Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04018 and BPUM_2411

See Amino acid alignment / Visit BSNT_04018 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:32
# Commandline: needle
#    -asequence dna-align/BSNT_04018___yajC.1.24716.seq
#    -bsequence dna-align/BPUM_2411___yajC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04018___yajC-BPUM_2411___yajC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04018___yajC-BPUM_2411___yajC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04018___yajC
# 2: BPUM_2411___yajC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 279
# Identity:     184/279 (65.9%)
# Similarity:   184/279 (65.9%)
# Gaps:          21/279 ( 7.5%)
# Score: 580.0
# 
#
#=======================================

BSNT_04018___      1 ATGATGACTGGCACTTTAGGTACATTGGTTCCTATTATTTTAATGTTTGC     50
                        |||..|||...|.|.|||.||.|..||...|||.||.|.||||||||
BPUM_2411___y      1 ---ATGGATGGTGGTATGGGTTCAATCATTATGATTGTTGTCATGTTTGC     47

BSNT_04018___     51 GGTCCTTTACTTCTTGCTGATTCGTCCTCAGCAAAAGCAGCAAAAGGCTG    100
                     .||.|||||||||||..|.||.|||||.|||||||||||.|||||.||||
BPUM_2411___y     48 TGTGCTTTACTTCTTATTAATCCGTCCACAGCAAAAGCAACAAAAAGCTG     97

BSNT_04018___    101 TACGCCAAATGCAAGAGGAA-CTGAA--AAAAGGCGATTCAGTAGTGACA    147
                     |.||.||.||||   ||.|| ||..|  ||||||||||..|.|.||.|||
BPUM_2411___y     98 TGCGTCAGATGC---AGCAATCTTTATCAAAAGGCGATAAAATCGTCACA    144

BSNT_04018___    148 ATCGGGGGATTGCACGGTACTGTTGACTCTATCGACGAAAGCAAAGTCGT    197
                     |||||.||.||.||||||....|.||||..||.||.|||...|||||.||
BPUM_2411___y    145 ATCGGTGGTTTACACGGTGAAATCGACTACATTGATGAATCAAAAGTGGT    194

BSNT_04018___    198 AATTAAGACTGGTGATAACACACGTCTTACGTTCGACCGCCGCGCGATCA    247
                     .||.||.||..|.||.||||..|||.|.||.|||||.||.||.||.||.|
BPUM_2411___y    195 CATCAAAACAAGCGAAAACAACCGTTTAACTTTCGATCGTCGTGCTATTA    244

BSNT_04018___    248 GAGAAGTTTCTGCTGCTGAATAA------    270
                     |||||.|      .|||||..||      
BPUM_2411___y    245 GAGAATT------AGCTGACAAAGGCTAA    267


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