Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04014 and BPUM_2408
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:31
# Commandline: needle
# -asequence dna-align/BSNT_04014___spoVB.1.24716.seq
# -bsequence dna-align/BPUM_2408___spoVB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04014___spoVB-BPUM_2408___spoVB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04014___spoVB-BPUM_2408___spoVB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04014___spoVB
# 2: BPUM_2408___spoVB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1643
# Identity: 1101/1643 (67.0%)
# Similarity: 1101/1643 (67.0%)
# Gaps: 166/1643 (10.1%)
# Score: 3515.5
#
#
#=======================================
BSNT_04014___ 1 ------------ATGGCGAAACAGACGTTTTTAAAGGGCACTCTTATCCT 38
.||.|.||.||.||||||||||||||.||..||||..|
BPUM_2408___s 1 GTGATCTTTGATTTGACAAAGCAAACGTTTTTAAAGGGAACGATTATTTT 50
BSNT_04014___ 39 TATCGCAGCAGGAATGGTTACAAGAATGCTCGGGTTTGTCAACCGGGTGG 88
.||...||||||..|..|.||.|||||..|.||.||||||||.||..|.|
BPUM_2408___s 51 AATTTTAGCAGGTTTTATCACGAGAATATTGGGTTTTGTCAATCGAATTG 100
BSNT_04014___ 89 TTATCGCCCGTTTTATCGGTGAAGAAGGAGTCGGGCTTTACATGATGGCA 138
|.||.||..|.||.||.||.||||||||||||||||||||.||||||||.
BPUM_2408___s 101 TGATTGCAAGGTTCATTGGCGAAGAAGGAGTCGGGCTTTATATGATGGCT 150
BSNT_04014___ 139 GCGCCTACC-TTCTTCTTGGCCACT---ACATTAACTCAATTCGGTCTGC 184
||.|||||| ||.|||| |.|| ||..|.||.||||||||.||||
BPUM_2408___s 151 GCTCCTACCTTTTTTCT----CGCTGTGACGCTGACACAATTCGGACTGC 196
BSNT_04014___ 185 CGGTCGCGATCAGCAAGCTAGTCGCTGAAGCCAG-TGCGCGCGGAGATCA 233
|.|||||.||.||.|||||.|||||.|||| ||| .||.||||||||..|
BPUM_2408___s 197 CTGTCGCTATAAGTAAGCTTGTCGCAGAAG-CAGAAGCCCGCGGAGACAA 245
BSNT_04014___ 234 TCAAAAAACGAAAAATATTTTAGTCATGTCTCTGACCATCAC-GGGAGTG 282
.||.|||||.|||...|||.|.|||||||||||..|..|.|| |||| ..
BPUM_2408___s 246 ACAGAAAACAAAACGAATTCTTGTCATGTCTCTTGCAGTAACAGGGA-CA 294
BSNT_04014___ 283 CTCAGCCTCATCTTTACACCGCTGTTTCTGTTTTTCGCCCCGGTTATGGC 332
||||||||.||.||.||.|||||.|||.|.|..||.||.||..|.|||||
BPUM_2408___s 295 CTCAGCCTGATATTCACGCCGCTCTTTTTATGGTTTGCACCCATCATGGC 344
BSNT_04014___ 333 TGAAACGATGCTGACAGATAAGCGAACACTGTATCCGC-TCTTGGCCATT 381
.||||..||||||||||||....||||..|.|||||.| |||| ||.|||
BPUM_2408___s 345 AGAAAATATGCTGACAGATCCTAGAACGGTTTATCCACTTCTT-GCTATT 393
BSNT_04014___ 382 ACGCCGGTTGTGCCGATTATTGCTATATCGAGTGTGCTGAGGGGATACTT 431
|||||.|||||.||..|.||.|||||.||.|||||.|||||.|||||.||
BPUM_2408___s 394 ACGCCTGTTGTCCCAGTCATCGCTATTTCCAGTGTACTGAGAGGATATTT 443
BSNT_04014___ 432 TCAAGGAAAACAGAATATGAACCCGCTTGCTATGTCACAAGTCCTTGAAC 481
||||||.|.||||.|.||||.|||||||||.||.||.|||||.||.||||
BPUM_2408___s 444 TCAAGGCAGACAGCAAATGAGCCCGCTTGCCATATCTCAAGTGCTGGAAC 493
BSNT_04014___ 482 AGGTCGTCCGCATTTCACTCGTGGCTGTCTGCACAACGATTTTTCTCCCT 531
||||.|...|.|||||.||.||.||.||.||.|||||...||||||.|||
BPUM_2408___s 494 AGGTTGCAAGAATTTCTCTAGTAGCCGTATGTACAACAGCTTTTCTTCCT 543
BSNT_04014___ 532 TACGGAATTGAATATGCTGCAGCGGGGGCAATGCTATCCTCAGTGGCA-- 579
||.||.|||||||.|||.|||||.||.||.|||.|.||.|| ||.||
BPUM_2408___s 544 TATGGGATTGAATTTGCGGCAGCAGGTGCGATGATTTCATC--TGTCATT 591
BSNT_04014___ 580 GGGGAGCTGGCATCACTTCTTTATTTATTCGTTTGCTTTAAGTATAAAAA 629
||.|||.||...||||||..|||||||.|..||..||||...||.|||||
BPUM_2408___s 592 GGAGAGATGATTTCACTTGCTTATTTACTAATTGCCTTTCGTTACAAAAA 641
BSNT_04014___ 630 GACAATTAAAATCAGAAAGCATTTTTTCCAGTCAATTAAAAACGGAAAAC 679
|||.|||...||..||||.|..||||||.||.|||||.|..||||.||..
BPUM_2408___s 642 GACCATTCGCATTCGAAAACGATTTTTCAAGGCAATTCATGACGGTAAGG 691
BSNT_04014___ 680 AAACCTTTACCCAATTAATGAGCGTGTCCCTTCCAACAACCGGGAGCCGC 729
|.||.||||..||..|.|||||..|..||||.||||||||.||.|||||.
BPUM_2408___s 692 ACACATTTAAGCAGCTGATGAGTATTGCCCTGCCAACAACAGGCAGCCGT 741
BSNT_04014___ 730 TTTATCGGAAACCTCTCTTGGTTTTTCGAGCCAATCGTCGTCGCTCAAAG 779
||||||||.||..|.||.||||||||.|||||.||.||.|||||.|||||
BPUM_2408___s 742 TTTATCGGGAATATTTCGTGGTTTTTAGAGCCGATAGTTGTCGCGCAAAG 791
BSNT_04014___ 780 CCTTGCCATCGCCGGTGTGGCAACAGTTGCCGCAACAAAGCAATACGGGG 829
.|||||.||.||.||....||..|.||||..||.||||.|||.|||||||
BPUM_2408___s 792 TCTTGCGATTGCTGGATACGCGGCTGTTGAGGCGACAAGGCAGTACGGGG 841
BSNT_04014___ 830 AACTGACCGGCTTTGCCATGACGCTGCTGACTCTGCCCAGCTTTATTACA 879
|..|||||||..||||..||||.||..||||.|||||.|||||||||||.
BPUM_2408___s 842 AGTTGACCGGGCTTGCGCTGACTCTTTTGACACTGCCTAGCTTTATTACG 891
BSNT_04014___ 880 TATTCTTTGTCGACCGCGCTTGTTCCTGCGATCAGTGAAGGAATGGAGCA 929
||||||.|.||.||.||.||.||.||.|||||||||||||||||||||||
BPUM_2408___s 892 TATTCTCTCTCCACTGCACTGGTCCCGGCGATCAGTGAAGGAATGGAGCA 941
BSNT_04014___ 930 GAAAAAATTGC-AGGTGGTGGAATACCGCTTGGAACAGGCGATGCGTCTC 978
|||.||| .|| |...|||.||||||.|..||.|.||||||||||||||.
BPUM_2408___s 942 GAACAAA-CGCAAAACGGTCGAATACAGGCTGAAGCAGGCGATGCGTCTT 990
BSNT_04014___ 979 TGTCTGCTCAGCGGAGGCATTTCAGTTGTTATTTTATTTGTATTTGCGGA 1028
|||.|.|||||.||.||.|||||...|.|||||.|.|||||.|..||.||
BPUM_2408___s 991 TGTTTACTCAGTGGGGGTATTTCCTGTATTATTCTTTTTGTTTACGCAGA 1040
BSNT_04014___ 1029 TGAGCTGA-----TGAGAGTGATGTACGGTTCTT--CAGGCGCAGCTGTA 1071
.||..|.| | |.|||||.|||||.| ||.|||..| |
BPUM_2408___s 1041 AGATTTAACACTCT-----TTATGTATGGTTCATCGCATGCGGCG----A 1081
BSNT_04014___ 1072 TTTA--TAAAAGTGATGGCCCCGTTTTTTCTGCTTTATTATTTTCAAGGC 1119
|||| |.|||.|.|||||.||.||||||||..|.||||||||||||||.
BPUM_2408___s 1082 TTTATGTGAAATTCATGGCTCCATTTTTTCTATTATATTATTTTCAAGGG 1131
BSNT_04014___ 1120 CCGCTTCAAGCTGTGCTGCAGGCGCTTAATTTGGCAGGAGCTGCGATGAT 1169
|||||||||||.||..|.||.||.||.|||||.||.||.||.|||||||.
BPUM_2408___s 1132 CCGCTTCAAGCCGTCTTACAAGCACTCAATTTAGCTGGTGCGGCGATGAC 1181
BSNT_04014___ 1170 GAACAGCTTAATCGGAGCGCTAGTCAAAACAGGCCTTATTTTTGTCCTTG 1219
|||.||..|.||.||.||..|.||.||||||||..|.||.|||||.||||
BPUM_2408___s 1182 GAATAGTCTGATAGGTGCTGTCGTGAAAACAGGAATGATCTTTGTTCTTG 1231
BSNT_04014___ 1220 CC-----ACAAGGCCTTCTCTTGGCATTATGGGCGCGGCATTAGCCATTG 1264
|| .|.|||| .|||||||||||||.||.|||.|.||||||.
BPUM_2408___s 1232 CCTCGCAGCCAGGC-----TTTGGCATTATGGGGGCAGCACTTGCCATTT 1276
BSNT_04014___ 1265 TGACAGGCATGGTGCTCGTCACGCTATTGCACGCAGCAACCGTAAGCAAA 1314
|.|..|||||.||.||.||||||||..|.||.||.|||||.||..|.|||
BPUM_2408___s 1277 TAATCGGCATCGTCCTTGTCACGCTGCTTCATGCGGCAACTGTCGGTAAA 1326
BSNT_04014___ 1315 GTGCTGCCGAT--------CAGCATCAA--AATCAAGGAGTACGCGCTCA 1354
||.|||||.|| || ||.|| ||| |.||.|||.|||.|
BPUM_2408___s 1327 GTACTGCCTATTCATTTACCA--ATAAAAGAAT-ATGGGGTATGCGTT-- 1371
BSNT_04014___ 1355 GCTTCGCTG-TTAT------------TGTAA---TTTG------------ 1376
||| .|| |||| |||.| ||||
BPUM_2408___s 1372 -CTT--GTGATTATCGGTACTGGGGCTGTGAGCCTTTGGCTGAAGTCTCA 1418
BSNT_04014___ 1377 ------CGGATTCATCAGCTCCGCCATCAAACATTATATAAGCTTTGGAG 1420
|||||||.| |||.||| .||.|.|||
BPUM_2408___s 1419 AATGAACGGATTCTT---CTCTGCC----------------CCTATTGAG 1449
BSNT_04014___ 1421 CATC-TGAGGCTGTCAATCTAGCCGGATGGATTG---CGGTGAGCGCCGC 1466
| || |.|.|||| ||.| ||| | |||.||||
BPUM_2408___s 1450 C-TCGTTATGCTG---ATTT-----------TTGTAAC-GTGCGCGC--- 1480
BSNT_04014___ 1467 CATTTATATGATCCTCCTGCTCGTTTTCCGTTTAATTAAAAAAGATGAGC 1516
|.|||.|.||.||..|..||..|.||.||.||.|.||.|||||.||||
BPUM_2408___s 1481 --TGTATGTCATTCTATTAATCTGTCTCGGTCTAGTGAAGAAAGAAGAGC 1528
BSNT_04014___ 1517 TTCGCCGCATTCCCATT--ATCGGACGTCTGATCATCCGATAA 1557
|.||||||| ||||.|| .|.|||.| |||.|| ||.
BPUM_2408___s 1529 TGCGCCGCA-TCCCGTTGATTGGGAAG-CTGCTC------TAG 1563
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