Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04011 and BPUM_2406
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:31
# Commandline: needle
# -asequence dna-align/BSNT_04011___secDF.1.24716.seq
# -bsequence dna-align/BPUM_2406___secDF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04011___secDF-BPUM_2406___secDF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04011___secDF-BPUM_2406___secDF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04011___secDF
# 2: BPUM_2406___secDF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2256
# Identity: 1655/2256 (73.4%)
# Similarity: 1655/2256 (73.4%)
# Gaps: 69/2256 ( 3.1%)
# Score: 5875.0
#
#
#=======================================
BSNT_04011___ 1 ATGAAAAAAGGACGCTTGATTGCGTTTTTCCTTTTCGTTCTATTGATCGG 50
|||||||||||.|||.|..|||||||||||.|..|.|||||.||.|||||
BPUM_2406___s 1 ATGAAAAAAGGGCGCATTCTTGCGTTTTTCTTAGTGGTTCTGTTAATCGG 50
BSNT_04011___ 51 CACGGGCTTGGGC-TACTTTACGAAGCCTGCCGCTAACAATATTACGTTA 99
.||.|||.|.||| ||| |.||.|||||||..||.||..||||.|||.||
BPUM_2406___s 51 AACTGGCGTAGGCTTAC-TAACAAAGCCTGTTGCGAAAGATATGACGCTA 99
BSNT_04011___ 100 GGATTGGATTTGCAAGGCGGATTTGAGGTGCTGTATGATGTACAGCCTGT 149
||..|||||||.||.||.||||||||.||.||||||||||||||.||.||
BPUM_2406___s 100 GGGCTGGATTTACAGGGTGGATTTGAAGTCCTGTATGATGTACATCCAGT 149
BSNT_04011___ 150 AAAAAAAGGTGACAAAATCACAAA-AGACGTTCTGGTCAGCACAGTAGAG 198
.|||||||..|||||.||.||||| || .||.||.|||||.|||||.|||
BPUM_2406___s 150 GAAAAAAGAGGACAAGATTACAAATAG-TGTCCTCGTCAGTACAGTGGAG 198
BSNT_04011___ 199 GCATTGAACCGCCGGGCCAATGTTCTCGGTGTCAGCGAACCGAACATCCA 248
||.||||||||..|.||||||||.||.|||||.||.||.|||||||||..
BPUM_2406___s 199 GCTTTGAACCGAAGAGCCAATGTGCTAGGTGTAAGTGAGCCGAACATCTC 248
BSNT_04011___ 249 AATTGAAGGGAATAACCGGATTCGCGTTCAGCTCGCTGGTGTGACAAACC 298
.||||||||.||.||.||.||.||.||.|||||.||.||.||.|.|.|.|
BPUM_2406___s 249 GATTGAAGGCAACAATCGTATCCGTGTGCAGCTTGCAGGAGTAAAAGATC 298
BSNT_04011___ 299 AAAACAGAGCGCGTGAAATTCTGGCGACTGAAGCGCAGCTTTCTTTCAGA 348
||||.|||||..|.||.|||||..|.||||||||.|||||.||.||||||
BPUM_2406___s 299 AAAATAGAGCTAGGGAGATTCTTTCCACTGAAGCACAGCTATCCTTCAGA 348
BSNT_04011___ 349 GATACGAATGACAAAGAATTGCTGAATGGCTCTGACCTCGTCGAAAACGG 398
|||||||||||.||||||.|.||.||.||..|||||||.|||||||||.|
BPUM_2406___s 349 GATACGAATGATAAAGAACTCCTAAACGGGGCTGACCTAGTCGAAAACAG 398
BSNT_04011___ 399 AGCTAAACAAACGTATGATGCCA---AAACAAATGAACCGATTGTCAGCA 445
.||.||||||||.| .|| ||||.|||||.||.|||||.|...
BPUM_2406___s 399 TGCAAAACAAACAT------TCAGTCAAACGAATGAGCCAATTGTGACGG 442
BSNT_04011___ 446 TTAAACTGAAAGATGCTGATAAATTCGGCGAAGTGACCAAAAAGGTCATG 495
|||||||.||.|||||..|.|||||.||.||.||.||.|.|||.||...|
BPUM_2406___s 443 TTAAACTAAAGGATGCGAAAAAATTTGGTGACGTCACAAGAAAAGTAGCG 492
BSNT_04011___ 496 AAAATGGCGCCAAACAACCAGCTTGTTATTTGGATGGATTACGAAAAAGG 545
...||||||||.||.|||||||||||.||||||.|.||||||.|.|||||
BPUM_2406___s 493 GCGATGGCGCCGAATAACCAGCTTGTCATTTGGCTTGATTACAACAAAGG 542
BSNT_04011___ 546 GGACTCATTTAAAAAAGAGGT-TCAAAA--AGAGCACCCTAAATATGTAT 592
.||.||.||.||||||||.|| |||||| |||.||| ||.|||||.|
BPUM_2406___s 543 AGATTCCTTCAAAAAAGAAGTCTCAAAATCAGACCAC---AAGTATGTCT 589
BSNT_04011___ 593 CCGCCCCAAATGT-AAGTAAGGAATTAAACACAACTGACGTTACAATTGA 641
|.||.||.||||| ||..|||.|||| ||||..|.||||||...||||||
BPUM_2406___s 590 CTGCACCGAATGTGAATCAAGAAATT-AACAGCAGTGACGTGCAAATTGA 638
BSNT_04011___ 642 AGGGCAATTTACGGTTCAAGAAGCAAAAGATTTAGCCAGCATTTTAAACG 691
||||.|||||||.||.|||||.||||||||..|.||.||.||||||||.|
BPUM_2406___s 639 AGGGAAATTTACTGTCCAAGAGGCAAAAGACCTTGCTAGTATTTTAAATG 688
BSNT_04011___ 692 CAGGCGCACTTCCTGTGAAACTGACTGAAAAGTATTCGACATCAGTAGGC 741
|.||.|||.|.||.||||||.|.|||||||||||.||.||||||||..|.
BPUM_2406___s 689 CTGGGGCATTGCCAGTGAAATTAACTGAAAAGTACTCCACATCAGTGAGT 738
BSNT_04011___ 742 GCACAATTCGGCCAGCAGGCTCTCCATGATACGGTGTTTGCCGGTATTGT 791
||.||||||||..|.|||||..|..||||.||.||.|||||.||.|||||
BPUM_2406___s 739 GCGCAATTCGGTGAACAGGCATTAAATGAAACTGTTTTTGCAGGGATTGT 788
BSNT_04011___ 792 CGGTATTGCAATTATTTTCTTATTTATGCTTTTCTATTACCGTCTGCCGG 841
.||.|||||..|.|||||||||||.||||||||.||||||||..|.||.|
BPUM_2406___s 789 GGGAATTGCCCTCATTTTCTTATTCATGCTTTTTTATTACCGAATACCTG 838
BSNT_04011___ 842 GATTAATCGCGGTGATTACGCTATCTGTTTATATCTACATTACACTCCAG 891
|..|.||.||.||.||||||.||||....||||||||.|||||..|.|||
BPUM_2406___s 839 GTCTTATTGCTGTTATTACGTTATCAACGTATATCTATATTACTTTACAG 888
BSNT_04011___ 892 ATCTTTGACTGGATGAATGCCGTACTCACGCTTCCGGGAATTGCCGCTCT 941
.|.||||||||||||..|||.||.||.||.|||||.||||||||.||..|
BPUM_2406___s 889 GTATTTGACTGGATGGGTGCTGTTCTGACACTTCCTGGAATTGCGGCGTT 938
BSNT_04011___ 942 CATTTTAGGTGTCGGGATGGCTGTTGACGCCAACATTATTACCTATGAGC 991
.|||.|.||.||.||||||||.|||||.||||||||.||.||.|||||.|
BPUM_2406___s 939 GATTCTTGGAGTAGGGATGGCGGTTGATGCCAACATCATCACATATGAAC 988
BSNT_04011___ 992 GGATTAAAGAAGAGCTCAAGCTAGGAAAGTCAGTCCGCTCTGCCTTCCGT 1041
|.||.|||||.|||||.|||||.||.||.||.|||||.|||||.|||.|.
BPUM_2406___s 989 GAATCAAAGAGGAGCTTAAGCTCGGTAAATCTGTCCGTTCTGCTTTCAGG 1038
BSNT_04011___ 1042 TCAGGAAACAGACGGTCATTTGCGACGATTTTTGACGCGAATATTACAAC 1091
|||||||||.|.||.||||||||.||.||.|||||.||.||..|.||.|.
BPUM_2406___s 1039 TCAGGAAACCGCCGATCATTTGCAACCATCTTTGATGCAAACTTAACGAG 1088
BSNT_04011___ 1092 CATTATTGCAGCGGTTGTGCTCTTTATCTTTGGGACAAGCTCTGTTAAAG 1141
.||||||||||.||..||.||.||..|||||||||||||.|||||.||||
BPUM_2406___s 1089 TATTATTGCAGGGGGCGTCCTTTTCTTCTTTGGGACAAGTTCTGTAAAAG 1138
BSNT_04011___ 1142 GGTTTGCGACAATGCTGATCCTATCGATTTTGACAAGCTTTATCACTGCC 1191
||||||||||.|||||||||||.||.|||||.|||||||||||.||.||.
BPUM_2406___s 1139 GGTTTGCGACTATGCTGATCCTTTCCATTTTAACAAGCTTTATTACGGCT 1188
BSNT_04011___ 1192 GTTTTCTTATCGAGATTTCTCCTCGCTCTCCTTGTGGAAAGCAGATGGCT 1241
||.|||.||||.|||||.||.||.|.|||.||||||||||||.|...|||
BPUM_2406___s 1189 GTATTCCTATCAAGATTCCTTCTTGGTCTGCTTGTGGAAAGCCGCGCGCT 1238
BSNT_04011___ 1242 TGATCGGAAAAAAGGCTGGTTTGGTGTCAATAAGAAACATATCATGGATA 1291
.|||||.||.||||||||||||||||||..|.|.|||.|.||.||.||||
BPUM_2406___s 1239 CGATCGCAAGAAAGGCTGGTTTGGTGTCCGTCAAAAAGACATTATCGATA 1288
BSNT_04011___ 1292 TTCAGGATACGGATGAAAATACAGAGCCGCATACGCCATTCCAAAAATGG 1341
||||.||.||....||||||||.||.||..|.||.|||||..|.||||||
BPUM_2406___s 1289 TTCATGAAACAACAGAAAATACTGAACCAAAAACACCATTTGATAAATGG 1338
BSNT_04011___ 1342 GATTTCACGAGCAAACGCAAATACTTCTTTATTTTCTCCAGTGCAGTCAC 1391
|||||....|||||.||.|||...|||.|.||||||||.|..||..|.||
BPUM_2406___s 1339 GATTTTGTCAGCAAGCGAAAAGGTTTCATGATTTTCTCAATAGCCATTAC 1388
BSNT_04011___ 1392 GGTTGCCGGGATTATTATCCT---GCTTGTGTTCAGGCTGAATCTTGGCA 1438
..||||.||.|||||..|||| |.|| ||||..||.|||...||.|
BPUM_2406___s 1389 CATTGCGGGAATTATCGTCCTTTCGATT---TTCAAACTCAATGCGGGTA 1435
BSNT_04011___ 1439 TTGACTTTGCTAGCGGTGCACGGATTGAAGTGCAAAGCGACCATAAGCTG 1488
||||||||||.||.|||.||.|..|.||..|.|||||.||||||||||||
BPUM_2406___s 1436 TTGACTTTGCAAGTGGTACAAGAGTAGACATTCAAAGTGACCATAAGCTG 1485
BSNT_04011___ 1489 ACAACAGAGCAAGTTGAGAAGGATTTT---GAATCTCTGGGTATGGACCC 1535
.||||.|..|||.|.|||.|.||.||| .||| |.|.|.|.||..|
BPUM_2406___s 1486 TCAACTGCTCAAATCGAGCAAGACTTTCACAAAT---TAGATCTTGATAC 1532
BSNT_04011___ 1536 TGATACTGTAGT----TCT-GTCAGGCGAAAAGAGCAATATC--GGTGTT 1578
.||||.|||.|| ||| |||| ||||| ||.||| |..|..
BPUM_2406___s 1533 AGATAGTGTTGTATTATCTGGTCA----AAAAG---AAAATCAAGCAGCG 1575
BSNT_04011___ 1579 GCCCGTTTTGTCGGGGTGCCAGATAAAGAAACCATAGCAAAAGTAAAAAC 1628
||.||.|||||.||.||||||.|||||||||..||.|||.||||.|||..
BPUM_2406___s 1576 GCACGATTTGTTGGTGTGCCAAATAAAGAAAAAATTGCAGAAGTGAAAGA 1625
BSNT_04011___ 1629 GTATTTTAAAGACAAATACGGATCAGAGCCAAATGTCAGCACAGTTTCAC 1678
.||.||||||||.||.||.|||.||||.||.||.||||||||.||.||.|
BPUM_2406___s 1626 TTACTTTAAAGATAAGTATGGAACAGAACCGAACGTCAGCACGGTGTCTC 1675
BSNT_04011___ 1679 CGACAGTCGGTAAGGAGCTGGCAAGAAATGCGCTGTACGCAGTTGCTATA 1728
|.||.|||||.||.||.||.|||.|.|||||..|.||.||..|....||.
BPUM_2406___s 1676 CTACGGTCGGAAAAGAACTTGCACGTAATGCTTTATATGCCATCATCATT 1725
BSNT_04011___ 1729 GCTTCTATTGGCATCATTATTTACGTTTCAATCCGATTCGAATACAAAAT 1778
|||||.|||||.|||||||||||.|||||.||.||.||.|||||.||.||
BPUM_2406___s 1726 GCTTCGATTGGGATCATTATTTATGTTTCCATTCGGTTTGAATATAAGAT 1775
BSNT_04011___ 1779 GGCGATTGCTGCCATCGCCTCATTGCTATATGACGCATTCTTTATCGTCA 1828
|||.|||||.||.||.||.||..|..|||||||.||||||||.||.||..
BPUM_2406___s 1776 GGCCATTGCAGCGATTGCTTCCCTTTTATATGATGCATTCTTCATTGTGG 1825
BSNT_04011___ 1829 CGTTCTTCAGTATTACAAGGCTTGAGGTAGATGTTACGTTCATCGCGGCC 1878
|.|||||.|||||||||.|..|.|||||.|||||.||.|||||.|||||.
BPUM_2406___s 1826 CATTCTTTAGTATTACACGATTAGAGGTCGATGTGACCTTCATTGCGGCG 1875
BSNT_04011___ 1879 ATCTTGACGATAATCGGGTATTCCATTAACGATACAATCGTTACATTTGA 1928
|||.|.|||.|.|||||.|||||.||.||.||.||.|||||.||.||.||
BPUM_2406___s 1876 ATCCTCACGGTGATCGGATATTCGATCAATGACACGATCGTGACGTTCGA 1925
BSNT_04011___ 1929 CAGGGTCCGCGAGCATATGAAAAAGCGCAAGCCGAAAACATTTGCCGATC 1978
.|||||.||.|||||.|||||.||.||.||.||.|||||..|.|..||||
BPUM_2406___s 1926 TAGGGTTCGTGAGCAAATGAAGAAACGTAAACCAAAAACGGTAGAAGATC 1975
BSNT_04011___ 1979 TGAACC--ATATTGTAAACCTGAGCCTGCAGCAAACCTTTACACGTTCAA 2026
| |.| |.||.||.|||.||||..|.|||||||||||||||.|.||.|
BPUM_2406___s 1976 T--ATCTTACATCGTCAACTTGAGTTTACAGCAAACCTTTACAAGATCTA 2023
BSNT_04011___ 2027 TTAACACTGTATTAACTGTTGTGATTGTTGTTGTGACATTGCTGATCTTT 2076
|.||.||.|||.|.|||||.||.||||||||..|..||.||||.|||||.
BPUM_2406___s 2024 TCAATACGGTACTCACTGTCGTAATTGTTGTGATCGCACTGCTTATCTTC 2073
BSNT_04011___ 2077 GGAGCATCTTCTATTACTAACTTCTCAATTGCTTTATTGGTCGGGCTGTT 2126
|||.|..|.||.|||||.||||||||..|.||.|||.|.|||||.|||||
BPUM_2406___s 2074 GGATCGGCGTCGATTACAAACTTCTCCCTCGCCTTACTTGTCGGTCTGTT 2123
BSNT_04011___ 2127 AACAGGCGTTTATTCTTCTCTATACATTGCCGCACAAATTTGGCTTGCAT 2176
||||||.||.||.||.||||||||.||.||.|||||||||||||||...|
BPUM_2406___s 2124 AACAGGGGTGTACTCATCTCTATATATCGCAGCACAAATTTGGCTTATGT 2173
BSNT_04011___ 2177 GGAAAGGAAGAGAACTGAAAA--------AAGATT----CGGCGCAA--- 2211
|||||||..|.||.||||||| |||||| |.|.||||
BPUM_2406___s 2174 GGAAAGGCCGTGATCTGAAAAAGCCGGCGAAGATTGATACTGAGCAAGAT 2223
BSNT_04011___ 2212 ---TAA 2214
|||
BPUM_2406___s 2224 ATTTAA 2229
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