Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04025 and BPUM_2417
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:32
# Commandline: needle
# -asequence dna-align/BSNT_04025___bofC.1.24716.seq
# -bsequence dna-align/BPUM_2417___bofC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04025___bofC-BPUM_2417___bofC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04025___bofC-BPUM_2417___bofC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04025___bofC
# 2: BPUM_2417___bofC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 599
# Identity: 332/599 (55.4%)
# Similarity: 332/599 (55.4%)
# Gaps: 172/599 (28.7%)
# Score: 923.5
#
#
#=======================================
BSNT_04025___ 1 ------------GTGAAACGATTCAG---CACGGCGTATCTTTTG----C 31
.|||||.|.||| | ||.|.|.|||| .|| .
BPUM_2417___b 1 GTGAAAGTGAAGATGAAATGTTTC-GTTACAGGACTTATC--ATGACAAG 47
BSNT_04025___ 32 TGGGCATTCTTT-GCTCAGCGGCAGTATTTTTAATA-GGAGCTCCTTCCC 79
||.||.||.||| ||| |||| ||| ||||
BPUM_2417___b 48 TGTGCTTTTTTTCGCT--GCGG-----------ATATGGAG--------- 75
BSNT_04025___ 80 GCG--------CACTTG-----GCGCGGAAGTGGAGCACTATGAGCCGCT 116
| |||||| || |||..|.|.|.||.|.|
BPUM_2417___b 76 --GGAAAAGAACACTTGCAAAAGC-----AGTCAAACTCGATCACC---- 114
BSNT_04025___ 117 GCAGGTGCATGTGCAGCTTGAAAAGGTGTATTTGGACGGCGATGTCAGCA 166
||.|||||||||||.||.|||.|.|||||.|||||.||.|
BPUM_2417___b 115 ----------GTACAGCTTGAAAAAGTCTATCTAGACGGAGATGTGAGTA 154
BSNT_04025___ 167 TTGA----------GCATAGGCAT-----GAAAAAGTGTTTTCTATGGAT 201
|||| |||| ||| ||.||| ||.
BPUM_2417___b 155 TTGAAAGACACCGGGCAT---CATTAGAAGACAAA------------GAC 189
BSNT_04025___ 202 GATTTTTGG--GCAGCTTATGCCGGATGGACGCTTGTGGAACAAAAAAAG 249
...||.||| |||| |||...||.||||||||.||.|||||.|||.||
BPUM_2417___b 190 ACATTCTGGTCGCAG--TATAAAGGCTGGACGCTAGTAGAACAGAAAGAG 237
BSNT_04025___ 250 GGATATGTGCTCTTCCGGAAGCAAATGGACGATATATCTCCGCTCAGCAA 299
|..|.||.|||.||..|.||||||||.||.|||||.|||||..|.||.||
BPUM_2417___b 238 GATTTTGCGCTTTTTAGAAAGCAAATTGATGATATCTCTCCATTAAGTAA 287
BSNT_04025___ 300 GGTCAACGGGTATATCGGTGTATCGGATAATGGAGTGATTTCTACTTTTC 349
.|..||.||.||||||||..||||.||..|.||.|||||||||||.||||
BPUM_2417___b 288 AGCAAATGGATATATCGGATTATCAGAGGACGGTGTGATTTCTACGTTTC 337
BSNT_04025___ 350 ATGGGCGGCCTGAGCCAGCT--TCCGAACCAATTCAGTCT-TTTTTTCAA 396
||||..||||||| |.||| .|.||.||.||||| ||| |||||||||
BPUM_2417___b 338 ATGGAAGGCCTGA--CGGCTGGGCGGAGCCCATTCA-TCTCTTTTTTCAA 384
BSNT_04025___ 397 ATTGA---------TTTAGAAAGGC---TGGA-AAGCCATATGCAAAAAA 433
||||| |||||||||.| |||| .|||
BPUM_2417___b 385 ATTGATACGTCCCGTTTAGAAAGTCATGTGGAGGAGC------------- 421
BSNT_04025___ 434 ATCTGCTGA--AAGGCATTCCATTTCGGACAAAAGCGGAGTTTGAGGATG 481
|.|| ||| ||||||||||.|||||.|||||.|..||.||||||.|||
BPUM_2417___b 422 AGCT--TGAGCAAGGCATTCCTTTTCGAACAAAGGATGAATTTGAGCATG 469
BSNT_04025___ 482 TCATCGAACATATGAAGACATACAGCGGGTAA----------------- 513
|..|.|||...|||||..|.|||.| ||
BPUM_2417___b 470 TGCTTGAAGTCATGAAACCTTACCG-----AAATGAAATATCGTTTTAA 513
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