Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03996 and BPUM_2394

See Amino acid alignment / Visit BSNT_03996 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:29
# Commandline: needle
#    -asequence dna-align/BSNT_03996___rarA.1.24716.seq
#    -bsequence dna-align/BPUM_2394___yrvN.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03996___rarA-BPUM_2394___yrvN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03996___rarA-BPUM_2394___yrvN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03996___rarA
# 2: BPUM_2394___yrvN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1301
# Identity:     942/1301 (72.4%)
# Similarity:   942/1301 (72.4%)
# Gaps:          70/1301 ( 5.4%)
# Score: 3310.0
# 
#
#=======================================

BSNT_03996___      1 ATGAAGCCATTGGCATATCGGATGCGTCCGACAAAAATAGAGGATATTAT     50
                     |||||.||.||.||.||.||||||||.||.|...|.||.||.||.||.||
BPUM_2394___y      1 ATGAAACCTTTAGCGTACCGGATGCGCCCAAGTCATATTGAAGACATCAT     50

BSNT_03996___     51 CGGCCAGCAGCATCTGGTGGCTGAAGATAAAATTATTGGCAGAATGGTCC    100
                     .||.|||.|||||||.||.|..||||.|.||||||||.|..||||||||.
BPUM_2394___y     51 TGGGCAGGAGCATCTCGTTGGAGAAGGTCAAATTATTAGACGAATGGTCG    100

BSNT_03996___    101 AGGCAAAACATTTGTCATCCATGATTTTGTACGGGCCGCCCGGAATTGGA    150
                     |||||||||||||.||.||.||||||||.||.||.|||||.||.||.||.
BPUM_2394___y    101 AGGCAAAACATTTATCCTCGATGATTTTATATGGACCGCCGGGCATCGGC    150

BSNT_03996___    151 AAAACATCAATCGCAACAGCAATCGCCGGTTCA--ACAAGTATTGCTTTT    198
                     |||||||||||.||.||.||.|||||.||  ||  |||||.|||||.|||
BPUM_2394___y    151 AAAACATCAATTGCGACGGCGATCGCTGG--CAGTACAAGCATTGCGTTT    198

BSNT_03996___    199 CGAAAGCTGAATGCTGTCATTAACAATAAAAAAGATATGGAA---ATCGT    245
                     ||.|.|.|||||||.||||||.|.||.|||||.|||||||||   .|||.
BPUM_2394___y    199 CGGACGTTGAATGCGGTCATTCATAACAAAAAGGATATGGAAGCTGTCGC    248

BSNT_03996___    246 AGCTCAGGAAGCCAAGATGTCCGGCCAAGTGATTTTGATTCTGGATGAAG    295
                     .|||   |||||.||.|||..||||||.||.||..|.|||.|.||.||.|
BPUM_2394___y    249 CGCT---GAAGCGAAAATGAGCGGCCAGGTCATCCTCATTTTAGACGAGG    295

BSNT_03996___    296 TCCACAGGCTGGATAAAGGAAAACAGGATTTTCTATTACCCTATTTAGAA    345
                     |.||||||||.|||||||||||.||.||||||||..|.||.|||||||||
BPUM_2394___y    296 TTCACAGGCTTGATAAAGGAAAGCAAGATTTTCTTCTTCCTTATTTAGAA    345

BSNT_03996___    346 AACGGGATGATCATTTTGATCGGAGCAACGACGGCTAACCCGTATCATGC    395
                     ||.||.|||||||||||.||.||.|||||||||||||||||.||||||||
BPUM_2394___y    346 AATGGCATGATCATTTTAATTGGTGCAACGACGGCTAACCCTTATCATGC    395

BSNT_03996___    396 CATTAATCCGGCGATCAGAAGCCGGACCCAGATTTTTGAGCTTGAACCGT    445
                     .||||||||.||.|||.|.||||||||.||.||.||||||||..|||||.
BPUM_2394___y    396 AATTAATCCTGCCATCCGGAGCCGGACACAAATATTTGAGCTAAAACCGC    445

BSNT_03996___    446 TAACACCTGATCTGATTAAACAG-GCA--------CTG---GAAC--GCG    481
                     |              |.|||||| |||        |||   .|||  |.|
BPUM_2394___y    446 T--------------TGAAACAGAGCAAATCAAGGCTGCGTTAACAAGAG    481

BSNT_03996___    482 CGCTCCATGATGAGCATCGGGGCCTTGGCACCTATTCTGTATCCATTGAT    531
                     |..|.||.|||||.|||||.|||||||||...|||...||..|..|.||.
BPUM_2394___y    482 CATTACAGGATGAACATCGCGGCCTTGGCGGTTATGAAGTGACAGTGGAC    531

BSNT_03996___    532 GATCAGGCGATGGAGCATTTTGCCCACGGATGCGGAGGAGATGTCCGCTC    581
                     |||.|.||||||.|.|||||||||.||||||||||.|||||.||.|||||
BPUM_2394___y    532 GATGAAGCGATGCATCATTTTGCCAACGGATGCGGCGGAGACGTACGCTC    581

BSNT_03996___    582 CGCTTTAAATGCGCTTGAGCTTGCCGTGTTGTCAACGAAGGAGTCAGCAG    631
                     .|||||||||||..|.||.||.||.||.||.||.||.||      |||||
BPUM_2394___y    582 TGCTTTAAATGCATTAGAACTAGCTGTCTTATCGACAAA------AGCAG    625

BSNT_03996___    632 ACGGTGAA---------ATTCACATTACATTAGAAACCGCGGAAGAATGC    672
                     |   ||||         |||...||.||..|.|...|.||.||||||||.
BPUM_2394___y    626 A---TGAAGCTGGGCATATTGTGATCACTCTTGCCGCAGCAGAAGAATGT    672

BSNT_03996___    673 TTGCAGAAAAAAAGCTTTTCTCACGATAAAGATGGTGACGCGCATTATGA    722
                     ||.||.|||||.|||||.||.||.|||||..|||||||.||.||||||||
BPUM_2394___y    673 TTACAAAAAAAGAGCTTCTCACATGATAAGAATGGTGATGCTCATTATGA    722

BSNT_03996___    723 TGTACTGTCCGCTTTTCAAAAATCGATCCGCGGCTCTGATGCCAACGCTG    772
                     |||.||.||.||||||||||||||.||..|.||.||||||||..|.||.|
BPUM_2394___y    723 TGTCCTCTCGGCTTTTCAAAAATCCATTAGAGGATCTGATGCAGATGCGG    772

BSNT_03996___    773 CTCTTCACTATTTGGCTAGATTAATTGAAGCCGGTGATCTGGAGAGCATC    822
                     |.||.||.||..|.||.|||||.||||||||.||.||.||.||.|||||.
BPUM_2394___y    773 CACTACATTACCTTGCCAGATTGATTGAAGCAGGAGACCTTGAAAGCATT    822

BSNT_03996___    823 GCAAGACGATTGCTTGTTATCGCCTATGAAGATATCGGTTTAGCAAGCCC    872
                     .|||||.|..|.||.||.||.||.||.||||||||.||.|||||.||.||
BPUM_2394___y    823 TCAAGAAGGCTACTCGTGATGGCTTACGAAGATATTGGCTTAGCTAGTCC    872

BSNT_03996___    873 GCAAGCCGGCCCTAGAGTGCTGAACGCTATTCAGACCGCTGAGCGAGTCG    922
                     .|||||.||.|||.|.|||.|.|.||||.|||||||.||.||..||||||
BPUM_2394___y    873 TCAAGCTGGACCTCGTGTGTTAAGCGCTGTTCAGACAGCAGAAAGAGTCG    922

BSNT_03996___    923 GGTTTCCTGAAGCGCGAATCCCGCTGGCCAACGCAGTTATTGAGCTTTGC    972
                     |.||.||.|||||.|||||.||||||||.||.|||||.|||||.||.||.
BPUM_2394___y    923 GTTTCCCGGAAGCACGAATTCCGCTGGCTAATGCAGTCATTGAACTGTGT    972

BSNT_03996___    973 CTCTCACCGAAATCAAACTCTGCCAT-TCTGGCAATCGATGAGGCCCTGG   1021
                     ||.||.||.||.||.|||||.| ||| |..|||||||||||.|||.||.|
BPUM_2394___y    973 CTTTCTCCTAAGTCCAACTCAG-CATATAAGGCAATCGATGCGGCACTTG   1021

BSNT_03996___   1022 CAGATATCAGAGCCGGAAAAATTGGTGATGTCCCGAAGCATTTAAAAGAC   1071
                     ..||.||..|..|.||.|||||.|||||..||||....|||||||||||.
BPUM_2394___y   1022 GTGACATTCGTTCAGGGAAAATAGGTGAAATCCCTGTTCATTTAAAAGAT   1071

BSNT_03996___   1072 GCGCATTATAAAGGAGCT-CAGGAATTAGGAAGAGGAATCGACTATAAAT   1120
                     ||.||.||.||||||||| || |.|.|.||.|||||..|||||||...||
BPUM_2394___y   1072 GCTCACTACAAAGGAGCTACA-GCACTCGGTAGAGGTGTCGACTACTTAT   1120

BSNT_03996___   1121 ACCCGCACAATTACGACAGCGGTTGGGTCGAA-CAACAATACCTCCCTGA   1169
                     |.||.|||.||||.||.|.|||.||||| ||| ||.||.|||||.|||||
BPUM_2394___y   1121 ATCCACACGATTATGAAAACGGCTGGGT-GAAGCAGCAGTACCTACCTGA   1169

BSNT_03996___   1170 TTCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACAGGAAAATTCG   1219
                     |.|.||||||||.||.|||||||||.|.|||||.||.|||||.|||||.|
BPUM_2394___y   1170 TCCGCTGAAAAACAAACAATACTATGAACCGAAGCAAACAGGCAAATTTG   1219

BSNT_03996___   1220 AATCCGC-CTTAAAGCAGGTGTATGATAAATTAATGAAAAG---AAAATA   1265
                     ||..||| ||.||| ||.||.|||||.||.|||   |||.|   ||||||
BPUM_2394___y   1220 AAGGCGCACTGAAA-CAAGTATATGAGAATTTA---AAACGCCAAAAATA   1265

BSNT_03996___   1266 A   1266
                     |
BPUM_2394___y   1266 A   1266


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