Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03999 and BPUM_2396
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:30
# Commandline: needle
# -asequence dna-align/BSNT_03999___aspS.1.24716.seq
# -bsequence dna-align/BPUM_2396___aspS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03999___aspS-BPUM_2396___aspS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03999___aspS-BPUM_2396___aspS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03999___aspS
# 2: BPUM_2396___aspS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1854
# Identity: 1340/1854 (72.3%)
# Similarity: 1340/1854 (72.3%)
# Gaps: 144/1854 ( 7.8%)
# Score: 4733.0
#
#
#=======================================
BSNT_03999___ 1 ------TTGTTTGGAAGAACATATTATTGCGGTGATATAACTGAAAAAGC 44
.|||||||.|||||.|.||||||.||.||..||||.|||.|...
BPUM_2396___a 1 ATGTTTGTGTTTGGTAGAACTTTTTATTGTGGAGAAGTAACAGAAGACCA 50
BSNT_03999___ 45 AATTGGCGAATC---TGTAACGCTGAAAGGCTGGGTCCAAAAAAGACGAG 91
|||.||..||.| |||| .|.|||||.|||||.|||||||||||.|
BPUM_2396___a 51 AATCGGTCAAACCGTTGTA---TTAAAAGGATGGGTTCAAAAAAGACGTG 97
BSNT_03999___ 92 ACCTCGGCGGATTGATTTTTATTGACTTGCGTGACCGTACGGGAATTGTT 141
||||.||||||||.||.|||||.||..|||||||||||||.||||||||.
BPUM_2396___a 98 ACCTTGGCGGATTAATCTTTATCGATCTGCGTGACCGTACAGGAATTGTA 147
BSNT_03999___ 142 CAAGTCGTTTTCAACCCCGATGTGTCAAAAGAAGCGCTTGCTGTTGCGGA 191
||||..||||||||.||.||..|.||||||||.|||||||
BPUM_2396___a 148 CAAGCGGTTTTCAATCCAGACCTTTCAAAAGAGGCGCTTG---------- 187
BSNT_03999___ 192 AGGCATCAGA----------AATGAATACGTGCTTGATGTTCAAGGAAAA 231
||.||.|||| ||||||||.||.||||||.||.||||||..
BPUM_2396___a 188 AGACAGCAGAATCGATTCGTAATGAATATGTCCTTGATATTAAAGGAACG 237
BSNT_03999___ 232 GTAGTGGCGCGGGAAGAAGGAACAGTCAATCCGAATTTGAAGACAGGTGC 281
||.|||||..|.|||||||.||||.|||||||.|||.|.||.|||||...
BPUM_2396___a 238 GTTGTGGCAAGAGAAGAAGCAACAATCAATCCAAATCTAAAAACAGGGAA 287
BSNT_03999___ 282 GATCGAAATTCA---CGCTAACGGAGTGACAGTACTAAGTGCTGCAAAGA 328
.||.|||||.|| || .|||| ||.|..||..|||.||..||.||.|
BPUM_2396___a 288 AATTGAAATACAAGTCG-AAACG--GTCAGCGTGTTAAATGAAGCGAAAA 334
BSNT_03999___ 329 CGCCTCCATTTGCGATTTCTGATCAAGCAGAAGAAGTGTCAGAGGACGTT 378
|.|||||.||||.||||||.||||||||.||.||.||.|||||.||.||.
BPUM_2396___a 335 CTCCTCCTTTTGTGATTTCAGATCAAGCGGATGAGGTATCAGAAGATGTG 384
BSNT_03999___ 379 CGTTTAAAACACCGTTACTTAGATTTGCGCAGACCGGCTATGTTTCAAAC 428
||..|.|||.|||||||||||||..|.|||.|.||.|||||||||.||||
BPUM_2396___a 385 CGCCTTAAATACCGTTACTTAGACCTTCGCCGTCCTGCTATGTTTGAAAC 434
BSNT_03999___ 429 GATGCAGATGCGTCATAATGTGACGAAAGCTGTCCG-CAGCTTTT--TAG 475
||||.|.|||||.|||.|.||.||||.|||..|||| || ||| |||
BPUM_2396___a 435 GATGAAAATGCGACATGAAGTCACGAGAGCATTCCGACA---TTTCCTAG 481
BSNT_03999___ 476 ATGAAAACGGGTTTCTTGATATTGAAACGCCGATTTTAACAAAAAGCACG 525
||||.|||||.||.||.|||||||||||.|||||.|||||||||||.|||
BPUM_2396___a 482 ATGATAACGGCTTCCTAGATATTGAAACACCGATCTTAACAAAAAGTACG 531
BSNT_03999___ 526 CCTGAAGGCGCACGTGACTA-CTTGGTGCCGAGCCGTGTGCACGAAGGTG 574
||.||.||.||||||||||| ||| ||.||.||||||||.||.|||||.|
BPUM_2396___a 532 CCAGAGGGTGCACGTGACTATCTT-GTTCCAAGCCGTGTACATGAAGGAG 580
BSNT_03999___ 575 AGTTCTACGCGCTGCCGCAGTCTCCGCAGCTATTTAAACAGCTTCTGATG 624
|.|||||.||..||||.|||||.|||||..||||||||||..|.||.|||
BPUM_2396___a 581 AATTCTATGCCTTGCCTCAGTCCCCGCAATTATTTAAACAATTGCTAATG 630
BSNT_03999___ 625 GTATCAGGCATTGAACGGTATTATCAGATTGCCCGCTGTTTCCGTGATGA 674
||.|||||.||.||.||.||.|||||.|||||||||||.||..|.|||||
BPUM_2396___a 631 GTCTCAGGTATGGATCGTTACTATCAAATTGCCCGCTGCTTTAGAGATGA 680
BSNT_03999___ 675 AGACTTGCGTGCGGACCGCCAGCCTGAGTTCACGCAAATTGATATTGAAA 724
||||||.|||||.|||||.|||||.||.|||||.|||.|.|||||.||||
BPUM_2396___a 681 AGACTTACGTGCTGACCGTCAGCCGGAATTCACACAAGTCGATATCGAAA 730
BSNT_03999___ 725 TGTCCTTTATGAGCCAGGAAGACATTATGTCATTGGCTGAGGATATGATG 774
|||||||||||||.||.||.|||||||||.|..|.|||||.||.||||||
BPUM_2396___a 731 TGTCCTTTATGAGTCAAGAGGACATTATGACGCTTGCTGAAGAGATGATG 780
BSNT_03999___ 775 GCAAAGATTATGCGTGAAACA----AAAGGCGTGGA-----------AAT 809
||||||.|.| |||||.| ||||||||.|| .||
BPUM_2396___a 781 GCAAAGGTGA----TGAAAGACGTCAAAGGCGTAGATCTGACATTGCCAT 826
BSNT_03999___ 810 TAAGCTTCCTCTTCCCAGAATGACGTATGACGAAGCAATGAACAAGTACG 859
|| |||| |.|||||.|||||.|||||.|||||....||.|
BPUM_2396___a 827 TA-----CCTC------GTATGACATATGATGAAGCGATGAATTCTTATG 865
BSNT_03999___ 860 GTTCTGATAAACCGGATACGCGTTTTGACAT---GCTT-TTGACAGATGT 905
|.|||||||||||.|||||.||||||||.|| |||| |..||| |
BPUM_2396___a 866 GGTCTGATAAACCAGATACACGTTTTGAGATGAAGCTTGTCAACA----T 911
BSNT_03999___ 906 GTCTGACATTGTGAAGGATACGGAATTTAAAGTATTCTCATC--AGCTGT 953
.||.||||..||.||.||..|.||.||.|||| ||.|.|.| ||||||
BPUM_2396___a 912 TTCAGACACGGTAAAAGACTCTGACTTCAAAG--TTTTTAGCGGAGCTGT 959
BSNT_03999___ 954 AGCAAACGGCGGTGTGGTCAAAGCCATCAACGTAAAAGGCGGTGCCGGCG 1003
...|||.||.||.|..||.|||||||||||.||.|||||.|..| |.|||
BPUM_2396___a 960 GAAAAATGGTGGAGCTGTGAAAGCCATCAATGTCAAAGGAGCAG-CAGCG 1008
BSNT_03999___ 1004 -ATTACTCCAGAAAAGACATCGATGCTCTTGGCGCTTTTGCTGCAAACTA 1052
|.|||||.|||||||||||.|||||.|||||.||.|||||.||.|||||
BPUM_2396___a 1009 AACTACTCAAGAAAAGACATTGATGCCCTTGGTGCATTTGCAGCGAACTA 1058
BSNT_03999___ 1053 TGGGGCGAAAGGACTTGCCTGGGTGAAAGTTGAAG---CAGACGGAGTGA 1099
.||.||.|||||.||.||.|||.|.||||..|||| |||| |.|.|
BPUM_2396___a 1059 CGGTGCAAAAGGTCTAGCTTGGCTTAAAGCAGAAGGGTCAGA---ATTAA 1105
BSNT_03999___ 1100 AAGGACCGATCGCTAAATTCTTTGATGAAGAAAAGCAGTCTAAGCTG-AT 1148
|||||||.||.||||||||||||||.||||.||||| |||..| ||
BPUM_2396___a 1106 AAGGACCAATTGCTAAATTCTTTGACGAAGCAAAGC-----AAGGAGAAT 1150
BSNT_03999___ 1149 TGAAGCACTTGATGCTGC-------TGAAGGTGATTTGTTGCTGTTCGGA 1191
|.||..| ||.||||| .|||||.||..|.||.||.||.|..
BPUM_2396___a 1151 TAAAAGA---GAAGCTGCAAGTCGAAGAAGGCGACCTTTTACTTTTTGTT 1197
BSNT_03999___ 1192 GCGGATCAATTTGAAGT-TGTGGCCGCAT----CACTCGGCGCGCTGCGT 1236
||.|||.| ||.|| |||.|.| ||| ||||.|||||.||.|||
BPUM_2396___a 1198 GCAGATAA----GACGTCTGTTGTC-CATGATGCACTTGGCGCCCTTCGT 1242
BSNT_03999___ 1237 TTAAAGCTTGGGAAAGAGCGCGGGCTGATTGA-------CGAAAACCTGT 1279
.||||.||.||.|||||||..|..||.||.|| ||| |
BPUM_2396___a 1243 CTAAAACTCGGCAAAGAGCTTGAACTCATCGATGAGTCTCGA-------T 1285
BSNT_03999___ 1280 TCAATTTCTTATGGGTCATTGACTGGCCGCTATTAGAGCATGATCCTGAG 1329
||||.|||||||||||..||||.||||||||..|.||..|.|||...||.
BPUM_2396___a 1286 TCAACTTCTTATGGGTTGTTGATTGGCCGCTGCTTGAAAAAGATGAAGAA 1335
BSNT_03999___ 1330 GAAGGCCGTTTCTACGCAGCGCACCATCCGTTCACAATGCCTGTCCGGGA 1379
||||||||||||||.||.||.||.|||||.|||||||||||.||.||.||
BPUM_2396___a 1336 GAAGGCCGTTTCTATGCTGCCCATCATCCATTCACAATGCCAGTACGCGA 1385
BSNT_03999___ 1380 AGACCTTGAGCTGATTGAAAC-AGCGCCTGAAGACATGAAAGCACAAGCT 1428
.||.|||||..|.|||||.|| ||| ||.|||||||||||.|||||.|||
BPUM_2396___a 1386 CGATCTTGAATTAATTGAGACAAGC-CCAGAAGACATGAAGGCACAGGCT 1434
BSNT_03999___ 1429 TATGACCTCGTCTTAAACGGCTATGAGCTTGGCGGCGGTTCAATCCGTAT 1478
||.||.||.|||.|.||.|||||||||||||||||.|||||.||.|||||
BPUM_2396___a 1435 TACGATCTTGTCCTGAATGGCTATGAGCTTGGCGGAGGTTCGATTCGTAT 1484
BSNT_03999___ 1479 TTTCGAAAAGGATATTCAGGAAAAAATGTTTGCGCTT-CTCGGCTTCTCA 1527
||||||||||||.|||||.|||||||||||| .|||| ||.||.||.|||
BPUM_2396___a 1485 TTTCGAAAAGGACATTCAAGAAAAAATGTTT-AGCTTACTTGGGTTTTCA 1533
BSNT_03999___ 1528 CCAGAAGAAGCGGCTGAACAGTTCGGATTCCTGCTGGAAGCATTTGAATA 1577
..||||||.||...||||||.||.||.|||||.||.||.||.|||||..|
BPUM_2396___a 1534 AAAGAAGAGGCTTATGAACAATTTGGCTTCCTTCTAGATGCTTTTGAGCA 1583
BSNT_03999___ 1578 CGGCGCTCCTCCGCACGGCGGAATCGCACTTGG-CTTAGACCGTCTCGTT 1626
|||.|.|||.||||||||||||||||||||||| ||| |||||..|.||.
BPUM_2396___a 1584 CGGTGTTCCCCCGCACGGCGGAATCGCACTTGGTCTT-GACCGATTAGTG 1632
BSNT_03999___ 1627 ATGCTTCTCGCAGGACGTACGAACCTGAGAGATACGATTGCATTCCCGAA 1676
|||||.||.||.||.||..|.|||||.|||||.||||||||.||||||||
BPUM_2396___a 1633 ATGCTGCTTGCTGGGCGCTCTAACCTAAGAGACACGATTGCTTTCCCGAA 1682
BSNT_03999___ 1677 AACGGCAAGTGCAAGCTGCCTGATGACAGAGGCGCCTGGAGAAGTAAGCG 1726
||||||||||||.||||||.||.|.|||||.||.|||||..|.||.||||
BPUM_2396___a 1683 AACGGCAAGTGCGAGCTGCGTGCTAACAGATGCTCCTGGCCATGTGAGCG 1732
BSNT_03999___ 1727 ACGCTCAGCTTGACGAGCTTCATCTT-TCTATCAAGAAAAAAGTTAAGAA 1775
|.||.||||||||.||| ||.|.||| .|.||.||.|.||||||.||..|
BPUM_2396___a 1733 AGGCGCAGCTTGATGAG-TTAAGCTTAGCCATTAAAACAAAAGTAAAACA 1781
BSNT_03999___ 1776 CTGA 1779
.|.|
BPUM_2396___a 1782 GTAA 1785
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