Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04004 and BPUM_2401

See Amino acid alignment / Visit BSNT_04004 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:30
# Commandline: needle
#    -asequence dna-align/BSNT_04004___relA.1.24716.seq
#    -bsequence dna-align/BPUM_2401___relA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04004___relA-BPUM_2401___relA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04004___relA-BPUM_2401___relA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04004___relA
# 2: BPUM_2401___relA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2223
# Identity:    1744/2223 (78.5%)
# Similarity:  1744/2223 (78.5%)
# Gaps:          30/2223 ( 1.3%)
# Score: 6776.0
# 
#
#=======================================

BSNT_04004___      1 ATGGCGAACGAACAAGTATTGACTGCCGAGCAAGTTATAGATAAAGC--G     48
                     |||||||||||||||||.||.||.||..||||.||.||.||.||.||  |
BPUM_2401___r      1 ATGGCGAACGAACAAGTTTTAACGGCGCAGCAGGTCATTGACAAGGCAAG     50

BSNT_04004___     49 CGCAGCTATCTATCTGATGAGCATATCGCATTTGTCGAAAAAGCATATCT     98
                     .|.|  ||.||.||.|.|||.|||||...||||.|.||...|||||||..
BPUM_2401___r     51 AGAA--TACCTGTCCGCTGAACATATTCAATTTATAGAGCGAGCATATGA     98

BSNT_04004___     99 GTACGCTGAAGATGCTCATCGCGAGCAATACCGCAAATCGGGCGAGCCAT    148
                     .||.||||||.||||.|||...|||||||||||.||.||.||.|||||.|
BPUM_2401___r     99 ATATGCTGAAAATGCACATAAGGAGCAATACCGGAAGTCTGGTGAGCCTT    148

BSNT_04004___    149 ATATTATTCATCCGATTCAGGTTGCGGGGATTCTCGTCGATCTTGAAATG    198
                     |||||||.|||||.|||||.||.|||||||||||.||.||.|||||||||
BPUM_2401___r    149 ATATTATCCATCCAATTCAAGTGGCGGGGATTCTTGTTGACCTTGAAATG    198

BSNT_04004___    199 GACCCTTCCACAATCGCGGGCGGATTTTTGCACGATGTCGTGGAAGATAC    248
                     |||||.||.||.||.||.|||||.||..||||||||||.||.||.|||||
BPUM_2401___r    199 GACCCATCGACCATTGCAGGCGGTTTCCTGCACGATGTTGTTGAGGATAC    248

BSNT_04004___    249 AGATGTGACGCTCGATGACCTGAAAGAAGCATTTT-CCGAAGAAGTGGCA    297
                     |||||||||..|..|.||..|.|||| |||||||| .|||||||||.||.
BPUM_2401___r    249 AGATGTGACATTACAGGATTTAAAAG-AGCATTTTAACGAAGAAGTTGCG    297

BSNT_04004___    298 ATGCTTGTAGACGGCGTAACGAAACTCGGCAAAATTAAATATAAATCTCA    347
                     ||||||||.||.||.|||||.||.|||||.||.||||||||||||||.||
BPUM_2401___r    298 ATGCTTGTTGATGGTGTAACAAAGCTCGGGAAGATTAAATATAAATCACA    347

BSNT_04004___    348 AGAGGAACAGCAGGCGGAAAATCATCGCAAAATGTTTGTCGCTATGGCTC    397
                     |||.|||||||||||.|||||.|||||.|||||||||||.||.|||||.|
BPUM_2401___r    348 AGAAGAACAGCAGGCCGAAAACCATCGAAAAATGTTTGTAGCAATGGCGC    397

BSNT_04004___    398 AAGATATCAGGGTCATATTGATCAAGCTGGCGGATCGTCTTCACAATATG    447
                     |.|||||..|.||.||.|||||.||.|||||.||||||.|.|||||||||
BPUM_2401___r    398 AGGATATACGCGTGATCTTGATTAAACTGGCAGATCGTTTGCACAATATG    447

BSNT_04004___    448 CGGACACTGAAACATCTGCCTCAGGAAAAACAGCGGAGAATCTCCAATGA    497
                     .|.||.||.|||||.||.|||||||||||.|||||.|||||.||.|||||
BPUM_2401___r    448 AGAACGCTCAAACACCTTCCTCAGGAAAAGCAGCGTAGAATTTCAAATGA    497

BSNT_04004___    498 AACGCTGGAAATTTTTGCTCCTTTGGCGCATCGTCTCGGGATTTCAAAAA    547
                     |||.||.|||||||||||.||..|.|||||..|..|.|||||||||||.|
BPUM_2401___r    498 AACCCTTGAAATTTTTGCACCGCTTGCGCACAGATTAGGGATTTCAAAGA    547

BSNT_04004___    548 TTAAGTGGGAATTGGAAGATACGGCGCTCCGTTATTTGAACCCTCAACAA    597
                     ||||||||||..|.||||||||.||.||||||||.||.||.||.||.|||
BPUM_2401___r    548 TTAAGTGGGAGCTTGAAGATACAGCACTCCGTTACTTAAATCCGCAGCAA    597

BSNT_04004___    598 TATTACAGAATTGTCAACCTCATGAAGAAGAAACGTGCAGAACGTGAGCT    647
                     ||||||.|.||.||.||.|||||||||...|||||.||.|||||.|||..
BPUM_2401___r    598 TATTACCGGATCGTGAATCTCATGAAGCGCAAACGAGCGGAACGAGAGGA    647

BSNT_04004___    648 TTATGTTGATGAGGTTGTCAATGAAGTGAAGAAACGTGTCGAAGAAGTAA    697
                     .||..|.||.|||||||||||||||||.||..|.|||||...|||.||||
BPUM_2401___r    648 ATACTTGGACGAGGTTGTCAATGAAGTAAAAGATCGTGTGTCAGAGGTAA    697

BSNT_04004___    698 ATATCAAGGCTGACTTCTCGGGACGCCCGAAACATATTTACAGCATTTAT    747
                     |.|||||||||||.||.||.|||.|.||.||.||||||||.||.||||||
BPUM_2401___r    698 ACATCAAGGCTGAATTTTCCGGAAGACCAAAGCATATTTATAGTATTTAT    747

BSNT_04004___    748 CGAAAAATGGTGCTGCAAAATAAGCAATTCAATGAGATTTACGATTTGCT    797
                     ||.||||||||..|||||||||||||.||.|||||.|||||.|||.||||
BPUM_2401___r    748 CGCAAAATGGTCTTGCAAAATAAGCAGTTTAATGAAATTTATGATCTGCT    797

BSNT_04004___    798 GGCTGTCCGTATTCTTGTGAACAGCATAAAGGACTGCTACGCGGTGCTTG    847
                     |||.||.||||||.|.||..|||||||.||.||||||||.||.|||||||
BPUM_2401___r    798 GGCGGTTCGTATTTTGGTTGACAGCATTAAAGACTGCTATGCCGTGCTTG    847

BSNT_04004___    848 GCATCATTCACACATGCTGGAAACCGATGCCCGGCAGATTCAAAGATTAT    897
                     |.||.||.||.|||||||||||.||||||||.||.||.||.||.||||||
BPUM_2401___r    848 GGATTATCCATACATGCTGGAAGCCGATGCCAGGTAGGTTTAAGGATTAT    897

BSNT_04004___    898 ATCGCAATGCCGAAGCCGAATATGTATCAATCGCTTCATACAACGGTTAT    947
                     ||.||.|||||.|||||.||.|||||.||||||||.||||||||.||.||
BPUM_2401___r    898 ATTGCCATGCCAAAGCCCAACATGTACCAATCGCTCCATACAACAGTGAT    947

BSNT_04004___    948 TGGGCCTAAAGGCGATCCGCTTGAAGTGCAGATCCGCACCTTTGAAATGC    997
                     ||||||.|||||.||.|||||||||||.||||||||.||..|.|||||||
BPUM_2401___r    948 TGGGCCAAAAGGAGACCCGCTTGAAGTTCAGATCCGTACAGTGGAAATGC    997

BSNT_04004___    998 ATGAAATAGCGGAATACGGGGTTGCGGCTCACTGGGCTTATAAAGAAGGA   1047
                     |.|||||.||.||.|||||..||||.||.||||||||.||.|||||||||
BPUM_2401___r    998 ACGAAATCGCAGAGTACGGAATTGCTGCGCACTGGGCATACAAAGAAGGA   1047

BSNT_04004___   1048 AAAG---CAGC-----CAATGAAGG-TGCAACCTTTGAGAAAAAGCTTTC   1088
                     ||||   ||||     |||.|.||| .||...|||..||||.|||||.||
BPUM_2401___r   1048 AAAGAGTCAGCAGAATCAACGGAGGAAGCGGTCTTCCAGAAGAAGCTCTC   1097

BSNT_04004___   1089 TTGGTTCCGTGAAATTTTAGAATTTCAAAATGAATCGACAGATGCAGAAG   1138
                     ||||||..|.|||||..|.|||||.|||||||||||.|||||||||||||
BPUM_2401___r   1098 TTGGTTTAGAGAAATCCTTGAATTCCAAAATGAATCTACAGATGCAGAAG   1147

BSNT_04004___   1139 AATTTATGGAATCGCTCAAAATTGATTTGTTCTCTGATATGGTGTATGTC   1188
                     ||||||||||||||.|.|||||.|||.||||||||||||||||||.||||
BPUM_2401___r   1148 AATTTATGGAATCGTTAAAAATCGATCTGTTCTCTGATATGGTGTTTGTC   1197

BSNT_04004___   1189 TTTACGCCAAAAGGAGATGTAATCGAGCTTCCGTCCGGTTCTGTTCCGAT   1238
                     |||||.|||||||||||.||.||.||.||.||.||.|||||.||||||||
BPUM_2401___r   1198 TTTACACCAAAAGGAGACGTCATTGAACTGCCATCAGGTTCCGTTCCGAT   1247

BSNT_04004___   1239 TGATTTTTCTTACCGGATTCACTCTGAAATCGGCAATAAAACAATCGGTG   1288
                     |||.|||||||||||.||||||||.|||||.||.||||||||.|||||||
BPUM_2401___r   1248 TGACTTTTCTTACCGCATTCACTCGGAAATTGGGAATAAAACGATCGGTG   1297

BSNT_04004___   1289 CCAAAGTAAACGGAAAAATGGTTACGCTTGACCATAAGCTTCGGACAGGT   1338
                     |.||.||.||||||||.|||||.|||||.||.|||||..|...|||||||
BPUM_2401___r   1298 CGAAGGTCAACGGAAAGATGGTCACGCTCGATCATAAATTGAAGACAGGT   1347

BSNT_04004___   1339 GATATCGTTGAAATTCTCACCTCTAAGCATTCCTACGGTCCGAGCCAGGA   1388
                     ||.||..||||||||||.||.||.|||||...|||.||.||.||.|||||
BPUM_2401___r   1348 GACATTATTGAAATTCTGACATCAAAGCACAGCTATGGGCCAAGTCAGGA   1397

BSNT_04004___   1389 TTGGGTGAAGCTTGCCCAAACATCCCAAGCGAAGCATAAAATCCGTCAAT   1438
                     ||||||.||.|||||||||||.||||||||||||||.||.|||.|.||.|
BPUM_2401___r   1398 TTGGGTCAAACTTGCCCAAACCTCCCAAGCGAAGCACAAGATCAGACAGT   1447

BSNT_04004___   1439 TCTTTAAGAAACAGCGGCGTGAAGAAAATGTCGAAAAAGGCCGTGAGTTG   1488
                     |.||.||.||||||||.||||||||||||||||||||||||||.||..|.
BPUM_2401___r   1448 TTTTCAAAAAACAGCGCCGTGAAGAAAATGTCGAAAAAGGCCGAGAACTC   1497

BSNT_04004___   1489 GTCGAAAAAGAAATTAAAAACCTGGATTTTGAATTGAAGGATGTTTTAAC   1538
                     ||.||.||||||||.||||||||.||.|||||..|.||.||..||.|.||
BPUM_2401___r   1498 GTGGAGAAAGAAATCAAAAACCTTGAGTTTGATGTCAAAGACATTCTGAC   1547

BSNT_04004___   1539 GCCGGAGAATATTCAAAAGGTTGCTGACAAATTTAATTTCTCAAATGAAG   1588
                     ..|.||.||..|.|||||.||.|||||||||||||||||.|||||.||||
BPUM_2401___r   1548 AGCTGAAAACCTGCAAAAAGTGGCTGACAAATTTAATTTTTCAAACGAAG   1597

BSNT_04004___   1589 AGGATATGTACGCGGCGGTCGGTTACAACGGCATTACTGCTCTGCAGGTG   1638
                     ||||.|||||.||.|||||.|||||.|||||.||||||||.||.||.||.
BPUM_2401___r   1598 AGGACATGTATGCAGCGGTTGGTTATAACGGAATTACTGCACTCCAAGTC   1647

BSNT_04004___   1639 GCGAACCGCCTAACAGAAAAAGAGAGAAAGCAGCGCGATCAGGAAGAACA   1688
                     ||.||.||..||||.||||||||.|||||.||..|.|||||.||||||||
BPUM_2401___r   1648 GCCAATCGTTTAACTGAAAAAGAAAGAAAACAAAGAGATCAAGAAGAACA   1697

BSNT_04004___   1689 GGAAAAGATCGTTCAGGAAGTTACTGGGGAACCTAAGCCGTA-CCCGCAA   1737
                     .|||||.|..|||||.|||||.||||..||.||.|||.|.|| |.||   
BPUM_2401___r   1698 AGAAAAAACGGTTCAAGAAGTGACTGTAGAGCCAAAGACATATCACG---   1744

BSNT_04004___   1738 GGAAGAAAACGGGAAGCTGGCGTTCGTGTCAAGGGCATCGACAACCTCCT   1787
                     ||||| |||||.|||||.|||||..|.|||||.||.||.||.|||||.||
BPUM_2401___r   1745 GGAAG-AAACGAGAAGCAGGCGTAAGAGTCAAAGGGATAGATAACCTGCT   1793

BSNT_04004___   1788 TGTCCGTTTATCAAAATGCTGCAATCCTGTGCCAGGTGATGATATTGTCG   1837
                     ||||||.|||||.||.|||||.||.|||||.||.||||||...|||||.|
BPUM_2401___r   1794 TGTCCGCTTATCTAAGTGCTGTAACCCTGTTCCTGGTGATAGCATTGTTG   1843

BSNT_04004___   1838 GCTTTATCACAAAAGGCAGAGGGGTTTCGGTCCATCGCGAAGACTGTCCG   1887
                     |.|||||.||.||||||.||||.||.||.||.||.||.||.|||||||||
BPUM_2401___r   1844 GTTTTATTACGAAAGGCCGAGGCGTATCTGTTCACCGTGATGACTGTCCG   1893

BSNT_04004___   1888 AATGTCAAAAC--GAATGAAGCCCAAGAGCGGCTGATCCCGGTAGAGTGG   1935
                     ||.||.|||||  ||  |||||.||.||.|||.|.|||||||||||||||
BPUM_2401___r   1894 AACGTGAAAACAGGA--GAAGCGCAGGAACGGTTAATCCCGGTAGAGTGG   1941

BSNT_04004___   1936 GAGCATGAGTCACAG---GTTCAAAAGCGCAAGGAATACAATGTTGAGAT   1982
                     ||||||||   ||||   |.||.|||.||.||.|||||||||||.||.||
BPUM_2401___r   1942 GAGCATGA---ACAGCCTGCTCGAAACCGTAAAGAATACAATGTGGAAAT   1988

BSNT_04004___   1983 AGAGATTCTTGGGTATGACCGCCGCGGATTGCTGAACGAGGTGCTGCAGG   2032
                     .||.||.||.||.||||||.|.|||||.||.||.||.||||||||.||.|
BPUM_2401___r   1989 TGAAATACTAGGATATGACAGACGCGGCTTACTCAATGAGGTGCTTCAAG   2038

BSNT_04004___   2033 CAGTGAATGAAACGAAAACAAATATTTCATCTGTCTCTGGCAAATCGGAT   2082
                     ||||.||.|||||||||||.||.||.||.||.||.|||||.||.||.|||
BPUM_2401___r   2039 CAGTCAACGAAACGAAAACGAACATCTCGTCAGTTTCTGGTAAGTCTGAT   2088

BSNT_04004___   2083 CGCAATAAAGTGGCAACCATTCATATGGCGATTTTTATTCAGAATATCAA   2132
                     ||.||.||||||||.||.||||||||||||||.|||||.||.||.||.||
BPUM_2401___r   2089 CGTAACAAAGTGGCGACGATTCATATGGCGATCTTTATCCAAAACATTAA   2138

BSNT_04004___   2133 TCACTTGCACAAAGTCGTCGAGCGTATTAAACAGATTAGAGATATCTACT   2182
                     .||.|||||||||||.||.||.||.||||||||.||.|.|||.||.||||
BPUM_2401___r   2139 CCATTTGCACAAAGTGGTAGAACGCATTAAACAAATCAAAGACATTTACT   2188

BSNT_04004___   2183 CTGTGCGCCGCGTCATGAACTAA   2205
                     ||||.|||||..|||||||.||.
BPUM_2401___r   2189 CTGTTCGCCGATTCATGAATTAG   2211


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