Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03976 and BPUM_2379

See Amino acid alignment / Visit BSNT_03976 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:27
# Commandline: needle
#    -asequence dna-align/BSNT_03976___yrzL.1.24716.seq
#    -bsequence dna-align/BPUM_2379___yrzL.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03976___yrzL-BPUM_2379___yrzL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03976___yrzL-BPUM_2379___yrzL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03976___yrzL
# 2: BPUM_2379___yrzL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 280
# Identity:     224/280 (80.0%)
# Similarity:   224/280 (80.0%)
# Gaps:          14/280 ( 5.0%)
# Score: 932.0
# 
#
#=======================================

BSNT_03976___      1 ------------GTGAGCTCGTTTGATAAAACGATGAAATTTAATTTCTC     38
                                 |||||.||.||||||||.||.|||||.|||||.|||||
BPUM_2379___y      1 GTGCAAGAAGCAGTGAGTTCATTTGATAAGACAATGAAGTTTAACTTCTC     50

BSNT_03976___     39 CGATGATTCTGCTGAGACTAACGTAAATGAGGTGCTGATTACAGTGTATG     88
                     .||||||||.|||||.||.||.||.|||||.|||||.||||||||.||||
BPUM_2379___y     51 TGATGATTCAGCTGAAACCAATGTGAATGAAGTGCTCATTACAGTATATG    100

BSNT_03976___     89 ACGCGCTTCAGGAAAAGGGCTACAATCCAATCAACCAAATTGTCGGGTAC    138
                     ||||.||.||.|||||.||.|||||.||.|||||.|||||||||||.|||
BPUM_2379___y    101 ACGCACTCCAAGAAAAAGGATACAACCCGATCAATCAAATTGTCGGATAC    150

BSNT_03976___    139 TTGCTGTCAGGTGATCCCGCTTATATTCCTAGGCATCGTGACGCTCGCAA    188
                     |||||||||||.||.||.|||||||||||.||.||||..||.||||||||
BPUM_2379___y    151 TTGCTGTCAGGCGACCCTGCTTATATTCCAAGACATCAGGATGCTCGCAA    200

BSNT_03976___    189 TTTAATTCGCAAACTTGAAAGAGACGAATTAATCGAGGAATTGGTAAAGT    238
                     ..|||||||.|||||.|||.|||||||||||||.|||||||||||.||.|
BPUM_2379___y    201 CCTAATTCGTAAACTAGAACGAGACGAATTAATTGAGGAATTGGTTAAAT    250

BSNT_03976___    239 CTTATTTAGA-ACAGCATAAAGAGGCGTAA    267
                     |.||.||||| ||| |||||||||||||||
BPUM_2379___y    251 CGTACTTAGAGACA-CATAAAGAGGCGTAA    279


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