Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04003 and BPUM_2400
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:30
# Commandline: needle
# -asequence dna-align/BSNT_04003___yrvI.1.24716.seq
# -bsequence dna-align/BPUM_2400.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04003___yrvI-BPUM_2400.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04003___yrvI-BPUM_2400.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04003___yrvI
# 2: BPUM_2400
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 471
# Identity: 318/471 (67.5%)
# Similarity: 318/471 (67.5%)
# Gaps: 57/471 (12.1%)
# Score: 941.5
#
#
#=======================================
BSNT_04003___ 1 ATGAGATTAGTTGTTCAGCGAGTAACAGAAGCAAGCGTTACAGTGGACGA 50
||||||.|.|||||.|||||.||.|||...|||...||.|..||.||.||
BPUM_2400 1 ATGAGACTTGTTGTGCAGCGTGTGACAAGTGCATCTGTGAAGGTAGAAGA 50
BSNT_04003___ 51 AGAGGTC----GTCGGCCA--AATTGGACAAGGCCTCATGGTGCTGGTCG 94
||||.|| || |||| ||| .||||....|||||.||.||.|
BPUM_2400 51 AGAGATCACAGGT--GCCATCAAT----GAAGGATATATGGTACTCGTTG 94
BSNT_04003___ 95 GCATCACTCATGATGATACAGAAGATGA--TGCAGCTTATTTAGCCGATA 142
|..||||.||.||.|||||||||||.|| |||| |||||||||.||||
BPUM_2400 95 GTGTCACACACGAAGATACAGAAGAAGATGTGCA--TTATTTAGCTGATA 142
BSNT_04003___ 143 AAGTTGTCA-ATCTCCGTATTTTCGATGACAGTGAA---GGAAAAATGAA 188
|..||| || ||.|.||||||||.||.|| |||| ||.||||||||
BPUM_2400 143 AGCTTG-CACATTTACGTATTTTTGAGGA---TGAAAACGGGAAAATGAA 188
BSNT_04003___ 189 TCTGTC--TCTTGTAGATATAGGAGGAGAG-ATTTTATCCGTCTCACAGT 235
||..|| |.||| |||.||..|||| || .||||.||.||.||.||||
BPUM_2400 189 TCATTCGTTATTG--GATGTAAAAGGA-AGCGTTTTGTCTGTATCCCAGT 235
BSNT_04003___ 236 TTACGCTTTATGGAGATACGAAAAAAGGGC-GCCGGCCGAACTACATGAA 284
||||.||||||||.|||||| |.||||||| |..|||||||.|..|||||
BPUM_2400 236 TTACCCTTTATGGTGATACG-AGAAAGGGCAGAAGGCCGAATTTTATGAA 284
BSNT_04003___ 285 CGCGGCCAAACCTGAT------AAAGCTTTAGGTCTTTATGAAAAATGGA 328
.||.|||||.||.||| ||.|| .|||||.|||...|..|
BPUM_2400 285 AGCAGCCAAGCCAGATGCTGCGAACGC------CCTTTACGAATGTTTCA 328
BSNT_04003___ 329 ATGA--CCTGCTTCGTGAAAAAGGAATCAAAGTGGAGACCGGAACG-TTT 375
||.| || |||.|.||||||||.||..|.||.||.||.|| .|| |||
BPUM_2400 329 ATAAAGCC--CTTAGAGAAAAAGGCATACATGTAGAAACTGG-CCGCTTT 375
BSNT_04003___ 376 GGAGCAATGATGGATGT-TCAGCTT-ACAAACTCCGGACCGGTTACGCTC 423
||.|||||||||||||| ||| || ||.||.||.|||||.||.||..||
BPUM_2400 376 GGCGCAATGATGGATGTGTCA--TTGACCAATTCAGGACCCGTCACCATC 423
BSNT_04003___ 424 ATTATGGATTCAAAATAA--- 441
...||||||...|||.||
BPUM_2400 424 TGGATGGATAGCAAAGAATAG 444
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