Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03992 and BPUM_2391
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:29
# Commandline: needle
# -asequence dna-align/BSNT_03992___trmU.1.24716.seq
# -bsequence dna-align/BPUM_2391___mnmA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03992___trmU-BPUM_2391___mnmA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03992___trmU-BPUM_2391___mnmA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03992___trmU
# 2: BPUM_2391___mnmA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1141
# Identity: 865/1141 (75.8%)
# Similarity: 865/1141 (75.8%)
# Gaps: 47/1141 ( 4.1%)
# Score: 3233.5
#
#
#=======================================
BSNT_03992___ 1 ATGGAAAAACGGCCGGAGGATACAAGAGTCGTCGTCGGCATGTCCGGCGG 50
|||..||||.|.||.||.||.||||||||.||.|||||.||||||||.||
BPUM_2391___m 1 ATGACAAAAAGACCAGAAGACACAAGAGTTGTGGTCGGTATGTCCGGTGG 50
BSNT_03992___ 51 AGTAGACTCATCTGTGGCGGCCCTGCTGTTAAAAGAACAGGGCTATGATG 100
|||.||||||||.||.||.||.||..||.|||||||.||.||||||||||
BPUM_2391___m 51 AGTCGACTCATCAGTTGCCGCTCTTATGCTAAAAGAGCAAGGCTATGATG 100
BSNT_03992___ 101 TAATCGGAATCTTTATGAAAAACTGGGATGATACGGACGAAAACGGTTTT 150
|.|||||.||.||||||||||||||||||||.||.||.|||||.|||.|.
BPUM_2391___m 101 TGATCGGCATATTTATGAAAAACTGGGATGACACAGATGAAAATGGTGTG 150
BSNT_03992___ 151 TGCACGGCGACAGAGGATTATGAAGATGTGATCCGCGTCTGCAACCAAAT 200
||.||.||.||.|||||||||||.|||||.|||||||||||.||||||||
BPUM_2391___m 151 TGTACAGCAACGGAGGATTATGAGGATGTCATCCGCGTCTGTAACCAAAT 200
BSNT_03992___ 201 CGGAATTCCGTATTATGCCGTAAACTTTGAAAAGCAATATTATGAGAAGG 250
.|||||.||.||||||||.||.||.||.|||||||||||||..||.||.|
BPUM_2391___m 201 TGGAATCCCTTATTATGCAGTGAATTTCGAAAAGCAATATTGGGACAAAG 250
BSNT_03992___ 251 TATTTCAATACTTCCTTGATGAATATAAAGCAGGCAGAACACCAAACCCG 300
|.||||||||.|||||||||||||||||||||||||||||.||||||||.
BPUM_2391___m 251 TGTTTCAATATTTCCTTGATGAATATAAAGCAGGCAGAACGCCAAACCCA 300
BSNT_03992___ 301 GATGTATTGTGCAACAAAGAAATTAAATTCAAGGCCTTTTTGGAGCATGC 350
|||||..||||.||||||||||||||.||.||.||.|||.|.||||||||
BPUM_2391___m 301 GATGTCATGTGTAACAAAGAAATTAAGTTTAAAGCGTTTCTTGAGCATGC 350
BSNT_03992___ 351 ATTGTCACTTGGCGCCGACTATTTAGCGACTGGCCACTATGCAAGAGTAG 400
||||||.||.||.||.||.||||||||.||.||.||||||||..|.||.|
BPUM_2391___m 351 ATTGTCGCTCGGTGCGGATTATTTAGCAACAGGTCACTATGCGCGCGTCG 400
BSNT_03992___ 401 ACAGAAGCGGCGAAAAAGTCAGAATGCTGCGCGGCATTGATGAAAACAAG 450
||||||..|||||..||||.|.||||||..|.||..||||||..|||||.
BPUM_2391___m 401 ACAGAACTGGCGATGAAGTTAAAATGCTTAGAGGTCTTGATGCGAACAAA 450
BSNT_03992___ 451 GATCAAACGTACTTCTTGAATCAGCTGACAGAAGATACGCTGAGC----- 495
||.||||||||.|||||.|||||||||||..|.|| || |||
BPUM_2391___m 451 GACCAAACGTATTTCTTAAATCAGCTGACTCAGGA-AC----AGCTTGAT 495
BSNT_03992___ 496 AAAGTCATGTTCCCGATCGGCGAACTTCA------AAAAAGCCGTGTGCG 539
||||||||||||||.|||||.|| ||.| |||| |.||.||
BPUM_2391___m 496 AAAGTCATGTTCCCAATCGGTGA--TTTAGAGAAGAAAA----GGGTTCG 539
BSNT_03992___ 540 TGAAATCGCCAAAGAAGCAGAACTTGCAACGGCGACGAAAAAAGA--CAG 587
||||.|.||.|||||||||||.||.|||||.||.||||||||||| ||
BPUM_2391___m 540 TGAATTGGCAAAAGAAGCAGAGCTCGCAACCGCAACGAAAAAAGATTCA- 588
BSNT_03992___ 588 TACAGGCATCTGCTTTATCGGCGAACGCAACTTCAAAACGTTTCTCAGCC 637
||.||.||.||||||||.||.|||.|.|||||.||||||||.|||||.|
BPUM_2391___m 589 -ACGGGTATTTGCTTTATTGGGGAAAGAAACTTTAAAACGTTCCTCAGTC 637
BSNT_03992___ 638 AATATCTCCCTGCACAGCCGGGCGATATGATGACGATGGACGGCGAAGTA 687
|||||.|.|||||||||||.||||..|||..||||||||||||.|||||.
BPUM_2391___m 638 AATATTTACCTGCACAGCCTGGCGTGATGCAGACGATGGACGGAGAAGTC 687
BSNT_03992___ 688 AAAGGCCGCCACGACGGGTTGATGTACTATACGATCGGACAGCGTCACGG 737
|||||....|||||.||..|||||||.||.||||||||.|||||.||.||
BPUM_2391___m 688 AAAGGGGAGCACGATGGACTGATGTATTACACGATCGGTCAGCGCCAAGG 737
BSNT_03992___ 738 CCTTGGCATCGGCGGAAGCGGCGAGCCGTGGTTTGCGGTAGGGAAAGATC 787
.||||||||.|||||.|||||.||.||.|||||||..||.||.||||| |
BPUM_2391___m 738 TCTTGGCATTGGCGGCAGCGGTGATCCTTGGTTTGTCGTTGGAAAAGA-C 786
BSNT_03992___ 788 TT-GAAAAGAACATCCTCTACGTAGATCAAGGGTTCCATAACCCTCTTTT 836
|| |||.|.||.||..|.|..||.||.|||||.||.||.||.||.|||||
BPUM_2391___m 787 TTGGAACAAAATATTTTGTTTGTCGAACAAGGTTTTCACAATCCACTTTT 836
BSNT_03992___ 837 ATATTCCGACAAAATCACAGCAACAAATATCAGCTGGGTACGTTCGGATA 886
||||||.||.|..||..||||....||||||||||||...|||.|..|||
BPUM_2391___m 837 ATATTCTGAAAGCATTTCAGCCGTCAATATCAGCTGGACTCGTCCTCATA 886
BSNT_03992___ 887 TCATG--------AAGGGCGAAGAGATTT--CCTGCACGGCTAAATTCCG 926
| || ||.||.||| || |.|||||.|||||||||.|
BPUM_2391___m 887 T--TGTCGGTGAAAACGGTGAA-----TTAACATGCACAGCTAAATTCAG 929
BSNT_03992___ 927 TTACCGCCAAGAGGATCATAAAGTAACAGTGCGCATGACTGGCGAAGGTG 976
.|||||.|||||.|||||..|.||.|..||....|||||.||.||....|
BPUM_2391___m 930 ATACCGTCAAGAAGATCACCATGTGAAGGTCAAAATGACAGGTGAGCAAG 979
BSNT_03992___ 977 AAGCGGAAGTCATCTTTGATGAACAAGTCCGCGCTGTAACGCCGGGACAA 1026
|||||...||||||||||||||||..||.||.|||||.||.||.|||||.
BPUM_2391___m 980 AAGCGATGGTCATCTTTGATGAACCTGTTCGTGCTGTGACACCAGGACAG 1029
BSNT_03992___ 1027 GCCGTTGTCTTCTATGACGGCGAAGAATGCCTTGGCGGCGGGACAATTGA 1076
||.||||||||.|||||.|||||.|||||.||.||.|||||.||.|||||
BPUM_2391___m 1030 GCGGTTGTCTTTTATGATGGCGACGAATGTCTAGGTGGCGGAACTATTGA 1079
BSNT_03992___ 1077 TGATGTGTACAAAGACGGAACAAAA-TTGTGGTACGTATAA 1116
.|||||.|..|||||||| .||||| .|||.||||||.|||
BPUM_2391___m 1080 CGATGTCTTTAAAGACGG-CCAAAAGCTGTCGTACGTGTAA 1119
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