Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04020 and BPUM_2413
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:32
# Commandline: needle
# -asequence dna-align/BSNT_04020___queA.1.24716.seq
# -bsequence dna-align/BPUM_2413___queA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04020___queA-BPUM_2413___queA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04020___queA-BPUM_2413___queA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04020___queA
# 2: BPUM_2413___queA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1071
# Identity: 770/1071 (71.9%)
# Similarity: 770/1071 (71.9%)
# Gaps: 84/1071 ( 7.8%)
# Score: 2683.5
#
#
#=======================================
BSNT_04020___ 1 ATGAAAGTCGATTTATTTGATTTTGAACTACCAGAACGTTTAATTGCACA 50
|||||..|.||..|||||||||||||..||||||||.|.|||||||||||
BPUM_2413___q 1 ATGAAGTTAGAACTATTTGATTTTGATTTACCAGAAAGATTAATTGCACA 50
BSNT_04020___ 51 AGTACCGTTGGAGCAGCGTGATGCTTCAAGGCTGATGGTGCTCGATAAAC 100
|||||||.|.||..|.|||||.||.|||||.|||||||| || |||||
BPUM_2413___q 51 AGTACCGCTTGAAAAACGTGACGCATCAAGACTGATGGT-CT---TAAAC 96
BSNT_04020___ 101 ATACA----GGAGAGCTTACTGACAGCTCGTTTAAACACATTATCA---- 142
|.||| ||.|| |.||||| |.|| |.|||||.|||
BPUM_2413___q 97 AAACAAACGGGTGA----AGTGACA-CACG-----ATACATTCTCACAAA 136
BSNT_04020___ 143 -----GCTTCTTT---AACGAAGGCGATTGTCTAGTCCTGAACAATACCC 184
|.||.||| |||| ||.|||||.||.||..|.||.|||||.|
BPUM_2413___q 137 TTACCGATTATTTTCAAACG--GGTGATTGCCTCGTTTTAAATAATACAC 184
BSNT_04020___ 185 GGGTACTGCCTGCGCGGTTATTCGGCACAAAAGAGGATACCGGCGCGAAA 234
|.||.|||||.||.|||||.||.||.|..|||||||||||.||.||.|||
BPUM_2413___q 185 GCGTTCTGCCGGCACGGTTGTTTGGAATGAAAGAGGATACAGGTGCAAAA 234
BSNT_04020___ 235 GTGGAACTTCTTTTGTTGAAAC---AGGAAACCGGTGATAAATGGGAAAC 281
||.|||||||||.|.||.|||| ||||| ||.||.|||||||||||
BPUM_2413___q 235 GTTGAACTTCTTCTCTTAAAACAAGAGGAA---GGAGACAAATGGGAAAC 281
BSNT_04020___ 282 ACTTGCCAAACCGGCGAAACGGGTGAAAAAAGGAACTGTTGTCACATTTG 331
|||||..|||||.||.|||||.||||||||||||||.||..|||||||||
BPUM_2413___q 282 ACTTGTGAAACCAGCCAAACGAGTGAAAAAAGGAACAGTGATCACATTTG 331
BSNT_04020___ 332 GAGACGGA-AGATTGAAGGCAATCTGCACGGAAGAGCTTGAGCACGGCGG 380
|.||.||| .|.||.|| ||..|.||.||.|||||..|.||.||.|||||
BPUM_2413___q 332 GTGATGGACGGCTTCAA-GCGGTATGTACAGAAGAATTAGAACATGGCGG 380
BSNT_04020___ 381 CAGAAAGATGGAATTTCAATATGAC-GGTATTTTCTACGAGGTGCTTGAA 429
||||||..|.||.|||||.||| || ||.|||||.||.||.||.||||||
BPUM_2413___q 381 CAGAAAAGTTGAGTTTCAGTAT-ACTGGCATTTTTTATGAAGTCCTTGAA 429
BSNT_04020___ 430 TCCCTTGGAGAGATGCCGCTCCCTCCATATATCAAAGAACAGCTTGATGA 479
||.|||||.||.||||||||.|||||.|||||.||||||||||||||.||
BPUM_2413___q 430 TCTCTTGGGGAAATGCCGCTACCTCCTTATATTAAAGAACAGCTTGACGA 479
BSNT_04020___ 480 CAAAGAGCGCTACCAGACAGTGTATTCAAAAGAAATCGGCTCTGCTGCTG 529
....||.|||||.||.||.||||||||||||||..|||||||.|||||||
BPUM_2413___q 480 TCGTGAACGCTATCAAACGGTGTATTCAAAAGAGGTCGGCTCCGCTGCTG 529
BSNT_04020___ 530 CGCCTACAGCTGGCCTTCACTTCACGGAAGAAAT-CTTACAGCAGCTGAA 578
|.||.||.|||||.||||||||.||..|.||..| ||....|| ||||||
BPUM_2413___q 530 CTCCAACTGCTGGTCTTCACTTTACAAACGAGCTGCTGGATGC-GCTGAA 578
BSNT_04020___ 579 AGACAAAGGCGTGCAAATTGAGTTCATCACACTGCACGTAGGCCTTGGAA 628
|||.||.||.|||||.||.|..|||||.||.|||||.||.||.|||||.|
BPUM_2413___q 579 AGAAAAGGGTGTGCACATCGCATTCATTACTCTGCATGTGGGACTTGGTA 628
BSNT_04020___ 629 CGTTTCGCCCTGTGAGTGCCGAT-GAAGTGGAAGAGCATAATATGCATGC 677
|.||.||.||.||.|||||.||| |.| |.|||||.||..|.|||||.||
BPUM_2413___q 629 CTTTCCGTCCGGTCAGTGCAGATCGTA-TTGAAGAACACGAAATGCACGC 677
BSNT_04020___ 678 AGAGTTTTATCAAATGTCAGAAGAAA---CGGCTGCAGCCTTAAAC---- 720
|||||||||..|||||...||||||| |||||| || |||||.|
BPUM_2413___q 678 AGAGTTTTACGAAATGAATGAAGAAACAGCGGCTG-AG-CTTAATCGCGT 725
BSNT_04020___ 721 ---AAAGTAAGAGAAAATGGCGGTCGGATCATTTCTGTCGGCACGACCTC 767
.|||.|| |||||.|||||.|||||.||.||.||.||.||
BPUM_2413___q 726 TCGCAAGGAA--------GGCGGGCGGATTATTTCAGTGGGGACAACGTC 767
BSNT_04020___ 768 GACACGCACGCTTGAGACGATTGCCGGGGAACATGACGGGCAATTTAAAG 817
.|||.|.|||||.||.||.|||||..|.|..|||||.||..||||.||||
BPUM_2413___q 768 AACAAGAACGCTCGAAACCATTGCAAGTGCGCATGATGGCGAATTCAAAG 817
BSNT_04020___ 818 CATCAAGCGGCTGGACATCTATTTTTATTTATCCGGGCTATGAATTTAAA 867
|.||||||||||||||.||.||.||||||||.||.||||||..|||.||.
BPUM_2413___q 818 CGTCAAGCGGCTGGACGTCAATCTTTATTTACCCAGGCTATACATTCAAG 867
BSNT_04020___ 868 GCCATTGACGGAATGATTACAAACTTCCATTTGCCGAAATCGTCATTGAT 917
||.|||||.||.|||||.||.||.||.|||.||||.|||||.||.||.||
BPUM_2413___q 868 GCAATTGATGGCATGATCACGAATTTTCATCTGCCAAAATCCTCGTTAAT 917
BSNT_04020___ 918 TATGCTGGTCAGCGCGCTTGCTGGAAGAGAAAACATTCTGCGTG-CCTAT 966
.|||||.|||||.||..|.|||||..|||| ||.|| ||||.
BPUM_2413___q 918 CATGCTTGTCAGTGCATTAGCTGGGCGAGA---------GCATGTCCTAA 958
BSNT_04020___ 967 AACCAT--------GCAGTGGAAGAGGAATACCGTTTCTTCAGCTTCGGA 1008
|..||| ||.||..||||||||||.||.|||||||||||.||.
BPUM_2413___q 959 AGGCATACAATGAAGCTGTAAAAGAGGAATATCGCTTCTTCAGCTTTGGC 1008
BSNT_04020___ 1009 GACGCGATGCTGATTATATAA 1029
||.||.|||||||||..||||
BPUM_2413___q 1009 GATGCCATGCTGATTCAATAA 1029
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