Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03991 and BPUM_2390
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:29
# Commandline: needle
# -asequence dna-align/BSNT_03991___yrrB.1.24716.seq
# -bsequence dna-align/BPUM_2390___yrrB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03991___yrrB-BPUM_2390___yrrB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03991___yrrB-BPUM_2390___yrrB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03991___yrrB
# 2: BPUM_2390___yrrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 693
# Identity: 467/693 (67.4%)
# Similarity: 467/693 (67.4%)
# Gaps: 81/693 (11.7%)
# Score: 1448.5
#
#
#=======================================
BSNT_03991___ 1 GTGGATTATAATCAACTCGGTATAGAGGC----GATGCA--GGAAGGCGA 44
.||.||.||||..||.|.||.|||||.|| .|| || |||| .|
BPUM_2390___y 1 ATGAATCATAACGAAATTGGCATAGAAGCCTTAAAT-CAGGGGAA---CA 46
BSNT_03991___ 45 TTACGAGAAAGCGGCAGAGGCATTTACAAAAGCGATTGAAGAAAATAAAG 94
| |||.||||||||.||.||.|||||.|||||.||||||| ||||
BPUM_2390___y 47 T--CGAAAAAGCGGCGGAAGCTTTTACGAAAGCCATTGAAG-----AAAG 89
BSNT_03991___ 95 -----AAGACGCGATTCCGTATATCAATTTTGCCAACCTGCTTTCATCCG 139
|||||.||.||||.|||||.||.|||||.|||.|.||||||..|.
BPUM_2390___y 90 CCCGAAAGACCCGGTTCCATATATTAACTTTGCGAACTTACTTTCAAGCA 139
BSNT_03991___ 140 TAAACGAGCTGGAACGTGCGCTTGCGTTTTATGATAAAGCGCTTGAATTA 189
|.||.||..|.|||||.|||.|....||.|.|.|.|||||..|||||.|.
BPUM_2390___y 140 TCAATGAATTTGAACGCGCGTTAAACTTCTTTCAAAAAGCCATTGAACTT 189
BSNT_03991___ 190 GA-----CAGTAGC-GCAGCCACTGCTTATTATGGAGCAGGAAATGTCT- 232
|| |.|.||| |||||| |||||.||||||||||||||.|
BPUM_2390___y 190 GATCACGCCGCAGCTGCAGCC------TATTACGGAGCAGGAAATGTATA 233
BSNT_03991___ 233 ---ATGTTGTAAAAGAA------ATGTACAAAGAAGCGAAAGAC-ATGTT 272
|| |||||||| ||| .||||.|||||| || ||
BPUM_2390___y 234 CACAT----TAAAAGAAGACTTTATG------AAAGCAAAAGACTAT-TT 272
BSNT_03991___ 273 TGAAAAAGCGCTTCGTGCGGGGATGGAAAACGGCGACCTATTTTACATGC 322
||||.||||.||....|||||.||||||||..|.||..|.|||||.||||
BPUM_2390___y 273 TGAACAAGCACTAAAAGCGGGCATGGAAAATAGTGATTTGTTTTATATGC 322
BSNT_03991___ 323 TCGG---AACGGTACTTGTCAAGCTCGAACAGCCTAAGCTTGCACTGCCA 369
|.|| .||| ||..|.||..|.||.|||||.||||||||..||||.
BPUM_2390___y 323 TGGGGCAGACG---CTCATTAAATTAGAGCAGCCGAAGCTTGCGATGCCT 369
BSNT_03991___ 370 TATTTACAAAGAGCGGTCGAACTGAATGAAAACGATACGGAAGCGCGTTT 419
|||.|.||..|.||..||||||||||||||.|.||||..|||||..|.||
BPUM_2390___y 370 TATCTTCAGCGTGCCATCGAACTGAATGAAGATGATAACGAAGCAAGATT 419
BSNT_03991___ 420 TCAATTCGGGATGTGCTTAGCCAACGAGGGCA--TGCTGGACGAAGCGCT 467
.|||||.||.||||||||||||||.|| .|| |||||||.||||||.|
BPUM_2390___y 420 CCAATTTGGCATGTGCTTAGCCAATGA--ACAATTGCTGGAAGAAGCGGT 467
BSNT_03991___ 468 --CAGCCAATTCGCAGCT-GTGACAGAGCAAGACCCGGGGCATGCAGATG 514
||.||..|.|..||.| ||.|| ||..||.|||..|||||||||||
BPUM_2390___y 468 GACAACCTTTACCGAGGTGGTCAC---GCGTGATCCGCAGCATGCAGATG 514
BSNT_03991___ 515 CATTTTATAATGCCGGTGTCGCTTATGCTTA--TAAAGAAAACCGAGAAA 562
|.|||||||||...||.||.||.|||||.|| ||.|||||| .|||..
BPUM_2390___y 515 CCTTTTATAATTTAGGAGTTGCGTATGCATATTTAGAGAAAA--AAGACG 562
BSNT_03991___ 563 AAGCGCTTGAAATGC-TGGACAAGGCAATTGATATCCAGCCAGATCATAT 611
||||||||||.|||| |||| ||.||.|||||..|.|||||..|||||||
BPUM_2390___y 563 AAGCGCTTGAGATGCTTGGA-AAAGCCATTGACGTGCAGCCTAATCATAT 611
BSNT_03991___ 612 GCTTGCGCTTCATGCTAAAAAACTGATT---GATCCATCATAA 651
|||.||.||.|||||..||||.|||||| ||..||..|||.
BPUM_2390___y 612 GCTGGCACTACATGCGCAAAAGCTGATTCAAGAGGCAGAATAG 654
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