.||||||..||||||
BPUM_2425___n 1052 ATGAAGACACGACA-AAAGATGCTTTACTCGCACTGAATAAAATGCTCAT 1100
BSNT_04045___ 1095 --TTCGATCACGTAG 1107
||..||.|
BPUM_2425___n 1101 CATTAAATAA----- 1110
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