Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04004 and BPUM_2401
See
Amino acid alignment /
Visit
BSNT_04004 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:30
# Commandline: needle
# -asequence dna-align/BSNT_04004___relA.1.24716.seq
# -bsequence dna-align/BPUM_2401___relA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04004___relA-BPUM_2401___relA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04004___relA-BPUM_2401___relA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04004___relA
# 2: BPUM_2401___relA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2223
# Identity: 1744/2223 (78.5%)
# Similarity: 1744/2223 (78.5%)
# Gaps: 30/2223 ( 1.3%)
# Score: 6776.0
#
#
#=======================================
BSNT_04004___ 1 ATGGCGAACGAACAAGTATTGACTGCCGAGCAAGTTATAGATAAAGC--G 48
|||||||||||||||||.||.||.||..||||.||.||.||.||.|| |
BPUM_2401___r 1 ATGGCGAACGAACAAGTTTTAACGGCGCAGCAGGTCATTGACAAGGCAAG 50
BSNT_04004___ 49 CGCAGCTATCTATCTGATGAGCATATCGCATTTGTCGAAAAAGCATATCT 98
.|.| ||.||.||.|.|||.|||||...||||.|.||...|||||||..
BPUM_2401___r 51 AGAA--TACCTGTCCGCTGAACATATTCAATTTATAGAGCGAGCATATGA 98
BSNT_04004___ 99 GTACGCTGAAGATGCTCATCGCGAGCAATACCGCAAATCGGGCGAGCCAT 148
.||.||||||.||||.|||...|||||||||||.||.||.||.|||||.|
BPUM_2401___r 99 ATATGCTGAAAATGCACATAAGGAGCAATACCGGAAGTCTGGTGAGCCTT 148
BSNT_04004___ 149 ATATTATTCATCCGATTCAGGTTGCGGGGATTCTCGTCGATCTTGAAATG 198
|||||||.|||||.|||||.||.|||||||||||.||.||.|||||||||
BPUM_2401___r 149 ATATTATCCATCCAATTCAAGTGGCGGGGATTCTTGTTGACCTTGAAATG 198
BSNT_04004___ 199 GACCCTTCCACAATCGCGGGCGGATTTTTGCACGATGTCGTGGAAGATAC 248
|||||.||.||.||.||.|||||.||..||||||||||.||.||.|||||
BPUM_2401___r 199 GACCCATCGACCATTGCAGGCGGTTTCCTGCACGATGTTGTTGAGGATAC 248
BSNT_04004___ 249 AGATGTGACGCTCGATGACCTGAAAGAAGCATTTT-CCGAAGAAGTGGCA 297
|||||||||..|..|.||..|.|||| |||||||| .|||||||||.||.
BPUM_2401___r 249 AGATGTGACATTACAGGATTTAAAAG-AGCATTTTAACGAAGAAGTTGCG 297
BSNT_04004___ 298 ATGCTTGTAGACGGCGTAACGAAACTCGGCAAAATTAAATATAAATCTCA 347
||||||||.||.||.|||||.||.|||||.||.||||||||||||||.||
BPUM_2401___r 298 ATGCTTGTTGATGGTGTAACAAAGCTCGGGAAGATTAAATATAAATCACA 347
BSNT_04004___ 348 AGAGGAACAGCAGGCGGAAAATCATCGCAAAATGTTTGTCGCTATGGCTC 397
|||.|||||||||||.|||||.|||||.|||||||||||.||.|||||.|
BPUM_2401___r 348 AGAAGAACAGCAGGCCGAAAACCATCGAAAAATGTTTGTAGCAATGGCGC 397
BSNT_04004___ 398 AAGATATCAGGGTCATATTGATCAAGCTGGCGGATCGTCTTCACAATATG 447
|.|||||..|.||.||.|||||.||.|||||.||||||.|.|||||||||
BPUM_2401___r 398 AGGATATACGCGTGATCTTGATTAAACTGGCAGATCGTTTGCACAATATG 447
BSNT_04004___ 448 CGGACACTGAAACATCTGCCTCAGGAAAAACAGCGGAGAATCTCCAATGA 497
.|.||.||.|||||.||.|||||||||||.|||||.|||||.||.|||||
BPUM_2401___r 448 AGAACGCTCAAACACCTTCCTCAGGAAAAGCAGCGTAGAATTTCAAATGA 497
BSNT_04004___ 498 AACGCTGGAAATTTTTGCTCCTTTGGCGCATCGTCTCGGGATTTCAAAAA 547
|||.||.|||||||||||.||..|.|||||..|..|.|||||||||||.|
BPUM_2401___r 498 AACCCTTGAAATTTTTGCACCGCTTGCGCACAGATTAGGGATTTCAAAGA 547
BSNT_04004___ 548 TTAAGTGGGAATTGGAAGATACGGCGCTCCGTTATTTGAACCCTCAACAA 597
||||||||||..|.||||||||.||.||||||||.||.||.||.||.|||
BPUM_2401___r 548 TTAAGTGGGAGCTTGAAGATACAGCACTCCGTTACTTAAATCCGCAGCAA 597
BSNT_04004___ 598 TATTACAGAATTGTCAACCTCATGAAGAAGAAACGTGCAGAACGTGAGCT 647
||||||.|.||.||.||.|||||||||...|||||.||.|||||.|||..
BPUM_2401___r 598 TATTACCGGATCGTGAATCTCATGAAGCGCAAACGAGCGGAACGAGAGGA 647
BSNT_04004___ 648 TTATGTTGATGAGGTTGTCAATGAAGTGAAGAAACGTGTCGAAGAAGTAA 697
.||..|.||.|||||||||||||||||.||..|.|||||...|||.||||
BPUM_2401___r 648 ATACTTGGACGAGGTTGTCAATGAAGTAAAAGATCGTGTGTCAGAGGTAA 697
BSNT_04004___ 698 ATATCAAGGCTGACTTCTCGGGACGCCCGAAACATATTTACAGCATTTAT 747
|.|||||||||||.||.||.|||.|.||.||.||||||||.||.||||||
BPUM_2401___r 698 ACATCAAGGCTGAATTTTCCGGAAGACCAAAGCATATTTATAGTATTTAT 747
BSNT_04004___ 748 CGAAAAATGGTGCTGCAAAATAAGCAATTCAATGAGATTTACGATTTGCT 797
||.||||||||..|||||||||||||.||.|||||.|||||.|||.||||
BPUM_2401___r 748 CGCAAAATGGTCTTGCAAAATAAGCAGTTTAATGAAATTTATGATCTGCT 797
BSNT_04004___ 798 GGCTGTCCGTATTCTTGTGAACAGCATAAAGGACTGCTACGCGGTGCTTG 847
|||.||.||||||.|.||..|||||||.||.||||||||.||.|||||||
BPUM_2401___r 798 GGCGGTTCGTATTTTGGTTGACAGCATTAAAGACTGCTATGCCGTGCTTG 847
BSNT_04004___ 848 GCATCATTCACACATGCTGGAAACCGATGCCCGGCAGATTCAAAGATTAT 897
|.||.||.||.|||||||||||.||||||||.||.||.||.||.||||||
BPUM_2401___r 848 GGATTATCCATACATGCTGGAAGCCGATGCCAGGTAGGTTTAAGGATTAT 897
BSNT_04004___ 898 ATCGCAATGCCGAAGCCGAATATGTATCAATCGCTTCATACAACGGTTAT 947
||.||.|||||.|||||.||.|||||.||||||||.||||||||.||.||
BPUM_2401___r 898 ATTGCCATGCCAAAGCCCAACATGTACCAATCGCTCCATACAACAGTGAT 947
BSNT_04004___ 948 TGGGCCTAAAGGCGATCCGCTTGAAGTGCAGATCCGCACCTTTGAAATGC 997
||||||.|||||.||.|||||||||||.||||||||.||..|.|||||||
BPUM_2401___r 948 TGGGCCAAAAGGAGACCCGCTTGAAGTTCAGATCCGTACAGTGGAAATGC 997
BSNT_04004___ 998 ATGAAATAGCGGAATACGGGGTTGCGGCTCACTGGGCTTATAAAGAAGGA 1047
|.|||||.||.||.|||||..||||.||.||||||||.||.|||||||||
BPUM_2401___r 998 ACGAAATCGCAGAGTACGGAATTGCTGCGCACTGGGCATACAAAGAAGGA 1047
BSNT_04004___ 1048 AAAG---CAGC-----CAATGAAGG-TGCAACCTTTGAGAAAAAGCTTTC 1088
|||| |||| |||.|.||| .||...|||..||||.|||||.||
BPUM_2401___r 1048 AAAGAGTCAGCAGAATCAACGGAGGAAGCGGTCTTCCAGAAGAAGCTCTC 1097
BSNT_04004___ 1089 TTGGTTCCGTGAAATTTTAGAATTTCAAAATGAATCGACAGATGCAGAAG 1138
||||||..|.|||||..|.|||||.|||||||||||.|||||||||||||
BPUM_2401___r 1098 TTGGTTTAGAGAAATCCTTGAATTCCAAAATGAATCTACAGATGCAGAAG 1147
BSNT_04004___ 1139 AATTTATGGAATCGCTCAAAATTGATTTGTTCTCTGATATGGTGTATGTC 1188
||||||||||||||.|.|||||.|||.||||||||||||||||||.||||
BPUM_2401___r 1148 AATTTATGGAATCGTTAAAAATCGATCTGTTCTCTGATATGGTGTTTGTC 1197
BSNT_04004___ 1189 TTTACGCCAAAAGGAGATGTAATCGAGCTTCCGTCCGGTTCTGTTCCGAT 1238
|||||.|||||||||||.||.||.||.||.||.||.|||||.||||||||
BPUM_2401___r 1198 TTTACACCAAAAGGAGACGTCATTGAACTGCCATCAGGTTCCGTTCCGAT 1247
BSNT_04004___ 1239 TGATTTTTCTTACCGGATTCACTCTGAAATCGGCAATAAAACAATCGGTG 1288
|||.|||||||||||.||||||||.|||||.||.||||||||.|||||||
BPUM_2401___r 1248 TGACTTTTCTTACCGCATTCACTCGGAAATTGGGAATAAAACGATCGGTG 1297
BSNT_04004___ 1289 CCAAAGTAAACGGAAAAATGGTTACGCTTGACCATAAGCTTCGGACAGGT 1338
|.||.||.||||||||.|||||.|||||.||.|||||..|...|||||||
BPUM_2401___r 1298 CGAAGGTCAACGGAAAGATGGTCACGCTCGATCATAAATTGAAGACAGGT 1347
BSNT_04004___ 1339 GATATCGTTGAAATTCTCACCTCTAAGCATTCCTACGGTCCGAGCCAGGA 1388
||.||..||||||||||.||.||.|||||...|||.||.||.||.|||||
BPUM_2401___r 1348 GACATTATTGAAATTCTGACATCAAAGCACAGCTATGGGCCAAGTCAGGA 1397
BSNT_04004___ 1389 TTGGGTGAAGCTTGCCCAAACATCCCAAGCGAAGCATAAAATCCGTCAAT 1438
||||||.||.|||||||||||.||||||||||||||.||.|||.|.||.|
BPUM_2401___r 1398 TTGGGTCAAACTTGCCCAAACCTCCCAAGCGAAGCACAAGATCAGACAGT 1447
BSNT_04004___ 1439 TCTTTAAGAAACAGCGGCGTGAAGAAAATGTCGAAAAAGGCCGTGAGTTG 1488
|.||.||.||||||||.||||||||||||||||||||||||||.||..|.
BPUM_2401___r 1448 TTTTCAAAAAACAGCGCCGTGAAGAAAATGTCGAAAAAGGCCGAGAACTC 1497
BSNT_04004___ 1489 GTCGAAAAAGAAATTAAAAACCTGGATTTTGAATTGAAGGATGTTTTAAC 1538
||.||.||||||||.||||||||.||.|||||..|.||.||..||.|.||
BPUM_2401___r 1498 GTGGAGAAAGAAATCAAAAACCTTGAGTTTGATGTCAAAGACATTCTGAC 1547
BSNT_04004___ 1539 GCCGGAGAATATTCAAAAGGTTGCTGACAAATTTAATTTCTCAAATGAAG 1588
..|.||.||..|.|||||.||.|||||||||||||||||.|||||.||||
BPUM_2401___r 1548 AGCTGAAAACCTGCAAAAAGTGGCTGACAAATTTAATTTTTCAAACGAAG 1597
BSNT_04004___ 1589 AGGATATGTACGCGGCGGTCGGTTACAACGGCATTACTGCTCTGCAGGTG 1638
||||.|||||.||.|||||.|||||.|||||.||||||||.||.||.||.
BPUM_2401___r 1598 AGGACATGTATGCAGCGGTTGGTTATAACGGAATTACTGCACTCCAAGTC 1647
BSNT_04004___ 1639 GCGAACCGCCTAACAGAAAAAGAGAGAAAGCAGCGCGATCAGGAAGAACA 1688
||.||.||..||||.||||||||.|||||.||..|.|||||.||||||||
BPUM_2401___r 1648 GCCAATCGTTTAACTGAAAAAGAAAGAAAACAAAGAGATCAAGAAGAACA 1697
BSNT_04004___ 1689 GGAAAAGATCGTTCAGGAAGTTACTGGGGAACCTAAGCCGTA-CCCGCAA 1737
.|||||.|..|||||.|||||.||||..||.||.|||.|.|| |.||
BPUM_2401___r 1698 AGAAAAAACGGTTCAAGAAGTGACTGTAGAGCCAAAGACATATCACG--- 1744
BSNT_04004___ 1738 GGAAGAAAACGGGAAGCTGGCGTTCGTGTCAAGGGCATCGACAACCTCCT 1787
||||| |||||.|||||.|||||..|.|||||.||.||.||.|||||.||
BPUM_2401___r 1745 GGAAG-AAACGAGAAGCAGGCGTAAGAGTCAAAGGGATAGATAACCTGCT 1793
BSNT_04004___ 1788 TGTCCGTTTATCAAAATGCTGCAATCCTGTGCCAGGTGATGATATTGTCG 1837
||||||.|||||.||.|||||.||.|||||.||.||||||...|||||.|
BPUM_2401___r 1794 TGTCCGCTTATCTAAGTGCTGTAACCCTGTTCCTGGTGATAGCATTGTTG 1843
BSNT_04004___ 1838 GCTTTATCACAAAAGGCAGAGGGGTTTCGGTCCATCGCGAAGACTGTCCG 1887
|.|||||.||.||||||.||||.||.||.||.||.||.||.|||||||||
BPUM_2401___r 1844 GTTTTATTACGAAAGGCCGAGGCGTATCTGTTCACCGTGATGACTGTCCG 1893
BSNT_04004___ 1888 AATGTCAAAAC--GAATGAAGCCCAAGAGCGGCTGATCCCGGTAGAGTGG 1935
||.||.||||| || |||||.||.||.|||.|.|||||||||||||||
BPUM_2401___r 1894 AACGTGAAAACAGGA--GAAGCGCAGGAACGGTTAATCCCGGTAGAGTGG 1941
BSNT_04004___ 1936 GAGCATGAGTCACAG---GTTCAAAAGCGCAAGGAATACAATGTTGAGAT 1982
|||||||| |||| |.||.|||.||.||.|||||||||||.||.||
BPUM_2401___r 1942 GAGCATGA---ACAGCCTGCTCGAAACCGTAAAGAATACAATGTGGAAAT 1988
BSNT_04004___ 1983 AGAGATTCTTGGGTATGACCGCCGCGGATTGCTGAACGAGGTGCTGCAGG 2032
.||.||.||.||.||||||.|.|||||.||.||.||.||||||||.||.|
BPUM_2401___r 1989 TGAAATACTAGGATATGACAGACGCGGCTTACTCAATGAGGTGCTTCAAG 2038
BSNT_04004___ 2033 CAGTGAATGAAACGAAAACAAATATTTCATCTGTCTCTGGCAAATCGGAT 2082
||||.||.|||||||||||.||.||.||.||.||.|||||.||.||.|||
BPUM_2401___r 2039 CAGTCAACGAAACGAAAACGAACATCTCGTCAGTTTCTGGTAAGTCTGAT 2088
BSNT_04004___ 2083 CGCAATAAAGTGGCAACCATTCATATGGCGATTTTTATTCAGAATATCAA 2132
||.||.||||||||.||.||||||||||||||.|||||.||.||.||.||
BPUM_2401___r 2089 CGTAACAAAGTGGCGACGATTCATATGGCGATCTTTATCCAAAACATTAA 2138
BSNT_04004___ 2133 TCACTTGCACAAAGTCGTCGAGCGTATTAAACAGATTAGAGATATCTACT 2182
.||.|||||||||||.||.||.||.||||||||.||.|.|||.||.||||
BPUM_2401___r 2139 CCATTTGCACAAAGTGGTAGAACGCATTAAACAAATCAAAGACATTTACT 2188
BSNT_04004___ 2183 CTGTGCGCCGCGTCATGAACTAA 2205
||||.|||||..|||||||.||.
BPUM_2401___r 2189 CTGTTCGCCGATTCATGAATTAG 2211
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.