Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03996 and BPUM_2394
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:29
# Commandline: needle
# -asequence dna-align/BSNT_03996___rarA.1.24716.seq
# -bsequence dna-align/BPUM_2394___yrvN.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03996___rarA-BPUM_2394___yrvN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03996___rarA-BPUM_2394___yrvN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03996___rarA
# 2: BPUM_2394___yrvN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1301
# Identity: 942/1301 (72.4%)
# Similarity: 942/1301 (72.4%)
# Gaps: 70/1301 ( 5.4%)
# Score: 3310.0
#
#
#=======================================
BSNT_03996___ 1 ATGAAGCCATTGGCATATCGGATGCGTCCGACAAAAATAGAGGATATTAT 50
|||||.||.||.||.||.||||||||.||.|...|.||.||.||.||.||
BPUM_2394___y 1 ATGAAACCTTTAGCGTACCGGATGCGCCCAAGTCATATTGAAGACATCAT 50
BSNT_03996___ 51 CGGCCAGCAGCATCTGGTGGCTGAAGATAAAATTATTGGCAGAATGGTCC 100
.||.|||.|||||||.||.|..||||.|.||||||||.|..||||||||.
BPUM_2394___y 51 TGGGCAGGAGCATCTCGTTGGAGAAGGTCAAATTATTAGACGAATGGTCG 100
BSNT_03996___ 101 AGGCAAAACATTTGTCATCCATGATTTTGTACGGGCCGCCCGGAATTGGA 150
|||||||||||||.||.||.||||||||.||.||.|||||.||.||.||.
BPUM_2394___y 101 AGGCAAAACATTTATCCTCGATGATTTTATATGGACCGCCGGGCATCGGC 150
BSNT_03996___ 151 AAAACATCAATCGCAACAGCAATCGCCGGTTCA--ACAAGTATTGCTTTT 198
|||||||||||.||.||.||.|||||.|| || |||||.|||||.|||
BPUM_2394___y 151 AAAACATCAATTGCGACGGCGATCGCTGG--CAGTACAAGCATTGCGTTT 198
BSNT_03996___ 199 CGAAAGCTGAATGCTGTCATTAACAATAAAAAAGATATGGAA---ATCGT 245
||.|.|.|||||||.||||||.|.||.|||||.||||||||| .|||.
BPUM_2394___y 199 CGGACGTTGAATGCGGTCATTCATAACAAAAAGGATATGGAAGCTGTCGC 248
BSNT_03996___ 246 AGCTCAGGAAGCCAAGATGTCCGGCCAAGTGATTTTGATTCTGGATGAAG 295
.||| |||||.||.|||..||||||.||.||..|.|||.|.||.||.|
BPUM_2394___y 249 CGCT---GAAGCGAAAATGAGCGGCCAGGTCATCCTCATTTTAGACGAGG 295
BSNT_03996___ 296 TCCACAGGCTGGATAAAGGAAAACAGGATTTTCTATTACCCTATTTAGAA 345
|.||||||||.|||||||||||.||.||||||||..|.||.|||||||||
BPUM_2394___y 296 TTCACAGGCTTGATAAAGGAAAGCAAGATTTTCTTCTTCCTTATTTAGAA 345
BSNT_03996___ 346 AACGGGATGATCATTTTGATCGGAGCAACGACGGCTAACCCGTATCATGC 395
||.||.|||||||||||.||.||.|||||||||||||||||.||||||||
BPUM_2394___y 346 AATGGCATGATCATTTTAATTGGTGCAACGACGGCTAACCCTTATCATGC 395
BSNT_03996___ 396 CATTAATCCGGCGATCAGAAGCCGGACCCAGATTTTTGAGCTTGAACCGT 445
.||||||||.||.|||.|.||||||||.||.||.||||||||..|||||.
BPUM_2394___y 396 AATTAATCCTGCCATCCGGAGCCGGACACAAATATTTGAGCTAAAACCGC 445
BSNT_03996___ 446 TAACACCTGATCTGATTAAACAG-GCA--------CTG---GAAC--GCG 481
| |.|||||| ||| ||| .||| |.|
BPUM_2394___y 446 T--------------TGAAACAGAGCAAATCAAGGCTGCGTTAACAAGAG 481
BSNT_03996___ 482 CGCTCCATGATGAGCATCGGGGCCTTGGCACCTATTCTGTATCCATTGAT 531
|..|.||.|||||.|||||.|||||||||...|||...||..|..|.||.
BPUM_2394___y 482 CATTACAGGATGAACATCGCGGCCTTGGCGGTTATGAAGTGACAGTGGAC 531
BSNT_03996___ 532 GATCAGGCGATGGAGCATTTTGCCCACGGATGCGGAGGAGATGTCCGCTC 581
|||.|.||||||.|.|||||||||.||||||||||.|||||.||.|||||
BPUM_2394___y 532 GATGAAGCGATGCATCATTTTGCCAACGGATGCGGCGGAGACGTACGCTC 581
BSNT_03996___ 582 CGCTTTAAATGCGCTTGAGCTTGCCGTGTTGTCAACGAAGGAGTCAGCAG 631
.|||||||||||..|.||.||.||.||.||.||.||.|| |||||
BPUM_2394___y 582 TGCTTTAAATGCATTAGAACTAGCTGTCTTATCGACAAA------AGCAG 625
BSNT_03996___ 632 ACGGTGAA---------ATTCACATTACATTAGAAACCGCGGAAGAATGC 672
| |||| |||...||.||..|.|...|.||.||||||||.
BPUM_2394___y 626 A---TGAAGCTGGGCATATTGTGATCACTCTTGCCGCAGCAGAAGAATGT 672
BSNT_03996___ 673 TTGCAGAAAAAAAGCTTTTCTCACGATAAAGATGGTGACGCGCATTATGA 722
||.||.|||||.|||||.||.||.|||||..|||||||.||.||||||||
BPUM_2394___y 673 TTACAAAAAAAGAGCTTCTCACATGATAAGAATGGTGATGCTCATTATGA 722
BSNT_03996___ 723 TGTACTGTCCGCTTTTCAAAAATCGATCCGCGGCTCTGATGCCAACGCTG 772
|||.||.||.||||||||||||||.||..|.||.||||||||..|.||.|
BPUM_2394___y 723 TGTCCTCTCGGCTTTTCAAAAATCCATTAGAGGATCTGATGCAGATGCGG 772
BSNT_03996___ 773 CTCTTCACTATTTGGCTAGATTAATTGAAGCCGGTGATCTGGAGAGCATC 822
|.||.||.||..|.||.|||||.||||||||.||.||.||.||.|||||.
BPUM_2394___y 773 CACTACATTACCTTGCCAGATTGATTGAAGCAGGAGACCTTGAAAGCATT 822
BSNT_03996___ 823 GCAAGACGATTGCTTGTTATCGCCTATGAAGATATCGGTTTAGCAAGCCC 872
.|||||.|..|.||.||.||.||.||.||||||||.||.|||||.||.||
BPUM_2394___y 823 TCAAGAAGGCTACTCGTGATGGCTTACGAAGATATTGGCTTAGCTAGTCC 872
BSNT_03996___ 873 GCAAGCCGGCCCTAGAGTGCTGAACGCTATTCAGACCGCTGAGCGAGTCG 922
.|||||.||.|||.|.|||.|.|.||||.|||||||.||.||..||||||
BPUM_2394___y 873 TCAAGCTGGACCTCGTGTGTTAAGCGCTGTTCAGACAGCAGAAAGAGTCG 922
BSNT_03996___ 923 GGTTTCCTGAAGCGCGAATCCCGCTGGCCAACGCAGTTATTGAGCTTTGC 972
|.||.||.|||||.|||||.||||||||.||.|||||.|||||.||.||.
BPUM_2394___y 923 GTTTCCCGGAAGCACGAATTCCGCTGGCTAATGCAGTCATTGAACTGTGT 972
BSNT_03996___ 973 CTCTCACCGAAATCAAACTCTGCCAT-TCTGGCAATCGATGAGGCCCTGG 1021
||.||.||.||.||.|||||.| ||| |..|||||||||||.|||.||.|
BPUM_2394___y 973 CTTTCTCCTAAGTCCAACTCAG-CATATAAGGCAATCGATGCGGCACTTG 1021
BSNT_03996___ 1022 CAGATATCAGAGCCGGAAAAATTGGTGATGTCCCGAAGCATTTAAAAGAC 1071
..||.||..|..|.||.|||||.|||||..||||....|||||||||||.
BPUM_2394___y 1022 GTGACATTCGTTCAGGGAAAATAGGTGAAATCCCTGTTCATTTAAAAGAT 1071
BSNT_03996___ 1072 GCGCATTATAAAGGAGCT-CAGGAATTAGGAAGAGGAATCGACTATAAAT 1120
||.||.||.||||||||| || |.|.|.||.|||||..|||||||...||
BPUM_2394___y 1072 GCTCACTACAAAGGAGCTACA-GCACTCGGTAGAGGTGTCGACTACTTAT 1120
BSNT_03996___ 1121 ACCCGCACAATTACGACAGCGGTTGGGTCGAA-CAACAATACCTCCCTGA 1169
|.||.|||.||||.||.|.|||.||||| ||| ||.||.|||||.|||||
BPUM_2394___y 1121 ATCCACACGATTATGAAAACGGCTGGGT-GAAGCAGCAGTACCTACCTGA 1169
BSNT_03996___ 1170 TTCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACAGGAAAATTCG 1219
|.|.||||||||.||.|||||||||.|.|||||.||.|||||.|||||.|
BPUM_2394___y 1170 TCCGCTGAAAAACAAACAATACTATGAACCGAAGCAAACAGGCAAATTTG 1219
BSNT_03996___ 1220 AATCCGC-CTTAAAGCAGGTGTATGATAAATTAATGAAAAG---AAAATA 1265
||..||| ||.||| ||.||.|||||.||.||| |||.| ||||||
BPUM_2394___y 1220 AAGGCGCACTGAAA-CAAGTATATGAGAATTTA---AAACGCCAAAAATA 1265
BSNT_03996___ 1266 A 1266
|
BPUM_2394___y 1266 A 1266
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