Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04019 and BPUM_2412
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:32
# Commandline: needle
# -asequence dna-align/BSNT_04019___tgt.1.24716.seq
# -bsequence dna-align/BPUM_2412___tgt.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04019___tgt-BPUM_2412___tgt.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04019___tgt-BPUM_2412___tgt.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04019___tgt
# 2: BPUM_2412___tgt
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1169
# Identity: 902/1169 (77.2%)
# Similarity: 902/1169 (77.2%)
# Gaps: 46/1169 ( 3.9%)
# Score: 3480.5
#
#
#=======================================
BSNT_04019___ 1 --GTGGCTGAACAACCAATACGCTATGAATTTATAAAAGAATGCAAACAA 48
||.|| ||..|||.|||||.|||||.||.||.|||..||||||||||
BPUM_2412___t 1 TTGTCGC--AATTACCGATACGTTATGAGTTCATTAAATCATGCAAACAA 48
BSNT_04019___ 49 ACAGGAGCGCGGCT-GGGCAAAGTGCATACGCCTCACGGCTCCTTCGAAA 97
|||||.||.||.|| |||| ..||.|||||.||.||||||||.||.||.|
BPUM_2412___t 49 ACAGGTGCACGACTCGGGC-GCGTTCATACACCGCACGGCTCATTTGACA 97
BSNT_04019___ 98 CGCCGGTTTTTATGCCGGTCGGCACACTGGCGACAGTCAAAACAATGTCG 147
||||.||.|||||||||||.||.||||||||.|||||||||||.|||.|.
BPUM_2412___t 98 CGCCTGTATTTATGCCGGTAGGTACACTGGCTACAGTCAAAACGATGGCA 147
BSNT_04019___ 148 CCTGAAGAGCTGAAAGCAATGGATGCAGGCATCATTTTGAGCAACACTTA 197
||||||||.||.||.||||||||.|||||.|||||.||.|||||.||.||
BPUM_2412___t 148 CCTGAAGAACTAAAGGCAATGGAAGCAGGTATCATCTTAAGCAATACGTA 197
BSNT_04019___ 198 TCATCTATGGCTTCGTCCGGGCCAAGACATTGTCAAAGAAGCGGGCGGGC 247
.||.||||||||.||||||||.||.||||||||.||||||||.|||||.|
BPUM_2412___t 198 CCACCTATGGCTCCGTCCGGGTCATGACATTGTGAAAGAAGCAGGCGGCC 247
BSNT_04019___ 248 TCCATAAATTTATGAACTGGGACCGCGCAATTTTAACAGATTCAGGCGGT 297
|.||.|||||||||||||||||.||.||.||||||||.||||||||||||
BPUM_2412___t 248 TGCACAAATTTATGAACTGGGATCGAGCGATTTTAACCGATTCAGGCGGT 297
BSNT_04019___ 298 TTTCAGGTCTTTTCTTTAAGCAAGTTTCGTAATATAGAGGAAGAGGGTGT 347
||.||.|||||.|||||.||..|.|||.|.||.||.||.|||||.||.||
BPUM_2412___t 298 TTCCAAGTCTTCTCTTTGAGTGAATTTAGAAAAATTGAAGAAGAAGGCGT 347
BSNT_04019___ 348 CCATTTCCGCAATCATCTAAATGGAGACAAGCTGTTTTTATCTCCGGAAA 397
.||.|||||.||||||.||||||||||.|||||||||.|.|||||.||.|
BPUM_2412___t 348 TCACTTCCGTAATCATTTAAATGGAGATAAGCTGTTTCTTTCTCCTGAGA 397
BSNT_04019___ 398 AAGCGATGGAGATCCAAAACGCACTCGGCTCTGATATTATGATGGCGTTT 447
|.||||||||.||||||||.||.||.||||||||||||||||||||.|||
BPUM_2412___t 398 AGGCGATGGACATCCAAAATGCGCTTGGCTCTGATATTATGATGGCATTT 447
BSNT_04019___ 448 GACGAATGCCCACCATACCCGGCGGAGTACGACTACATGAAGAGGTCAGT 497
||.||||||||.|||||.||.||.||.|||||.||||||||..|.||.||
BPUM_2412___t 448 GATGAATGCCCGCCATATCCAGCAGAATACGATTACATGAAACGTTCTGT 497
BSNT_04019___ 498 TGAACGGACAAGCCGTTGGGCGGAACGCTGCCTGAATGCCCA-CAATCGT 546
.||.|||||||||.|.|||||.|||||||||||.|..||.|| ||| |||
BPUM_2412___t 498 AGAGCGGACAAGCAGATGGGCAGAACGCTGCCTAACAGCGCATCAA-CGT 546
BSNT_04019___ 547 CAGGATGAACAAGGGCTGTTTGGTATTGTACAAGGCGGAGAATATGAAGA 596
|..||.||.|||||.||||||||.||..|.||||||||||||||.|||||
BPUM_2412___t 547 CCAGAGGATCAAGGACTGTTTGGAATCATCCAAGGCGGAGAATACGAAGA 596
BSNT_04019___ 597 TCTGCGGACACAAAGTGCGAAGGA-CTTGATTTCGCTTGATTTTCCCGGA 645
.||.||.|.|||||||||.||.|| ||.| |.||.||||||||.||.||.
BPUM_2412___t 597 GCTTCGTAAACAAAGTGCAAAAGATCTCG-TGTCACTTGATTTCCCAGGC 645
BSNT_04019___ 646 TATGCTATAGGCGGATTGTCTGTTGGTGAACCGAAGGATGTCATGAATCG 695
||.|||||.||.||.||.||||||||.|||||.||.|||||.|||||.||
BPUM_2412___t 646 TACGCTATCGGAGGTTTATCTGTTGGGGAACCAAAAGATGTGATGAACCG 695
BSNT_04019___ 696 TGTACTCGAATTTACAACACCGCTCTTGCCGAAG--GATAAACCGAGATA 743
||||||.||.||.|||||.||..|.||.|| || ||.||.||.||.||
BPUM_2412___t 696 TGTACTTGAGTTCACAACGCCATTGTTACC--AGCAGACAAGCCAAGGTA 743
BSNT_04019___ 744 TCTGATGGGAGTAGGTTCTCCGGACGCACTGATCGACGGAGCGATCCGCG 793
..|.|||||.||.||.||.||.||..|..|.||.|||||.||.||.||||
BPUM_2412___t 744 CTTAATGGGCGTCGGCTCGCCAGATTCCTTAATTGACGGTGCCATTCGCG 793
BSNT_04019___ 794 GGGTCGATATGTTTGACTGTGTGCTGCCTACACGGATTGCAAGAAACGGC 843
|.||.||||||||||||||.||..||||.|||||.|||||.||||||||.
BPUM_2412___t 794 GTGTAGATATGTTTGACTGCGTATTGCCAACACGAATTGCGAGAAACGGT 843
BSNT_04019___ 844 ACAGTGTTTACTGCT----------GAAGGACGACTCAATATGAAAAATG 883
|| ||| ||||||||.||...|.|||||||||
BPUM_2412___t 844 AC----------GCTCATGACGAGCGAAGGACGTCTTGTTGTGAAAAATG 883
BSNT_04019___ 884 CGAAATTTGAAAGAGACTTCCGTCCGATTGATGAAGAGTGTGATTGCTAT 933
|.||||.|||..|.||.||..|.||.||.||||||.|.|||||.|||||.
BPUM_2412___t 884 CAAAATATGAGCGTGATTTTAGACCAATCGATGAAAATTGTGACTGCTAC 933
BSNT_04019___ 934 ACATGTAAAAACTACACTCGCGCGTACATTAGGCACTTGATTCGCTGC-- 981
|||||||||||||||||.||.||.||.|||||.||.||||| |
BPUM_2412___t 934 ACATGTAAAAACTACACACGTGCTTATATTAGACATTTGAT------CAA 977
BSNT_04019___ 982 ----AATGAAACATTCGGCCTTCGATTAACAACTTACCATAACCTTCATT 1027
||||||||.|||||..||||||||||||||||.|||||.|||||||
BPUM_2412___t 978 AACAAATGAAACGTTCGGAATTCGATTAACAACTTATCATAATCTTCATT 1027
BSNT_04019___ 1028 TTCTGTTACACTTAATGGAGCAGGTAAGACAGGCTATTCGCGAGGATCGT 1077
||||||||.|.|||||||||||.||.|||.|.|||||.||.|||||||||
BPUM_2412___t 1028 TTCTGTTAAAATTAATGGAGCAAGTGAGAGAAGCTATCCGTGAGGATCGT 1077
BSNT_04019___ 1078 CTGGGTGATTTCAGAGAAGAGTTCTTTGAGCGTTACGGCTATAACAAGCC 1127
.|.||||||||.|.|||||||||.||||||||||||||||.||||.|.||
BPUM_2412___t 1078 TTAGGTGATTTTAAAGAAGAGTTTTTTGAGCGTTACGGCTTTAACGAACC 1127
BSNT_04019___ 1128 AAATGCGAAAAGCTTCTAA 1146
.||||||||||.|||.|||
BPUM_2412___t 1128 GAATGCGAAAAACTTTTAA 1146
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