Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01495 and BPUM_2421
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:02
# Commandline: needle
# -asequence dna-align/BSNT_01495___thiC.1.24716.seq
# -bsequence dna-align/BPUM_2421___thiC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01495___thiC-BPUM_2421___thiC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01495___thiC-BPUM_2421___thiC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01495___thiC
# 2: BPUM_2421___thiC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1856
# Identity: 1300/1856 (70.0%)
# Similarity: 1300/1856 (70.0%)
# Gaps: 181/1856 ( 9.8%)
# Score: 4539.0
#
#
#=======================================
BSNT_01495___ 1 ATGCAA------AACAAT-TCAGTGCAGCAAGCCAACATTTC---CATTA 40
|||.|| ||.||| || ||||||..|| |.|||
BPUM_2421___t 1 ATGAAAGAAAAGAAAAATATC-----------CCAACAACTCAATCGTTA 39
BSNT_01495___ 41 -TGTCAAGTTTTTCAGGCAGCAAGAAGGTATACGTGGAGGGTTCTTCTTC 89
|.|||||.|||...||||||...|||||.||.|.|.|.||.||.....|
BPUM_2421___t 40 TTATCAAGCTTTGACGGCAGCCGAAAGGTGTATGAGAAAGGGTCAAGACC 89
BSNT_01495___ 90 GGACATCCAAGTGCCGATGAGGGAGAT---CCTATTGAGTCCGACG---A 133
.|||||...||||||.|..||.||.|| ||| .||| |
BPUM_2421___t 90 TGACATTTTAGTGCCAAAAAGAGAAATTGCCCT---------CACGCAAA 130
BSNT_01495___ 134 CGG-GATCGTTCGGCGAAG--AGG--------AAAACGCGCCTGTGCGTG 172
||| || ||.|| ||| ||||.|..||..|.||||
BPUM_2421___t 131 CGGTGA--------CGCAGGCAGGAATGATTCAAAATGAACCAATTCGTG 172
BSNT_01495___ 173 TCTATGATACAAGCGGACCGTATACGGACCCTGAAG--TAACCATTAAT- 219
|.||.|||||.||.||.||.||.||||| || || |..|||| ||
BPUM_2421___t 173 TGTACGATACGAGTGGTCCTTACACGGA---TG-AGCATGCCCAT--ATC 216
BSNT_01495___ 220 -AT---TCAAGAAGGATTAA---------AGCCGCTCCGCCAAAAATGGA 256
|| .|||.|.||.|||| |||.|| ||||.
BPUM_2421___t 217 GATGTGACAAAAGGGCTTAACCGTCTGAGAGCAGC----------ATGGG 256
BSNT_01495___ 257 TCACAGAGCGCGGTGACGTGGAAGAG-TATGAAGGTCGGGCTATAAAACC 305
||..|||..|.||.||....||| || ||||||||.||...|.|||||||
BPUM_2421___t 257 TCGAAGAAAGGGGAGATACAGAA-AGCTATGAAGGGCGCCATGTAAAACC 305
BSNT_01495___ 306 AGAAGATAACGGTTA------TAAAAA-----------AGCAAATCCAAA 338
.|||||||||||.|| ||.||| ||||.||.||.|
BPUM_2421___t 306 TGAAGATAACGGCTATCGCTCTAGAAACGGGTCTCATCAGCATATTCATA 355
BSNT_01495___ 339 CGTAAGCTACCCAGGA-TTAAAGCGGAAACCGCTGAGGGCGAAGGCAGGT 387
| .|| ||..|.|..||.|||||..|.||.||...||||
BPUM_2421___t 356 C------------TGATTTTCATCATAAGCCGCTTCGTGCAAAACAAGGT 393
BSNT_01495___ 388 CAAAATGTCACACAAATGTACTATGCAAAAAAGGGGATCATTACACCTGA 437
.....|||.||.||||||.|||||||||||||.||.||..|.||.|||||
BPUM_2421___t 394 GCCTGTGTGACGCAAATGCACTATGCAAAAAAAGGTATTGTCACGCCTGA 443
BSNT_01495___ 438 GATGGAATTTATCGCCATTCG--------TGAGCATGTGTCTCCTGAATT 479
.|||||.||.||||||.|..| |.||| |||||.||
BPUM_2421___t 444 AATGGAGTTCATCGCCTTAAGAGAAGGGCTAAGC--------CCTGAGTT 485
BSNT_01495___ 480 CGTCAGAGACGAGGTAGCCAGCGGCCGGGCGATTATTCCTTCAAACATTA 529
|||.|||||.||.||.||||||||..|.||..|.|||||..|.||.||||
BPUM_2421___t 486 CGTGAGAGAGGAAGTTGCCAGCGGAAGAGCTGTCATTCCAGCGAATATTA 535
BSNT_01495___ 530 ATCACCCTGAAAGTGAGCCAATGATTATCGGCCGGAATTTTCATGTGAAG 579
|.||.|||||||||||.||.|||||||||||..|.|||||||||||.||.
BPUM_2421___t 536 ACCATCCTGAAAGTGAACCGATGATTATCGGAAGAAATTTTCATGTCAAA 585
BSNT_01495___ 580 ATTAATGCAAATATCGGGAATTCAGCGGTTACGTCATCCATTGAAGAAGA 629
||.|||||.||.||.||.||||||||.||.||.|||||||||||.|||||
BPUM_2421___t 586 ATCAATGCGAACATTGGCAATTCAGCTGTGACATCATCCATTGATGAAGA 635
BSNT_01495___ 630 AGTGGAAAAAATGACGTGGGCCATCCGCTGGGGAGCGGATACGATGATGG 679
|||.|||||||||||.|||||.|||.|.|||||..|.||.||.|||||||
BPUM_2421___t 636 AGTTGAAAAAATGACATGGGCGATCAGATGGGGGACAGACACCATGATGG 685
BSNT_01495___ 680 ATCTCTCTACCGGAAAAGATATTCATACGACGCGTGAATGGATTATCCGC 729
||||.|||||.|||||.|||||||||||.|||.|.||||||||.||.||.
BPUM_2421___t 686 ATCTGTCTACAGGAAAGGATATTCATACAACGAGGGAATGGATCATACGG 735
BSNT_01495___ 730 AATTGCCCCGTGCCTGTGGGAACTGTTCCGATTTATCAGGCGCTTGAAAA 779
|||||.||.||.||.||.||.||.|||||.|||||||||||||||||.||
BPUM_2421___t 736 AATTGTCCAGTCCCAGTAGGCACCGTTCCCATTTATCAGGCGCTTGAGAA 785
BSNT_01495___ 780 AGTAAACGGCGTAGCGGAGGATTTAACGTGGGAGATTTATCGTGATACGC 829
|||.||.|||||.||.||.|||||.||||||||..|.||..|.||.||..
BPUM_2421___t 786 AGTGAATGGCGTGGCAGAAGATTTGACGTGGGACGTGTACAGAGACACAT 835
BSNT_01495___ 830 TAATCGAGCAGGCAGAGCAGGGAGTGGATTATTTTACGATTCACGCGGGT 879
||||.||.||.||||||||.|||||.||.||.||.||||||||.|||||.
BPUM_2421___t 836 TAATTGAACAAGCAGAGCAAGGAGTAGACTACTTCACGATTCATGCGGGC 885
BSNT_01495___ 880 GTTTTGCTTAGGTATGTACCGCTGACTGCCAAACGGACAACTGGTATTGT 929
||...|.|.||||||.|.||.|||||.|.|.|.|||...|||||||||||
BPUM_2421___t 886 GTGCGGTTAAGGTATATTCCTCTGACAGTCGACCGGGTGACTGGTATTGT 935
BSNT_01495___ 930 GTCACGCGGGGGAGCGATTATGGCGCAGTGGTGTCTGGCTCATCATCAAG 979
.|||.|.||.||.||.||||||||...|||||||||.|||||||||||||
BPUM_2421___t 936 TTCAAGAGGCGGTGCCATTATGGCAAGGTGGTGTCTTGCTCATCATCAAG 985
BSNT_01495___ 980 AAAGCTT--TTTATACACACATTTTGAAGAAATCTGTGAGATTATGAAAA 1027
|.|..|| |||||||.||| ||||||||.||.||||||||||||||||
BPUM_2421___t 986 AGAATTTCCTTTATACCCAC--TTTGAAGACATTTGTGAGATTATGAAAA 1033
BSNT_01495___ 1028 CGTATGATATTGCTTTCTCTCTTGGGGATGGTTTGCGTCCCGGATCAATT 1077
||||||||||||||||.||.|||||.|||||..|..|.||.||||||||.
BPUM_2421___t 1034 CGTATGATATTGCTTTTTCACTTGGAGATGGGCTTAGACCAGGATCAATA 1083
BSNT_01495___ 1078 GCTGATGCCAATGACGAAGCGCAGTTTGCTGAATTAGAGACGCTTGGAGA 1127
||||||||||||||.||||||||||||||.||..||||.|||.|.||.||
BPUM_2421___t 1084 GCTGATGCCAATGATGAAGCGCAGTTTGCAGAGCTAGAAACGTTAGGTGA 1133
BSNT_01495___ 1128 GCTGACGCAAATTGCCTGGAAGCATGATGTTCAGGTGATGATTGAGGGTC 1177
..||||..|.||.||.|||||.||||||||.||||||||||||||.||.|
BPUM_2421___t 1134 ATTGACAGAGATCGCTTGGAAACATGATGTACAGGTGATGATTGAAGGAC 1183
BSNT_01495___ 1178 CTGGACATGTTCCGATGCATAAAATCAAAGAGAACGTCGATAAACAAATG 1227
|||||||||||||.|||.|||||||||||||.||.||.||.||.||||||
BPUM_2421___t 1184 CTGGACATGTTCCAATGGATAAAATCAAAGAAAATGTGGACAAGCAAATG 1233
BSNT_01495___ 1228 GACATTTGTAAAGAAGCGCCTTTTTACACATTGGGGCCGTTGACAACGGA 1277
||.|||||.|||||.||.||.|||||.|||||.|||||..|.|||||.||
BPUM_2421___t 1234 GAGATTTGCAAAGAGGCACCATTTTATACATTAGGGCCTCTTACAACAGA 1283
BSNT_01495___ 1278 TATTGCTCCGGGATATGACCATATTACTTCAGCGATCGGAGCGGCGATGA 1327
||||||||||||||||||.||||||||.||.||.|||||.||.||.||||
BPUM_2421___t 1284 TATTGCTCCGGGATATGATCATATTACATCTGCCATCGGCGCAGCTATGA 1333
BSNT_01495___ 1328 TCGGTTGGTACGGGACAGCAATGCTTTGTTATGTAACGCCGAAGGAGCAT 1377
||||.|||||.||.|||||.|||||.||||||||||||||.|||||||||
BPUM_2421___t 1334 TCGGCTGGTATGGAACAGCGATGCTATGTTATGTAACGCCAAAGGAGCAT 1383
BSNT_01495___ 1378 TTGGGGCTGCCAAACCGTGATGATGTTCGTGAAGGAGTCATTACATATAA 1427
||.||||||||.|||...||.|||||..|.|||||.||.||..|.|||||
BPUM_2421___t 1384 TTAGGGCTGCCGAACAAAGAAGATGTAAGAGAAGGTGTGATCGCTTATAA 1433
BSNT_01495___ 1428 GATCGCTGCGCACGCTGCGGACCTTGCAAAAGGGCATCCCGGAGCGCAAA 1477
.||.||.||.||.|||||.||.||.||.|||||.|||||.|..||.||||
BPUM_2421___t 1434 AATTGCCGCTCATGCTGCTGATCTAGCGAAAGGACATCCTGCTGCTCAAA 1483
BSNT_01495___ 1478 TCCGGGATGATGCGTTATCGAAAGCCCGTTTTGAATTCCGCTGGCGGGAT 1527
..||.||||||||.|||||||||||..|.||||||||..|.|||||.||.
BPUM_2421___t 1484 AGCGTGATGATGCTTTATCGAAAGCAAGGTTTGAATTTAGATGGCGTGAC 1533
BSNT_01495___ 1528 CAGTTTAATTTATCTCTTGATCCGGAGAGAGCCCTTGAATACCATGATGA 1577
||.||.||..|.||.||||||||.||.|||||..|.|..|.|||||||||
BPUM_2421___t 1534 CAATTCAACCTGTCACTTGATCCAGAAAGAGCGATGGCGTTCCATGATGA 1583
BSNT_01495___ 1578 AACCCTGCCTGCTGAAGGAGCAAAAACCGCTCACTTTTGTTCCATGTGCG 1627
|||..|||||||.|||||.||.||.||.||.||.|||||.||.|||||||
BPUM_2421___t 1584 AACATTGCCTGCCGAAGGCGCTAAGACTGCCCATTTTTGCTCGATGTGCG 1633
BSNT_01495___ 1628 GTCCGAAATTTTGCAGCATGAGAATTTCACAGGATATTCGGGATTATGCG 1677
|.|||||.|||||||||||||.||||||.||.||||||||
BPUM_2421___t 1634 GACCGAAGTTTTGCAGCATGAAAATTTCCCATGATATTCG---------- 1673
BSNT_01495___ 1678 AAGAAAAACGATCTCAGTGAAGCAGAAGCCATAAATAAAG-GATTAAAAG 1726
||.|.||.||||||...|.||.|||| ||| ..||
BPUM_2421___t 1674 --------------CAATCAATCAGAAGAAGTGAAAAAAGAGAT--GGAG 1707
BSNT_01495___ 1727 AA-AAAGCAAAAGAGTTTGTC----GATACGGGAAGC--AATTTATATCA 1769
|| ||.||.||.||||||.|| || |||||| |||.||| |||
BPUM_2421___t 1708 AAGAAGGCGAAGGAGTTTATCAGCGGA----GGAAGCCAAATATAT-TCA 1752
BSNT_01495___ 1770 --ATAA 1773
.|||
BPUM_2421___t 1753 TCCTAA 1758
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